Cp4.1LG14g02480 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g02480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 2952669 .. 2952959 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATGTCCAAGCCTTCCTCCAAGTTATCTCGCTCGCTTTCCAAAATACTCCGGTCGCTTTTCCGATCAAAACCTAACTCAAATAGCTCCATTTTTCTGACTCGAGATCAACCCAAAGATGGGTTTTATGTCTTCTATGAAGTCGGGTCGCTCTCGACCATCCCTGAAGTCCCCGAGGCTGACTTTGGAGCCGGTCTTTCGCCGGAGATTAGCTCTTTGGTGAAGAAGACGGCTTCCGAGAGGTTCATGCCTAACTCCCTCCGCATCTCATGTTCTTTGAATATTTGA

mRNA sequence

ATGCCCATGTCCAAGCCTTCCTCCAAGTTATCTCGCTCGCTTTCCAAAATACTCCGGTCGCTTTTCCGATCAAAACCTAACTCAAATAGCTCCATTTTTCTGACTCGAGATCAACCCAAAGATGGGTTTTATGTCTTCTATGAAGTCGGGTCGCTCTCGACCATCCCTGAAGTCCCCGAGGCTGACTTTGGAGCCGGTCTTTCGCCGGAGATTAGCTCTTTGGTGAAGAAGACGGCTTCCGAGAGGTTCATGCCTAACTCCCTCCGCATCTCATGTTCTTTGAATATTTGA

Coding sequence (CDS)

ATGCCCATGTCCAAGCCTTCCTCCAAGTTATCTCGCTCGCTTTCCAAAATACTCCGGTCGCTTTTCCGATCAAAACCTAACTCAAATAGCTCCATTTTTCTGACTCGAGATCAACCCAAAGATGGGTTTTATGTCTTCTATGAAGTCGGGTCGCTCTCGACCATCCCTGAAGTCCCCGAGGCTGACTTTGGAGCCGGTCTTTCGCCGGAGATTAGCTCTTTGGTGAAGAAGACGGCTTCCGAGAGGTTCATGCCTAACTCCCTCCGCATCTCATGTTCTTTGAATATTTGA

Protein sequence

MPMSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPEADFGAGLSPEISSLVKKTASERFMPNSLRISCSLNI
Homology
[Close]
BLAST of Cp4.1LG14g02480 vs. TrEMBL
Match: A0A0A0KV10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051450 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.2e-33
Identity = 77/93 (82.80%), Postives = 81/93 (87.10%), Query Frame = 1 

Query: 2   PMSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPEA 61
           PMSK SSK SRS SKILRSLFR KPNSN+ IF  +DQP+DGFYVFYEVGSLSTIPEVPEA
Sbjct: 81  PMSKASSKFSRSFSKILRSLFRPKPNSNTPIFRAQDQPRDGFYVFYEVGSLSTIPEVPEA 140

Query: 62  DFGAGLSPEISSLVKKTASERFMPNSLRISCSL 95
           D GAGLSPEISSLVKKTAS RF PNS+ ISC L
Sbjct: 141 DLGAGLSPEISSLVKKTASGRFTPNSIGISCVL 173

[Close]
BLAST of Cp4.1LG14g02480 vs. TrEMBL
Match: B9GL78_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10440g PE=4 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-14
Identity = 50/91 (54.95%), Postives = 69/91 (75.82%), Query Frame = 1 

Query: 2   PMSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYE-VGSLSTIPEVPE 61
           P  K  SK+SRSL+K L+S+F+SK NS S++F  +++ +D +YV Y+  G+L+TIPEVPE
Sbjct: 85  PPPKKPSKISRSLNKFLKSMFKSKQNS-STMFRVQERLQDEYYVIYDKSGALTTIPEVPE 144

Query: 62  ADFGAGLSPEISSLVKKTASERFMPNSLRIS 92
            DFG G SPEI+SLV+KT S+RF   S+ IS
Sbjct: 145 IDFG-GFSPEINSLVRKTVSDRFTAASIGIS 173

[Close]
BLAST of Cp4.1LG14g02480 vs. TrEMBL
Match: B9RCQ2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691280 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-14
Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = 1 

