Carg27418 (gene) Silver-seed gourd

Overview
NameCarg27418
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description3-beta hydroxysteroid dehydrogenase
LocationCucurbita_argyrosperma_scaffold_413 : 125061 .. 132227 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCCATGCCTTCACAAGAACATCCCTTCAAATCCATTACCCTTTTAATCCCACCACCAAACAGCAAGAACACAGGGTTTCCAAATGGGTATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATCGCCTTCATTCTCTGTTCTTCCTTCTTCACTTTCCGACTTCCATGGCGCCAGACTCCACGCCCAAGTTCAGGTCCCTTTCTCCTACTCTTTCCTTGTTCATTTTTCTAATCTGGGTATCATGTTTTACTGTTGAATTTTGATTCAAACTGGAAATCCTTGATGGGTTTTGTTGTTATGGCATCAAAATCACTGGATATTGATTTGGTTGTCCCTATAAATGGATATTGATTCGGATTTCGGAGGGAAAAGACTCGTTTCTCATTCGAGATAGGGGTAGGGGGAGTTATTGTGAAGCCATCAAAGGCAGGCAAATAGCTTCTACCGAGTTTCCCAACCCTTAGATTAGTAGCTCAACTCTTTCGATTGGCGTGACACTGCTAGATGCTTCTGATCAATATTAGAGCTAGACACTAGGCGATGTGCTAGTGAGGAGACGGTTCTCCGAATGGGGTAGCATGAGACAGTGTGCCCGGCCTGGAAGGGGGTGGATTTGGTGGGGGTCTCACATCGATTGGAGAAAGGAACGAGTGCCAGCGAGGACGCTGGGCCCTGAAGGAGGTGGTTGTAAGATCCCACATCGGTTGGGGAGGAAAATGAAACACACTTTGTAAGGGTGTGGAAACCTCTACCTAGCAAACGCGTTTTAAAAACCTTGAGGGGAATCTTGAAAGGAAAAGCCCATAGAGGACAATATCTACTAGGCGGAAACGACAAATAGCTTTTACCGAGGTCCCCAAACCCTTAGATTAGTAGCTCAACTCTTTCGATTGGCGTGACACTACTAGATGCTTCTGATCAGTATCAGAGCCAGACACTGGGCGATGTGCCAGTGAGGAGACTGTTCTCCGAAGGGGGTTGCACGAGGTGGTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGTGGATTTGGTGGGGGTCCCACATCGGTTGGAGAAAGGAACGAGTGGACCCTGAAGGAGGGTGGATTGTAAGATCCCACATCGGTTGGGGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAACCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAGAGAGGACAATATCTACTAGTGGTGAGCTTGAACCGTTAGAGTCAGGAATAGGAGAATCGAATCTAGTTTGAGTTTTTTATTATGTACCTGTGCCTTTTGTTGGATATGAAGCCCGTAGTGAAAGACGGTAATTCGAGTGTGCATTGTTGTGCGATCTTAACATCTTTTTGCTCTGAAACCGAGTTAAACTAGCTTAAGTCGTTGATTTATATGTATTCTCAATTGGGTTTGGTCTGGATTGCAGTATAAGAGGAAGGTTATGCAGCCAAAAGGGGCATTACATGTTACAGCAAGCGCCAAGAAGAACATCCTTGTAATGGGTGGCACCAGATTCATTGGTATATTCTTGTCTAGACTTCTTGTCAAAGAGGGCCATCAGGTTAAGCCATTCTCCTTCTTCTTGCTTTGCTTGCTAGCTACAGATTCTCATTAGAAAGATTCATAGAGCTTGTTAATTGTGGCAGGTGACTTTGTTTACAAGAGGAAAAGCGCCCGTTACGCAACAATTGCCCGGCGAGTCGGATGCAGATTATGCTGATTTTAAATCCAAGGTCTTCTAAGCTTACATTTATGTGATATCCCACGTTGGTTGGGGAGGAGAACGAAACACCCTTTGTAAGGGTGTAGAAACCTCTCTATAGTAGACGCGTTTTAAAAACTTTGAGGGGAGTAATGTGCCGACGAGGAGGCTGTTCCCCAAAGGGGTAGACATGAGGCGGTGTGCTAGTAAAGATGTTGGGCCCCGAAGGGGTGGATTTGGTGGGGTCCTATATCGATTGGAAAAAGGAACGAGTGTCAGTAAGGACGCTGGGCCCTGAAGGAGGTGGATTGTGATATCCTACATTGGTTGGTGAGGAGAACGAAATACCCTTTATACGGGTGTGGAAACCTCTCCCTAGACGCGTTTTAAAAATCTTGAGGGGAAGCCCGAAAGGGAAAACTCAAGAGGACAATATCTGCTAGCGGTGGGCCTGGGCCATTACAAATGGTATCAGAGCCAGACACCGGGCAATGTGTCAGCGAGGATGCTCTTCCTCGAAACGAGGCAGTGTGCCAGTAACAACATTGGGCCCCGAAGGGGGTTGGATTTAGTGGGGGTAACCACATCGATTGGAAAAGGAACAAGTGCCAGCAAGGAGGACAACGAAACACCCTTTGTAAGGGTGTGGAAACTTCTCCCTAGACGCGTTTTAAAAGCCTTGAGGGGAAGCCCGAGAGGGAAAGTCCAAAGAGGACAATATCTGCTAGCAGTGGCCCTGAGTCGTTACAATTTAAGCCTTATAATTCGGTAGCTCAAGAAATGTGGCTTAACGATTTTATTTGATTCATATGTTCCAGGTTCTACATTTGAAGGGAGACAGAAAAGACTTCGATTTCGTGAAATCGAGCCTCTCGGCTGCAGGGTTCGATGTCGTTTACGACATAAATGGTGTGCATGATTTTGGATTGATCTCTTTTGGTTTGAAGTTCTTCACCCTGATACTCACTGCTGCTTGATTTCAGGGCGAGAAGCAGTTGAAGTTGAACCAATTTTAGATGCATTGCCTAAGCTAGAGCAGTAAGATTCCCTAAATGATATCCACTTTCTTTTATATGTTAGTTGCTGATATTATTACTTTTATATGCTTCTGAGGTCGTATGTTCGAGTGATCGTTTGGTTGAAATATTAAATGTTCTTTTAAGTTTCCCGAACTCATTGTTATATTGTTCGGTAGCTGTCCCATAACATTAGTACAGTACATAAATGTGAGGTCCCGTATCGGTTGGAGAGGAGAACGAAGCATTCCTTATAAGGGTGTGGAAATCTCTCCCTAGGAGACGTGTTTTAAAACCGTGAGGCTGACAGTGATACGTAACGGGCCGAAACGGACAATTACTGCTAGCTATGGGCTTAAACTGTTACAAATGGTATCAGAACCAGACACTGGGCAGTGTGCCAGCGAGGACGCTGGACCGTCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGAAACGATGCATTCCTTATAAGGGTGTGAAAACCTCTTCCAAGCAGACGTGTTTTTAAATTGTGAGGCTGACAACGATACGTAATGGGTCGAAGCGGACAGTATCTACTTGTAGTGGGCTTGGGTTGTTACAAATGGTATTAGAACCATACACCAGGCAGTGTGCCAGCGAGGACGCTAGGCCCCCAAAGAGGGTGGATTGTGAGATCCCACATTGGTTGGAGCGGAGAACGAAACATTCCTTATAAGAGTGTGGAAACCTCTATCTAGAAGACTCGTTTTAAAACCGTGAGGCTGACGGTGCTACATAACAGGTCGAAGCAGACAATATCTGCTAGCGGTGGGCTTTGAATGTTATAAATGGTGCGTGCTAGCAAGGAAGCGGGTCCCCAAGGGGGGTGGATTGTGAGATCCCACCTCAGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAATCTCTTCCTAGCAGACGCGTTTTAAAACTGTGAGACTGACAGTGATACATAACGGGCCAAAGGTGACAATATCTGCTAGTGGTGGCCTTGGGCTATTACAAATGATATCAGAGCAGACACTGAGCAGTGTGCCAGTGAGGACGTTGGGCCCCCAAAGTGGGTGAATTGTGAGATCCCACATCGGTTGGAGAGGGAAACAAAGCATTCCTTGTAAGGGTGTGGAAACCTCTCCCTAGCAGATGCATTTTAAAACCGTGAATCTGACGGTGATACGTAACGGTCAAAGCGGACAATATCTGCTAGTGGTAGGCTTGGGCTGTTACAATTGTATCAGAGCTAAACACCGGGCAGTGTGCCAACGAGGACGCTAACCCTTTAAGGGGTAGATTGTGAGATCTCACATTGATTGGAGAGTGGAACAAAACATTCCTTATAAGAGTGTGAAAACCTCTCCTTAGCAGACTCTTTTTAAAACCATGAGGCTAACGATGATACGTAACAAGTTGAAGCGAACAATATCTGCTAGTGGTGGGCTTAGGCTATTACAAATAGTATTAGAGCCAGACACCGAGCAGTGTGCTAGCGAGGATGCTGAGCCCCCAAGTGAGATAGATTGTGAGATCCAACACGGTTGGAGAGGGGAACAAAGCATTCTTTGTAAGGGTGTGGAAACCTCTCCCTAGAAGACGTGTTTTAAAACCGTGAGGCTGACGGTGATACATAATGGGCCAAAGCGAACAATATCTGTTAGCGGTGAGCTTGAGCTATTACAAATGGTATCAGGGCCAAATACCGGGCAGTGTGCCAGCAAGGACGCTCGGCCTCCAAAGGAGGTGGATTGTGAGATCCCACATTGGTTAGAAAGGAGAACAAAGCATTCCTTATCAGGGTGTGAAAACCTCTCCCTAGCAAACGTGTTTTAAAACCGTGAGGCTGACGGTGATACGTAACGGGCCGAAGTAGACGATATCTCGACTGTTATAATAAGCTAGGCCAAACATTAGGGTTCATAACAAAACTTAGCATGGAATGTGATGTATCTAATTATTCTCAGGTTTATATACTGTTCTTCAGCTGGTGTTTACCTCAAATCTGATCTCCTACCTCACTTTGAGGTACCTTTCAGCTTACTTTCTTTGTCAAATACCAAATAAATGGTTCACTCAAAGCTTGACCTCGACTTTGCTTTCATATCATAGGTAGACGCAGTCGATCCAAAGAGTCGACACAAGGGAAAGCTCGAGACCGAGAGCTTACTGGCATCGAAGGACGTTAACTGGACATCTATAAGACCAGTCTACATCTATGGACCATTGAACTACAACCCTGTGGAGGAATGGTTCTTCCACCGGTTGAAAGCCGGTCGCCCCATTCCGATACCCAACTCAGGCATTCAAATTACCCAACTCGGTCACGTCAAGGTCTGTGCTACTATGTACTATTTATGCAACAGGAACAAATCGTTAAGTTCGTTGTAACTGTGAGATCCCACATCAGTGGGAGAGAGGAACGGAACATTCATTATTAGGGTGTGAAAATCTGTGGAGAACGAAACACCCTTTATAAGGGTGTGAAAACCTTTCCCTAGAAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGTAAGGGAAAGCCCAAAGAGGACAATATATGCTAGCGGTGGGCTTGGGCTGTTACAGAACTTTTCCATAGTAGACACGTTGTAACGGCCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCTCTTTCGGGCTTCCCCTCAAGGCTTTAAAACCTAGCGGTGGGCTTGGGCTTGGGCTTGGGCTTGGGCTTGGGCTTGGGCTTGGGCTGTTACAAAACTTCTCCATAGTAGACACGTTGTAACGGCCCATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTGAAACCTAGTGGTGGGCTTGGGCTTGGGCTTGGGCTTGGGTTGGGCTTGGGCTTGGGCTGTTACAAAACTTCTCCATAGTAGACACGTTGTAACGGCCCATATTGTCCTCTTTGGGCTTTCCTTTTCGGGCTTCCCCTCAAGGCTTTGAGAACCTAGTGGTGGGCTTGTGGTTTTGGGCTTGGGTTACGGGCTTGGGCTTGAGGCTTGGCTGGGCTTGGGCTGTTACAAAACTTCTCCATAGTAGACACGTTGTAACGGCCCATATTGTCCTATTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACCTAGCGGTGGGCTTGGGCTTGGGCTGTTACAAAACTTCTCTATAGTAGATACGTTGTAATGGCCCAGATCCACCACTAGCAGATATTATTCTCTTTGGGCTTTCCCTCTCAGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGGAAGGTTTCCACACCCTTACAAAGGGTGTTTCGTTCTCTTCCCCAACCAATGTGGGACTCTCACAATCCACCCCCCTTCGAGGCCTAGCATCCTCGTTGGCACTCTTTCCTTTCTCCAATCGATGTGGGACCCTGCCAAATTCACCCCCTTTGGGCCCAGCGTCCTTATTGGCACACTGTCTCGTGTCTACCCCCTTTGGGGAACAACCTCCTCACTGGCACATAGTCCGGTGTCTAGCTCTGATACCATTTGTAACAACCCAGATCCACCGCTAACAGATATTGCCCTATTTGGGTTTTTCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTACTAGGGGGAAGGTGTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGTGAGATATCACACGTTTTAAAAACCTTGCCCAAAGAGGACAATATCTGCTAACGGTAGACTTAGGCTGTTAAAATAACGGTCCTAGAAAGCATTCACGGCCATAGTGTGAATTGTTTAGGAATCGAAATCGAGTAAATGATTGAACGTTTTTTTTACGACCGCAGGATTTGGCAACAGCTTTTGTTCAAGTTCTTGGTAATGAAAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTGACATTTGATGGGTTAGCCAAAGCTTGTGCAAAGGTACTTTCATGGAGTCATAATCATGACAACATGGTATTCATTGTAGAGCTAACATCTAAACTATCTCACTTCGCAGGCTGGAGGCTTTCCCGAGCCCGAGATCGTCCACTATAACCCGAAGGAGTTCGACTTCGGAAAAAAGAAGCCATTCCCTTTCCGTGATCAGGTAATCTCATCAACGTAATGATAAGTTCGGTGATTCTAATTGCTCGAAATAGCACTGTTCGTATTGATATATAATGTAATGCAGCATTTCTTTGCGTCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAGTTCGATTTGGTTGAAGGACTTACCGACTCCTACAACTTGGACTTTGGCCGAGGTACTTTCAGGAAAGAGGCCGATTTCTCAACGGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGA

mRNA sequence

AAGCCATGCCTTCACAAGAACATCCCTTCAAATCCATTACCCTTTTAATCCCACCACCAAACAGCAAGAACACAGGGTTTCCAAATGGGTATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATCGCCTTCATTCTCTGTTCTTCCTTCTTCACTTTCCGACTTCCATGGCGCCAGACTCCACGCCCAAGTTCAGTATAAGAGGAAGGTTATGCAGCCAAAAGGGGCATTACATGTTACAGCAAGCGCCAAGAAGAACATCCTTGTAATGGGTGGCACCAGATTCATTGGTATATTCTTGTCTAGACTTCTTGTCAAAGAGGGCCATCAGGGAGACAGAAAAGACTTCGATTTCGTGAAATCGAGCCTCTCGGCTGCAGGGTTCGATGTCGTTTACGACATAAATGGGCGAGAAGCAGTTGAAGTTGAACCAATTTTAGATGCATTGCCTAAGCTAGAGCAGTTTATATACTGTTCTTCAGCTGGTGTTTACCTCAAATCTGATCTCCTACCTCACTTTGAGGATTTGGCAACAGCTTTTGTTCAAGTTCTTGGTAATGAAAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTGACATTTGATGGGTTAGCCAAAGCTTGTGCAAAGGCTGGAGGCTTTCCCGAGCCCGAGATCGTCCACTATAACCCGAAGGAGTTCGACTTCGGAAAAAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCGTCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAGTTCGATTTGGTTGAAGGACTTACCGACTCCTACAACTTGGACTTTGGCCGAGGTACTTTCAGGAAAGAGGCCGATTTCTCAACGGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGA

Coding sequence (CDS)

ATGGGTATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATCGCCTTCATTCTCTGTTCTTCCTTCTTCACTTTCCGACTTCCATGGCGCCAGACTCCACGCCCAAGTTCAGTATAAGAGGAAGGTTATGCAGCCAAAAGGGGCATTACATGTTACAGCAAGCGCCAAGAAGAACATCCTTGTAATGGGTGGCACCAGATTCATTGGTATATTCTTGTCTAGACTTCTTGTCAAAGAGGGCCATCAGGGAGACAGAAAAGACTTCGATTTCGTGAAATCGAGCCTCTCGGCTGCAGGGTTCGATGTCGTTTACGACATAAATGGGCGAGAAGCAGTTGAAGTTGAACCAATTTTAGATGCATTGCCTAAGCTAGAGCAGTTTATATACTGTTCTTCAGCTGGTGTTTACCTCAAATCTGATCTCCTACCTCACTTTGAGGATTTGGCAACAGCTTTTGTTCAAGTTCTTGGTAATGAAAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTGACATTTGATGGGTTAGCCAAAGCTTGTGCAAAGGCTGGAGGCTTTCCCGAGCCCGAGATCGTCCACTATAACCCGAAGGAGTTCGACTTCGGAAAAAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCGTCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAGTTCGATTTGGTTGAAGGACTTACCGACTCCTACAACTTGGACTTTGGCCGAGGTACTTTCAGGAAAGAGGCCGATTTCTCAACGGATGACATAATCCTTGGCAAGAGCCTGGTTCTTCAAGCTTGA

Protein sequence

MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFLSRLLVKEGHQGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA
Homology
[Close]
BLAST of Carg27418 vs. NCBI nr
Match: XP_022961476.1 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita moschata])

HSP 1 Score: 506.9 bits (1304), Expect = 4.3e-140
Identity = 275/383 (71.80%), Postives = 275/383 (71.80%), Query Frame = 0 

Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60
           MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQ----------------------------------GDR 120
           LVMGGTRFIGIFLSRLLVKEGHQ                                  GDR
Sbjct: 61  LVMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESDADYADFKSKVLHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 E----------------------------------------------------------- 240
           E                                                           
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 ---------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 276
                          DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

[Close]
BLAST of Carg27418 vs. NCBI nr
Match: XP_023515393.1 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 505.0 bits (1299), Expect = 1.6e-139
Identity = 274/383 (71.54%), Postives = 274/383 (71.54%), Query Frame = 0 

Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60
           MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASA KNI
Sbjct: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQ----------------------------------GDR 120
           LVMGGTRFIGIFLSRLLVKEGHQ                                  GDR
Sbjct: 61  LVMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESDADYADFKSKVLHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 E----------------------------------------------------------- 240
           E                                                           
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 ---------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 276
                          DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

[Close]
BLAST of Carg27418 vs. NCBI nr
Match: XP_022968745.1 (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita maxima])

HSP 1 Score: 498.8 bits (1283), Expect = 1.2e-137
Identity = 272/383 (71.02%), Postives = 272/383 (71.02%), Query Frame = 0 

Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60
           MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTA AKKNI
Sbjct: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTAIAKKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQ----------------------------------GDR 120
           LVMGGTRFIGIFLSRLLVKEGHQ                                  GDR
Sbjct: 61  LVMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESDADYADFKSKVLHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 E----------------------------------------------------------- 240
           E                                                           
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 ---------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 276
                          DLATAFVQVLGN KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNGKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

[Close]
BLAST of Carg27418 vs. NCBI nr
Match: XP_008442117.1 (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis melo])

HSP 1 Score: 493.8 bits (1270), Expect = 3.8e-136
Identity = 268/383 (69.97%), Postives = 271/383 (70.76%), Query Frame = 0 

Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQ----------------------------------GDR 120
           L+MGGTRFIGIFLSRLLVKEGHQ                                  GDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 E----------------------------------------------------------- 240
           E                                                           
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 ---------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 276
                          DLATAFVQVLGN+KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

[Close]
BLAST of Carg27418 vs. NCBI nr
Match: XP_004146391.1 (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis sativus] >KGN54798.1 hypothetical protein Csa_4G500330 [Cucumis sativus])

HSP 1 Score: 486.5 bits (1251), Expect = 6.0e-134
Identity = 263/383 (68.67%), Postives = 269/383 (70.23%), Query Frame = 0 

Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQ----------------------------------GDR 120
           L+MGGTRFIGIFLSRLLVKEGHQ                                  GDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 E----------------------------------------------------------- 240
           E                                                           
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 ---------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 276
                          DLA AFVQVLGN+KASQQVFNISGEKYV+FDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300

[Close]
BLAST of Carg27418 vs. TAIR10
Match: AT1G09340.1 (chloroplast RNA binding)

