Cp4.1LG18g00150 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g00150
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	NAD dependent epimerase/dehydratase, putative
Location	Cp4.1LG18 : 230569 .. 238976 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGCAGGGTAATGGGTTGAAGTTGAACGAGAGGTGGAGGCAAATCATAGTCTTATCCTCAAAACATTGGAACGAAATCCAGCCAGAGAAACAGAAGCCATGCCTTCACAAGAACATCCTTTCAAATCCATTACCCTTTTAATCCCACCACCAAGCAGCAAGAACACAGGGTTTCCAAATGGGTATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATCGCCTTCATTCTCTGTTCTTCCTTCTTCACTTTCCGACTTCCATGGCGCCAGACTCCACGCTCAAGTTCAGGTCCCTTTCTCTTCTCTTTCCTTGTTCATGTTTCTAATCTGGGTATCATTTTTTACTCTTGAATCTTGATTCAAACTGGAAATCCTTGATGGGTTTTGTTGTTATGGCATCAAAATCACTGGATATTGATTTGGGTGTCCCTATAAATGGATATTGATTCAGATTTCGGAGGGAAAAGACTCATTTCTCATTCGAGATAGGGGTAGGGGAGTTATTGTGAAGCTGTCAAAGGCGGAAACGGCAAATAGCTTCTACTGAGTTTCCCAACCCTTAGATTAGTAGCTCAACTCTTTCGATTGGCGTGACACTGCTAGATGCTTCTGATCAATATTAGAGCCAGACACTAGGCGATGTGCTAGTGAGGAGACGGTTCTCCGAATGGGGTAGCATGAGACAGTGTGCCAGGCCTGGAAGGGGGTGGATTTGGTGGGGTTCTCACATCGATTGGAGAAAGGAACGAGTGCCAGCGAGGACGCTGGGCCCTGAAGGAGGTGGATTGTAAGATCCCACATCGGTTGGGGAGGAAAACGAAACACACCTTGTAAGGGTGTGGAAACCTCTCCCTAGCAAACGCGTTTTAAAAACCTTGAGGGGAATCTTGAAGGGAAAAGCCCATAGAGGACAATATCTATTAGGCGGAAACGGCAAATAGCTTCTACCGAGTTCCCCAACCCTTAGATTAGTAGCTCAACTCTTTCGATTGGCGTGACACTACTAGATGCTTCTGATCAGTATCAGAGCCAGACACTGGGCGATGTGCCAGTGAGGAGACTGTTCTCCGAAGGGGGTTGCATGAGGTGGTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGTGGATTTGGTGGGGGTCCCACATCGATTGGAGAAAGGAACGAGTGGGCCCTGAAGGGGGTGAATTGTAAGATCCCACATCGGTTGGGGTGGAGAACGAAAGCGCGATGTGCCAGTGAGGAGGCGGTGTGCCAATATGGACGCTGGCTCAAAGGGGGTGGATTTGGTAGGGGTCCCACATCGATTGGAGAAAGGAACGAGTGCCAGCGAGGACGTTGGGCCCTGAAGGGGGGTGGATTGTAAGATCCCACATCGGTTGGGGAGGAGAACAAAACACCATTTATAAGGGTGTGGAAACCTCTCCCTAGCAGAAGCGTTTTAAAACCTTTGAGGGGAAACCTGAAAGGGAAAACCCAGAGAGGACAATATCTACTAGTGGTGAGCTTGGGCCGTTAGAGTCAGGAATAGGAGAATCGAATCTAGTTCAAGTTTTTTATTATGTACCTGTGTCTTTTGTTGGGATATGAAGCCTACAGTGAAAGACGGTAATTCGAGTGTGCATTGTTGTGCGATCTTAACATTTTTTTTGCTCTAAAACCGAGTTAAACTAGCTTAAGTCGTTGATTTATATGTATTCTCAATTGGGTTTGGTCTGGATTGCAGTATAAGAGGAAGGTTATGCAGCCAAAAGGGGCATTACATGTTACAGCTAGCGCCAACAAGAACATCCTTGTAATGGGTGGCACCAGATTTATTGGTATCTTCTTGTCTAGACTTCTTGTCAAAGAGGGCCATCAGGTTAAGCCATTCTCCTTCTTCTTGCTTTGCTTGCTAGCTACAGATTCTCATTAGAAAGATTCATAGAGCTTGTTAATTATGGCAGGTGACTTTGTTTACAAGAGGAAAAGCGCCTGTTACGCAACAATTGCCCGGCGAGTCGGATGCAGATTATGCTGATTTTAAATCCAAGGTCTTCTAAGCTTTCATTCATGTGATATCCTACGTTGGTTGGGGAGGAGAACGGAACACCCTTTGTAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAACCTTGAGGGGAGTAATGTGCTAGCAAGGAGGCTGTTCCTTGAAAGGGGTAGACATGAGGCGGTGTGCCAGTAAGGATGCTGGGCCTCGAAGGGGGTGGATTTGGTGGAGGTCCCACATCGATTGGAAAAAGGAACGAGTACCAACGAGGACGCTGGGCCCTGAAGGGGGGGTGGATTGTGATATCCCATATTGGTTGGGGAGGAGAATGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATATGCGTTTTAAAAACCTTGAGGGGAGTAATGTGTCAACGAGGAGCCTGTTCCCCAAAGGGGGTTAGACATGAGGCGGTGTGTCAGTAAGGATGTTGGCCCCGAAGGGAGGAAGATTTGGTGGGGATCCTACATCGATTGGAAAAAGGAATGGGTGTCAATGAGGACGCTGGGCCCTGAAAGAGGTGGATTGTGATATCCCACATTGGTTGGGGAGGAGAACGAAATACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGACGCGTTTTAAAAATCTTGAGGGGAAGCCCGAAAGGGAAAACTCAAAGAGGACAATATCTGCTAGGTGGGTCTGGGCCGTTACAAATAGTATCAGAGCCAGAGGTAATGTGCCAGCGAGGAGGCTGTTCCCCGAAGGGGGGTAGACATGAGACGGTGTGCCAGTAATGACGCTGGCCCTGAAGGGAGGTGGATTTAGTGGGGTCCTACATCGATTGGAAAAAGGAACGAGTGTCAGTGAGGATGTTGGGCCCTAAAGGGGGGTGGATTGTGATATCTCATATCGGTTGGAGAGGAGAACGAAACATCCTTTATAAAGGTGTGGTCCTACATCGATTGGAAAAAGAAACGAGTGTCAGTGAGGACGCTGGGCCCTGAAGGGGGGTGGATTGTGATATCCTATATTGGTTGGGAAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGACGCATTGTAAAAATCTTGAGGGGAAGCCTGAAAGGGAAAGACCATCGATTGGAAAAAGAAACGAGTGTCAGTGAGGATGCTGGGCCCTGAAGGGGGGTGGATTGTGATATCCTATATTGGTTGGGAAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGACGCATTGTAAAAATCTTGAGGGGAAGCCTGAAAGGGAAAGACCATCGATTGGAAAAAGAAACGAGTGTCAGTGAGGATGCTGGGCCCTGAAGGGGGGTGGATTGTGATATCCTATATTGGTTGGGAAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGACGCATTGTAAAAATCTTGAGGGGAAGCCTGAAAGGGGAAGCCTGAAAGGGAAAGCCCAAAGAGGACTATATCTGCTAGCAATAGGCCTTGACTGTTACAAGTAGTATTAGAGTCAGACACCAGACAATGTGGCAACGAGGATGCTCTTCCTCGAAGGGGGTAGATACGAGGCGGTGTGCCAGTAAGGACACTGGGCTCCGACCAAAGGGGGCGGATTTGGTGAGGGTCCCACATCGATTGGAAAAAGGAACAAGTGCCAACGAGGAGGAGAACGAAACACCCTTTGTAAGGGTGTGGAAACTTCTCCCTAGACGCGTTTTAAAAGCCTTGAGGTGAACCCCGAAAGGGAAAGCCCAAAGAAGGGGTGGATTGTGATATCCCGTATTGGTTGGGGAGGAGAACGAAACACCCTTTATAAGGGTATGAAAACCTCTCCCTAGAAGCGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGAGAAAGCCTAAAGAAAACAATATCTACTAGCGGTGACCCTGAGTCGTTACAATTTAAGCCTTATAATTCGGTAGCTCAAGAAATGTGGTTTAATGATTTTATTTGATTCATATGTTCCAGGTTCTACATTTGAAAGGAGACAGAAAAGACTTTGATTTTGTGAAATCGAGCCTCTCGGCTGCAGGGTTCGATGTCGTTTACGACATAAATGGTGTGTATGATTCTGGATTGATCTGTTTTGGTTTGAAGTTCTTCACCCTGATACTCACTGCTGCTTGATTTCAGGGCGAGAAGCAGTTGAAGTTGAACCAATTTTAGATGCATTGCCTAAGCTAGAGCAGTAAGATTCCCTAAATGATATCCACTTTCTTTTATATGTTAGTTGCTGATATTATTACTTTTATATGCTTCGAGGTCGTATGTTCGAATCATGGTGATCGTCTGGTTGAAATATTAAATGTTCTTTTAAGTTTCCCGAACTCATTGTTATATTGTTCGGTAGCTGTCCCATGACATTAGTACAGTACATAAGTGTGAGGTCCCGTATCGGTTGGAGAGGAGAACGAAGCATTCCTTATAAGGGTGTGGAAATCTCTCCCTAGGAGACGTGTTTTAAAACCGTGAGGCTGACAGTGATACGTAACGGGCTGAAACGGACAATTACTGCTAGCTATGGGCTTAAGCTGTTACAAATGGTATCAGAATCAGACACTGGGCAGTGTGGCAGTGAGGACGCTGGGCCCTCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTAGAGAGGGGAACGATGCATTCCTTATAAGGGTGTGAAAACCTCTTCCAAGCAGACGTGTTTTTAAATTGTGAGGTTGACAACGATACGTAATGGGCCGAAGCGGACAATATCTACTCGTAGTGGGCTTGGGTTGTTACAAATAGTATTAGAACCATACACCGGGCAGTGTGCCAGCAAGGACGCTAGGCCCCCAAAGAGGGTGGATTGTGAGATCCCACATTGGTTGGAGCGGGGAACGAAACATTCCTTATAAGAGTGTGGAAACCTCTATCTAGAAGACCCGTTTTAAAACCGTGAGGCTGACGGTGCTACATAACAGGTCGAAGCAAACAATATCTGCTAGCGGTGGGCTTTGAATGTTATAAATGGTATCAGAGCCAGACACTGGACAGTGTGCCAGCAAGGAAGCTGGCCCCTAAGGGGGGTGGATTGTGAGATCCCACCTCAGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAATCTCTCCCTAGCAAACGCGTTTTAAAACTGTGAGGCTGACAGTGATACATAACGGGCCAAAGGTGACAATATCTGCTAGCGGTGGCCTTGGGCTATTACAAATGATATCAGAGCAGACATCGAGCAGTGTGCCAGTGAGGACGTTGGGCCCCCAAAGTGGGTGAATTGTGAGATCCCACATCGGTTGGAGAGGGAAACAAAGCATTCCTTGTAAGGGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAACCTTGAGTCTGACGGTGATACGTAACGGTCGAAGCGGACAATATCTGCTAGTGGTAGGCTTGGGCTGTTACAAATTGTATCAGAGCTAAACACCGGGCAGTGTGCCAACGAGGACGCTGACCCTTTAGGGGGTAGATTGTGAGATCTCACATCGATTGGAGAGTGGAACAAAACATTCCTTATAAGGGTGTGGAACTTCTTCTTAGCAGACTCTTTTTAAAACCGTGAGGCTAACGGTGATACGTAACAAGTCGAAGCGAACAATATCTGCTAGTGGTGGACTTGGGCTATTACAAATAGTATTAGAGCCAGACACCGAGCAGTGTGCTAGCGAGGATGCTGAGCCCCCAAGTGAGATAGATTGTGAGATCTAACACGGTTGGAGAGGGGAACAAAGCATTCTTTGTAAGGGTGTGGAAACCTCTCCCTAGAAGACGTGTTTTAAAACTGTGAGGCTGACGGTGATACATAATGGGCCCGCCAAAGCGGAGAATATCTGTTAACGGTGAGCTTGAGCTATTACAAATGGTATCAAGGCCAAACACCGGGCAGTGTGCCAGCGAGGACGCTGGGCCCCCAAAGGAGGTGGATTGTGAGATCCCACATCGGTTAGAAAGGAGAACGAAACATTTCTTATCAGGGTGTGAAAACCTCTCTCTCTAGCAAACGTGTTTTAAAACTATGAGGCTGACGGTGATACGTAACGGGCCGAAGTGGACAATATCTCGACTGTTATAATAAGCTAGTCCAAACATTAGGGTTCATAACAAAACATAGCATGGAATGTGATGTATCTAATTATTCTCAGGTTTATATACTGTTCTTCAGCGGGTGTTTACCTCAAATCTGATCTCCTACCTCACTTTGAGGTACCTTTCAGTTTACTTTCTTTGTCAAATACCAAATAAATGGTTCACTCAAAGCTTGACCTCGACTTTGCTTTCATATCATAGGTAGACGCAGTCGATCCAAAGAGTCGACACAAGGGAAAGCTCGAGACGGAAAGCTTACTGGCATCGAAGGATGTTAACTGGACATCTATAAGACCCGTCTACATCTATGGACCATTGAACTACAACCCTGTGGAGGAATGGTTCTTCCACCGGTTGAAAGCTGGTCGCCCCATTCCGATACCCAACTCGGGCATTCAAATTACTCAACTCGGTCACGTCAAGGTCTGTGCTACTATGTACTATTTATGCAACAGGAACAAACCGTTAAGTCTGTTGTAACTATGAGATCCCACATCAGTTGAAGAGAGGAACGAAACATTTTTTATTAGGGTGTGGAAACCTGTGAGAATCCCATCTTGGTTGGGGAGGAGAACGAAACACCCTTTATAAGAGCATGGAAACCTTTCCCTAGAAGACGTGTTTTAAAGCCGTGAGGGGAAGCTCGAAAGAGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAAACTTCTCCCTAGTAAACACGTTTTAAAAACCTTGCCCAAAGAGGACAATATCTGCTAGCGGTGGGGTTGAGCTGTTACAAAACCTCTCCCTAGTAGACACGTTTTAAAAACCTTATCCAAAGAGGACAATATTTGCTAGTGGTGGACTTGAGCTTGAGCTTGAGCTTGAGCTGTTACAAAACCTCTTCTTGGTAGACACGTTTTAAAAACCTTGTTTAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCTGTTACAAAACCTCTCCCCAGTAGACACATTCTAAAAACCTTGTCCAAAGAGGACAATATCTGCTAGCAGTGGGCTTGAGCTTGAGCTTGAGCTGTCACAAAACCTCTCCCTAGTAGACACGTTTTAAAAACCTTGTCCAAAGAGGACAATATCTGCTACCGGTGGGCTTGAGCTTGAGCTTGAGCTGTTACAAAACCTCTCTCTGGTAGACACGTTTTAAAAACCTTGTTTAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCTGTTACAATAACGGTCCTAAAAAGCATTCACGGCCGTAGTGTAAATTGTTTAGGAAACGAAATCGAGTAAATGATTGAACGTTTTTTTACGACCGCAGGATTTGGCAACAGCTTTTGTTCAAGTTCTTGGTAATGAAAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTGACATTTGATGGGTTAGCCAAAGCTTGTGCAAAGGTACTTTCTTGGAGACATAATCAGCACACCATGGTATTCATTGTAGAGCTAATATCTAAACTGGCTCACTTCGCAGGCTGGAGGCTTTCCCGAGCCCGAGATCGTCCACTATAACCCGAAGGAGTTCGATTTTGGAAAAAAGAAGCCATTCCCTTTCCGTGATCAGGTAATCTCGTCAACGTAATGATAAGTTCGATGATTCTAATTGCTCGAAATAGCACTGTTCGTATTGATATATAATGTAATGCAGCATTTCTTTGCGTCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAGTTCGATTTGGTCGAAGGACTTACCGACTCCTACAACTTGGACTTCGGCCGAGGCACTTTCAGGAAAGAGGCTGATTTCTCAACAGATGACATAATCCTTGGCAAGAGCCTAGTTCTTCAAGCTTGAGGCATCGTTCTCTTTCGTTTTTTACCCGATCTAAACGGATTTATCGACGGATCTCGGGTCGAGATATCGATTTAAATTTGTATGTATGTGGAGATTTGTTTGAGTTTTTGCTCTAGTTTCATCAAGTGGCAAGCAATTGGTTCATATTTTTCTAGCTTTTAGGCATATCGAGCTCAATGTTGGATAGTATTCTCGAGCACGTCAATGTCGTAAAGTTTTTTAAAAGTGACAAACAAACCTAAAAAAAATTGGTAAATTTTAAGTTTTTTAAAATTAAAATTATTATCAAACACGAGAAAAATACTCGTAAAGAAGAAATATTATGGTTGGTTGGTTTGCTTA

mRNA sequence