Query: 2   PMSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYE-VGSLSTIPEVPE 61
           P++K  SK+SRSL+K+L+S+F+S+ NS + +F  RD+P D +   Y+  G+LSTIPEVPE
Sbjct: 91  PVTKKPSKISRSLNKLLKSVFKSRQNS-TGLFRFRDRPGDEYCAVYDKSGALSTIPEVPE 150

Query: 62  ADFGAGLSPEISSLVKKTASERFMPNS-LRISCS 94
            DFG G SPEI+SLV+++ SERF   S + ISC+
Sbjct: 151 IDFG-GFSPEINSLVRRSGSERFTATSVMGISCA 182

[Close]
BLAST of Cp4.1LG14g02480 vs. TrEMBL
Match: K4CPK5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-14
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 2   PMSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYEV-GSLSTIPEVPE 61
           P+SK +S++SRS  K+L+S+FR+K  SNS +F  + Q +DGFYV Y+  G+L+TIPE PE
Sbjct: 77  PISKKTSRISRSFQKLLKSVFRAK-QSNSPLF--QGQNRDGFYVVYDKSGALTTIPEGPE 136

Query: 62  ADFGAGLSPEISSLVKKTASERFMPNSLRISCS 94
            D   GLSPEI SLV++T SERF   S+ ISC+
Sbjct: 137 YD---GLSPEIKSLVRRTGSERFTATSIGISCA 163

[Close]
BLAST of Cp4.1LG14g02480 vs. TrEMBL
Match: M1AWR0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012296 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.6e-14
Identity = 50/93 (53.76%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 2   PMSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYEV-GSLSTIPEVPE 61
           P+SK ++++SRS  K+L+S+FR+K  SNS +F  + Q +DGFYV Y+  G+L+TIPE PE
Sbjct: 77  PISKKTNRISRSFQKLLKSIFRAK-QSNSPLF--QGQNRDGFYVVYDKSGALTTIPEGPE 136

Query: 62  ADFGAGLSPEISSLVKKTASERFMPNSLRISCS 94
            D   GLSPEI SLV++T SERF   S+ ISC+
Sbjct: 137 YD---GLSPEIKSLVRRTGSERFTATSIGISCA 163

[Close]
BLAST of Cp4.1LG14g02480 vs. TAIR10
Match: AT5G41810.1 (AT5G41810.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1 

Query: 5   KPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQP-----------KDGFYVFYEV-GSL 64
           K S+K+SRSL + L+S+F  KP  + S+  T   P           KD +YV Y+  GSL
Sbjct: 194 KHSNKISRSLQRFLKSMF--KPKQHQSL-TTPSSPVYKAVGHGGGDKDRYYVVYDKSGSL 253

Query: 65  STIPEVPEADFGAGLSPEISSLVKKTASERFMPNS-LRISCS 94
           +TIPE  E +    +SPEI+SLV+KT SERF  +  + ISC+
Sbjct: 254 TTIPESTEKE----VSPEINSLVRKTVSERFPASRVVGISCA 288

[Close]
BLAST of Cp4.1LG14g02480 vs. TAIR10
Match: AT1G64340.1 (AT1G64340.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.4e-07
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1 

Query: 6   PSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKD---GFYVFYEVGSLSTIPEVPEAD 65
           P+ K+SRSL K+++S+F+ K   ++++F T     D    + VF + GSL+TIPE  E+ 
Sbjct: 178 PTKKISRSLGKLIKSMFKQK--QSNALFKTGHSGVDMDKYYVVFDKTGSLTTIPESGEST 237

Query: 66  FGAGLSPEISSLVKKTASERFMPNSLRIS 92
              G   EI+SLV+KT SER   + L +S
Sbjct: 238 EMVG--SEINSLVRKTTSERIPQSRLVVS 262

[Close]
BLAST of Cp4.1LG14g02480 vs. NCBI nr
Match: gi|659102113|ref|XP_008451959.1| (PREDICTED: uncharacterized protein LOC103493107 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 9.1e-33
Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 1 

Query: 4   SKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPEADF 63
           SK SSK SRS SKILRSLFR KPNSN+ IF  +DQP+DGFYVFYEVGSLSTIPEVPEADF
Sbjct: 77  SKASSKFSRSFSKILRSLFRPKPNSNTPIFRAQDQPRDGFYVFYEVGSLSTIPEVPEADF 136