HSP 1 Score: 424.1 bits (1089), Expect = 6.6e-119
Identity = 228/370 (61.62%), Postives = 248/370 (67.03%), Query Frame = 0 

Query: 13  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIF 72
           Q  PSFS+L SSLSDF+GA+LH QVQYKRKV QPKGAL+V+AS++K IL+MGGTRFIG+F
Sbjct: 9   QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLF 68

Query: 73  LSRLLVKEGHQ----------------------------------GDRKDFDFVKSSLSA 132
           LSR+LVKEGHQ                                  GDRKD+DFVKSSLSA
Sbjct: 69  LSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSA 128

Query: 133 AGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE----------- 192
            GFDVVYDINGREA EVEPIL+ALPKLEQ+IYCSSAGVYLKSD+LPH E           
Sbjct: 129 EGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHK 188

Query: 193 ------------------------------------------------------------ 252
                                                                       
Sbjct: 189 GKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLG 248

Query: 253 ---DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 275
              DLATAF+ VLGNEKAS+++FNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
Sbjct: 249 HVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 308

[Close]
BLAST of Carg27418 vs. TAIR10
Match: AT3G63140.1 (chloroplast stem-loop binding protein of 41 kDa)

HSP 1 Score: 95.1 bits (235), Expect = 7.0e-20
Identity = 69/241 (28.63%), Postives = 97/241 (40.25%), Query Frame = 0 

Query: 101 FDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFE----------- 160
           FDVV D NG++   V P++D      ++QF++ SSAG+Y  ++  PH E           
Sbjct: 158 FDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHV 217

Query: 161 ------------------------------------------------------------ 220
                                                                       
Sbjct: 218 VVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVR 277

Query: 221 DLATAFVQVLGN-EKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFG 268
           DL++     + N E AS  +FN   ++ VT DG+AK CA A G    EIVHY+PK     
Sbjct: 278 DLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVD 337

[Close]
BLAST of Carg27418 vs. Swiss-Prot
Match: sp|Q9SA52|CP41B_ARATH (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.2e-117
Identity = 228/370 (61.62%), Postives = 248/370 (67.03%), Query Frame = 0 

Query: 13  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIF 72
           Q  PSFS+L SSLSDF+GA+LH QVQYKRKV QPKGAL+V+AS++K IL+MGGTRFIG+F
Sbjct: 9   QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLF 68

Query: 73  LSRLLVKEGHQ----------------------------------GDRKDFDFVKSSLSA 132
           LSR+LVKEGHQ                                  GDRKD+DFVKSSLSA
Sbjct: 69  LSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSA 128

Query: 133 AGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE----------- 192
            GFDVVYDINGREA EVEPIL+ALPKLEQ+IYCSSAGVYLKSD+LPH E           
Sbjct: 129 EGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHK 188

Query: 193 ------------------------------------------------------------ 252
                                                                       
Sbjct: 189 GKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLG 248

Query: 253 ---DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 275
              DLATAF+ VLGNEKAS+++FNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
Sbjct: 249 HVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 308

[Close]
BLAST of Carg27418 vs. Swiss-Prot
Match: sp|Q9LYA9|CP41A_ARATH (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41A PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-18
Identity = 69/241 (28.63%), Postives = 97/241 (40.25%), Query Frame = 0 

Query: 101 FDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFE----------- 160
           FDVV D NG++   V P++D      ++QF++ SSAG+Y  ++  PH E           
Sbjct: 158 FDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHV 217

Query: 161 ------------------------------------------------------------ 220
                                                                       
Sbjct: 218 VVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVR 277

Query: 221 DLATAFVQVLGN-EKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFG 268
           DL++     + N E AS  +FN   ++ VT DG+AK CA A G    EIVHY+PK     
Sbjct: 278 DLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVD 337

[Close]
BLAST of Carg27418 vs. TrEMBL
Match: tr|A0A1S3B4I6|A0A1S3B4I6_CUCME (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486073 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 2.5e-136
Identity = 268/383 (69.97%), Postives = 271/383 (70.76%), Query Frame = 0 

Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQ----------------------------------GDR 120
           L+MGGTRFIGIFLSRLLVKEGHQ                                  GDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 E----------------------------------------------------------- 240
           E                                                           
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 ---------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 276
                          DLATAFVQVLGN+KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