Query: 64  GAGLSPEISSLVKKTASERFMPNSLRISCSL 95
           GAGLSPEISSLVKKTASERF PNS+ ISC L
Sbjct: 137 GAGLSPEISSLVKKTASERFTPNSIGISCVL 167

[Close]
BLAST of Cp4.1LG14g02480 vs. NCBI nr
Match: gi|778697524|ref|XP_011654341.1| (PREDICTED: uncharacterized protein LOC105435347 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 77/93 (82.80%), Postives = 81/93 (87.10%), Query Frame = 1 

Query: 2   PMSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYEVGSLSTIPEVPEA 61
           PMSK SSK SRS SKILRSLFR KPNSN+ IF  +DQP+DGFYVFYEVGSLSTIPEVPEA
Sbjct: 81  PMSKASSKFSRSFSKILRSLFRPKPNSNTPIFRAQDQPRDGFYVFYEVGSLSTIPEVPEA 140

Query: 62  DFGAGLSPEISSLVKKTASERFMPNSLRISCSL 95
           D GAGLSPEISSLVKKTAS RF PNS+ ISC L
Sbjct: 141 DLGAGLSPEISSLVKKTASGRFTPNSIGISCVL 173

[Close]
BLAST of Cp4.1LG14g02480 vs. NCBI nr
Match: gi|1009156719|ref|XP_015896390.1| (PREDICTED: probable inactive serine/threonine-protein kinase slob1 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 1 

Query: 3   MSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYEV-GSLSTIPEVPEA 62
           ++K SSKLSRSL+K+LRS+F+SK    + +F  ++Q +DGF+V Y+  G+L+TIPEVPE 
Sbjct: 102 VNKKSSKLSRSLNKLLRSVFKSK----NPVFRVKEQSEDGFFVVYDKSGALTTIPEVPEI 161

Query: 63  DFGAGLSPEISSLVKKTASERFMPNSLRISCS 94
           DFG GLSPEI SLV++T SERF   S+ ISC+
Sbjct: 162 DFG-GLSPEIGSLVRRTGSERFTAASIGISCA 188

[Close]
BLAST of Cp4.1LG14g02480 vs. NCBI nr
Match: gi|566148234|ref|XP_002299484.2| (hypothetical protein POPTR_0001s10440g [Populus trichocarpa])

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-14
Identity = 50/91 (54.95%), Postives = 69/91 (75.82%), Query Frame = 1 

Query: 2   PMSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYE-VGSLSTIPEVPE 61
           P  K  SK+SRSL+K L+S+F+SK NS S++F  +++ +D +YV Y+  G+L+TIPEVPE
Sbjct: 85  PPPKKPSKISRSLNKFLKSMFKSKQNS-STMFRVQERLQDEYYVIYDKSGALTTIPEVPE 144

Query: 62  ADFGAGLSPEISSLVKKTASERFMPNSLRIS 92
            DFG G SPEI+SLV+KT S+RF   S+ IS
Sbjct: 145 IDFG-GFSPEINSLVRKTVSDRFTAASIGIS 173

[Close]
BLAST of Cp4.1LG14g02480 vs. NCBI nr
Match: gi|460400017|ref|XP_004245532.1| (PREDICTED: uncharacterized protein LOC101261732 [Solanum lycopersicum])

HSP 1 Score: 85.1 bits (209), Expect = 7.2e-14
Identity = 51/93 (54.84%), Postives = 69/93 (74.19%), Query Frame = 1 

Query: 2   PMSKPSSKLSRSLSKILRSLFRSKPNSNSSIFLTRDQPKDGFYVFYEV-GSLSTIPEVPE 61
           P+SK +S++SRS  K+L+S+FR+K  SNS +F  + Q +DGFYV Y+  G+L+TIPE PE
Sbjct: 77  PISKKTSRISRSFQKLLKSVFRAK-QSNSPLF--QGQNRDGFYVVYDKSGALTTIPEGPE 136

Query: 62  ADFGAGLSPEISSLVKKTASERFMPNSLRISCS 94
            D   GLSPEI SLV++T SERF   S+ ISC+
Sbjct: 137 YD---GLSPEIKSLVRRTGSERFTATSIGISCA 163

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g02480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g02480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV10_CUCSA8.2e-3382.80Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051450 PE=4 SV=1[more]
B9GL78_POPTR2.3e-1454.95Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10440g PE=4 SV=2[more]
B9RCQ2_RICCO5.0e-1453.19Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691280 PE=4 SV=1[more]
K4CPK5_SOLLC5.0e-1454.84Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M1AWR0_SOLTU8.6e-1453.76Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012296 PE=4 SV=1[more]
BLAST of Cp4.1LG14g02480 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41810.11.3e-0843.14 unknown protein[more]
AT1G64340.12.4e-0740.45 unknown protein[more]
BLAST of Cp4.1LG14g02480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102113|ref|XP_008451959.1|9.1e-3384.62PREDICTED: uncharacterized protein LOC103493107 [Cucumis melo][more]
gi|778697524|ref|XP_011654341.1|1.2e-3282.80PREDICTED: uncharacterized protein LOC105435347 [Cucumis sativus][more]
gi|1009156719|ref|XP_015896390.1|1.6e-1657.61PREDICTED: probable inactive serine/threonine-protein kinase slob1 isoform X1 [Z... [more]
gi|566148234|ref|XP_002299484.2|3.2e-1454.95hypothetical protein POPTR_0001s10440g [Populus trichocarpa][more]
gi|460400017|ref|XP_004245532.1|7.2e-1454.84PREDICTED: uncharacterized protein LOC101261732 [Solanum lycopersicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g02480.1Cp4.1LG14g02480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33978FAMILY NOT NAMEDcoord: 7..92
score: 6.6
NoneNo IPR availablePANTHERPTHR33978:SF4SUBFAMILY NOT NAMEDcoord: 7..92
score: 6.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g02480Cucsa.107290Cucumber (Gy14) v1cgycpeB0237
Cp4.1LG14g02480CmaCh04G007010Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g02480CmoCh04G007440Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g02480CmoCh16G006060Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g02480Cla010920Watermelon (97103) v1cpewmB221
Cp4.1LG14g02480Csa4G051450Cucumber (Chinese Long) v2cpecuB221
Cp4.1LG14g02480MELO3C016304Melon (DHL92) v3.5.1cpemeB196
Cp4.1LG14g02480ClCG07G014930Watermelon (Charleston Gray)cpewcgB212
Cp4.1LG14g02480CSPI04G06260Wild cucumber (PI 183967)cpecpiB223
Cp4.1LG14g02480Lsi07G007080Bottle gourd (USVL1VR-Ls)cpelsiB184
Cp4.1LG14g02480MELO3C016304.2Melon (DHL92) v3.6.1cpemedB238
Cp4.1LG14g02480CsaV3_5G002120Cucumber (Chinese Long) v3cpecucB0277
Cp4.1LG14g02480CsaV3_4G006460Cucumber (Chinese Long) v3cpecucB0266
Cp4.1LG14g02480Bhi01G002285Wax gourdcpewgoB0294
Cp4.1LG14g02480CsGy4G006180Cucumber (Gy14) v2cgybcpeB487
Cp4.1LG14g02480Carg22241Silver-seed gourdcarcpeB0838
Cp4.1LG14g02480Carg21271Silver-seed gourdcarcpeB0503
Cp4.1LG14g02480Carg13059Silver-seed gourdcarcpeB0058
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g02480Cp4.1LG01g00270Cucurbita pepo (Zucchini)cpecpeB233
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g02480Cucumber (Gy14) v2cgybcpeB324
Cp4.1LG14g02480Cucumber (Gy14) v2cgybcpeB619
Cp4.1LG14g02480Melon (DHL92) v3.6.1cpemedB217
Cp4.1LG14g02480Melon (DHL92) v3.6.1cpemedB230
Cp4.1LG14g02480Cucumber (Chinese Long) v3cpecucB0254
Cp4.1LG14g02480Cucurbita pepo (Zucchini)cpecpeB196
Cp4.1LG14g02480Cucurbita maxima (Rimu)cmacpeB344