[Close]
BLAST of Carg27418 vs. TrEMBL
Match: tr|A0A0A0KZ66|A0A0A0KZ66_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G500330 PE=4 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 4.0e-134
Identity = 263/383 (68.67%), Postives = 269/383 (70.23%), Query Frame = 0 

Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASAKKNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQ----------------------------------GDR 120
           L+MGGTRFIGIFLSRLLVKEGHQ                                  GDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 E----------------------------------------------------------- 240
           E                                                           
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 ---------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 276
                          DLA AFVQVLGN+KASQQVFNISGEKYV+FDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300

[Close]
BLAST of Carg27418 vs. TrEMBL
Match: tr|A0A067JHM3|A0A067JHM3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23195 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 4.7e-119
Identity = 237/380 (62.37%), Postives = 251/380 (66.05%), Query Frame = 0 

Query: 4   MANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVM 63
           MA  +A   Q  PSFS+LPSS SDF+G RLH+Q+Q KRKV Q KGAL VTAS  KNIL+M
Sbjct: 1   MARLVAVQQQTQPSFSLLPSSFSDFNGTRLHSQIQCKRKVWQTKGALQVTASTSKNILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQ----------------------------------GDRKDF 123
           GGTRFIG+FLSRLLVKEGHQ                                  GDRKDF
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDQEYADFSSKILHLKGDRKDF 120

Query: 124 DFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-- 183
           +FVKSSLSA GFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPH E  
Sbjct: 121 EFVKSSLSAKGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHAETD 180

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 181 AVDPKSRHKGKLETESLLESKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 244 ------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEI 276
                       DLA AF+QVLGNEKAS+QVFNISGEKYVTFDGLA+ACAKAGGFPEPE+
Sbjct: 241 SGVQITQLGHVKDLAKAFIQVLGNEKASKQVFNISGEKYVTFDGLARACAKAGGFPEPEL 300

[Close]
BLAST of Carg27418 vs. TrEMBL
Match: tr|A0A1R3KQU9|A0A1R3KQU9_9ROSI (NAD-dependent epimerase/dehydratase OS=Corchorus olitorius OX=93759 GN=COLO4_05521 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 3.4e-117
Identity = 235/370 (63.51%), Postives = 248/370 (67.03%), Query Frame = 0 

Query: 14  KSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVMGGTRFIGIFL 73
           K PS S+LPSSLSDF+G +L  Q+QYKRKV QPKGALHV+AS+ K IL+MGGTRFIG+FL
Sbjct: 12  KQPSISLLPSSLSDFNGTKL-CQIQYKRKVWQPKGALHVSASSTKKILIMGGTRFIGVFL 71

Query: 74  SRLLVKEGHQ----------------------------------GDRKDFDFVKSSLSAA 133
           SRLLVKEGHQ                                  GDRKDFDFVKSSLSA 
Sbjct: 72  SRLLVKEGHQVTLFTRGKAPVTQQLPGESDSDYSNFKSQILHLKGDRKDFDFVKSSLSAE 131

Query: 134 GFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE------------ 193
           G+DVVYDINGREA EVEPILDALP LEQFIYCSSAGVYLKSDLLPH E            
Sbjct: 132 GYDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETDAVDPKSRHKG 191

Query: 194 ------------------------------------------------------------ 253
                                                                       
Sbjct: 192 KLNTESLLESRDVNYTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGNQITQLGH 251

Query: 254 --DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDF 276
             DLATAF+QVLGNEKAS+QVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPK+FDF
Sbjct: 252 VKDLATAFIQVLGNEKASKQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKDFDF 311

[Close]
BLAST of Carg27418 vs. TrEMBL
Match: tr|A0A1S3YUW3|A0A1S3YUW3_TOBAC (chloroplast stem-loop binding protein of 41 kDa b, chloroplastic-like OS=Nicotiana tabacum OX=4097 GN=LOC107779937 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 3.4e-117
Identity = 235/378 (62.17%), Postives = 253/378 (66.93%), Query Frame = 0 

Query: 4   MANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASAKKNILVM 63
           MA+ +A  H K PSF+VLPSS SDF+GA+L + +Q+KRK  QPKGALHVTAS+ K IL+M
Sbjct: 1   MASLVAVQH-KQPSFAVLPSSHSDFNGAKLISSLQFKRKPCQPKGALHVTASSAKKILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQ----------------------------------GDRKDF 123
           GGTRFIG+FLSRLLVKEGHQ                                  GDR DF
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPISQQLPGESDQDYADFSSKLLHLKGDRMDF 120

Query: 124 DFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE-- 183
           DFVKSSLSA GFDVVYDINGREAVEVEPILDALP LEQ+IYCSSAGVYLK+D LPHFE  
Sbjct: 121 DFVKSSLSAEGFDVVYDINGREAVEVEPILDALPNLEQYIYCSSAGVYLKTDYLPHFEAD 180

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 181 AVDPKSRHKGKLETESLLESRDVNWTSVRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 244 ------------DLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEI 274
                       DLATAF+QVLGNEKAS+QVFNISGEKYVTFDGLAKACAKAGGFPEPEI
Sbjct: 241 SGLQITQLGHVKDLATAFIQVLGNEKASKQVFNISGEKYVTFDGLAKACAKAGGFPEPEI 300

The following BLAST results are available for this feature:
BLAST of Carg27418 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961476.14.3e-14071.80chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita mosc... [more]
XP_023515393.11.6e-13971.54chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita pepo... [more]
XP_022968745.11.2e-13771.02chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucurbita maxi... [more]
XP_008442117.13.8e-13669.97PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cuc... [more]
XP_004146391.16.0e-13468.67PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cuc... [more]
BLAST of Carg27418 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09340.16.6e-11961.62chloroplast RNA binding[more]
AT3G63140.17.0e-2028.63chloroplast stem-loop binding protein of 41 kDa[more]
BLAST of Carg27418 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SA52|CP41B_ARATH1.2e-11761.62Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ... [more]
sp|Q9LYA9|CP41A_ARATH1.3e-1828.63Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ... [more]
BLAST of Carg27418 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4I6|A0A1S3B4I6_CUCME2.5e-13669.97chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Cucumis melo... [more]
tr|A0A0A0KZ66|A0A0A0KZ66_CUCSA4.0e-13468.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G500330 PE=4 SV=1[more]
tr|A0A067JHM3|A0A067JHM3_JATCU4.7e-11962.37Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23195 PE=4 SV=1[more]
tr|A0A1R3KQU9|A0A1R3KQU9_9ROSI3.4e-11763.51NAD-dependent epimerase/dehydratase OS=Corchorus olitorius OX=93759 GN=COLO4_055... [more]
tr|A0A1S3YUW3|A0A1S3YUW3_TOBAC3.4e-11762.17chloroplast stem-loop binding protein of 41 kDa b, chloroplastic-like OS=Nicotia... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27418-RACarg27418-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.720coord: 142..248
e-value: 3.4E-13
score: 51.4
NoneNo IPR availablePANTHERPTHR43725:SF2CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA B, CHLOROPLASTICcoord: 49..83
NoneNo IPR availablePANTHERPTHR43725:SF2CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA B, CHLOROPLASTICcoord: 83..147
NoneNo IPR availablePANTHERPTHR43725FAMILY NOT NAMEDcoord: 49..83
NoneNo IPR availablePANTHERPTHR43725:SF2CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA B, CHLOROPLASTICcoord: 145..271
NoneNo IPR availablePANTHERPTHR43725FAMILY NOT NAMEDcoord: 83..147
NoneNo IPR availablePANTHERPTHR43725FAMILY NOT NAMEDcoord: 145..271
IPR036291NAD(P)-binding domain superfamilySUPERFAMILYSSF51735NAD(P)-binding Rossmann-fold domainscoord: 57..246

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg27418Cla010956Watermelon (97103) v1carwmB0740
Carg27418ClCG01G010830Watermelon (Charleston Gray)carwcgB0720
Carg27418CmaCh10G011700Cucurbita maxima (Rimu)carcmaB1039
Carg27418CmoCh10G012490Cucurbita moschata (Rifu)carcmoB1011
Carg27418Lsi02G011420Bottle gourd (USVL1VR-Ls)carlsiB680
Carg27418Cp4.1LG18g00150Cucurbita pepo (Zucchini)carcpeB1046
Carg27418Cla97C01G010590Watermelon (97103) v2carwmbB0778
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None