CGGGCAGGGTAATGGGTTGAAGTTGAACGAGAGGTGGAGGCAAATCATAGTCTTATCCTCAAAACATTGGAACGAAATCCAGCCAGAGAAACAGAAGCCATGCCTTCACAAGAACATCCTTTCAAATCCATTACCCTTTTAATCCCACCACCAAGCAGCAAGAACACAGGGTTTCCAAATGGGTATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATCGCCTTCATTCTCTGTTCTTCCTTCTTCACTTTCCGACTTCCATGGCGCCAGACTCCACGCTCAAGTTCAGTATAAGAGGAAGGTTATGCAGCCAAAAGGGGCATTACATGTTACAGCTAGCGCCAACAAGAACATCCTTGTAATGGGTGGCACCAGATTTATTGGTATCTTCTTGTCTAGACTTCTTGTCAAAGAGGGCCATCAGGTTCTACATTTGAAAGGAGACAGAAAAGACTTTGATTTTGTGAAATCGAGCCTCTCGGCTGCAGGGTTCGATGTCGTTTACGACATAAATGGGCGAGAAGCAGTTGAAGTTGAACCAATTTTAGATGCATTGCCTAAGCTAGAGCAGTTTATATACTGTTCTTCAGCGGGTGTTTACCTCAAATCTGATCTCCTACCTCACTTTGAGGTAGACGCAGTCGATCCAAAGAGTCGACACAAGGGAAAGCTCGAGACGGAAAGCTTACTGGCATCGAAGGATGTTAACTGGACATCTATAAGACCCGTCTACATCTATGGACCATTGAACTACAACCCTGTGGAGGAATGGTTCTTCCACCGGTTGAAAGCTGGTCGCCCCATTCCGATACCCAACTCGGGCATTCAAATTACTCAACTCGGTCACGTCAAGGATTTGGCAACAGCTTTTGTTCAAGTTCTTGGTAATGAAAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTGACATTTGATGGGTTAGCCAAAGCTTGTGCAAAGGCTGGAGGCTTTCCCGAGCCCGAGATCGTCCACTATAACCCGAAGGAGTTCGATTTTGGAAAAAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCGTCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAGTTCGATTTGGTCGAAGGACTTACCGACTCCTACAACTTGGACTTCGGCCGAGGCACTTTCAGGAAAGAGGCTGATTTCTCAACAGATGACATAATCCTTGGCAAGAGCCTAGTTCTTCAAGCTTGAGGCATCGTTCTCTTTCGTTTTTTACCCGATCTAAACGGATTTATCGACGGATCTCGGGTCGAGATATCGATTTAAATTTGTATGTATGTGGAGATTTGTTTGAGTTTTTGCTCTAGTTTCATCAAGTGGCAAGCAATTGGTTCATATTTTTCTAGCTTTTAGGCATATCGAGCTCAATGTTGGATAGTATTCTCGAGCACGTCAATGTCGTAAAGTTTTTTAAAAGTGACAAACAAACCTAAAAAAAATTGGTAAATTTTAAGTTTTTTAAAATTAAAATTATTATCAAACACGAGAAAAATACTCGTAAAGAAGAAATATTATGGTTGGTTGGTTTGCTTA

Coding sequence (CDS)

ATGGGTATCATGGCAAACCCAATGGCTGCTCACCACCAAAAATCGCCTTCATTCTCTGTTCTTCCTTCTTCACTTTCCGACTTCCATGGCGCCAGACTCCACGCTCAAGTTCAGTATAAGAGGAAGGTTATGCAGCCAAAAGGGGCATTACATGTTACAGCTAGCGCCAACAAGAACATCCTTGTAATGGGTGGCACCAGATTTATTGGTATCTTCTTGTCTAGACTTCTTGTCAAAGAGGGCCATCAGGTTCTACATTTGAAAGGAGACAGAAAAGACTTTGATTTTGTGAAATCGAGCCTCTCGGCTGCAGGGTTCGATGTCGTTTACGACATAAATGGGCGAGAAGCAGTTGAAGTTGAACCAATTTTAGATGCATTGCCTAAGCTAGAGCAGTTTATATACTGTTCTTCAGCGGGTGTTTACCTCAAATCTGATCTCCTACCTCACTTTGAGGTAGACGCAGTCGATCCAAAGAGTCGACACAAGGGAAAGCTCGAGACGGAAAGCTTACTGGCATCGAAGGATGTTAACTGGACATCTATAAGACCCGTCTACATCTATGGACCATTGAACTACAACCCTGTGGAGGAATGGTTCTTCCACCGGTTGAAAGCTGGTCGCCCCATTCCGATACCCAACTCGGGCATTCAAATTACTCAACTCGGTCACGTCAAGGATTTGGCAACAGCTTTTGTTCAAGTTCTTGGTAATGAAAAGGCAAGCCAGCAAGTATTCAATATCTCTGGTGAAAAATATGTGACATTTGATGGGTTAGCCAAAGCTTGTGCAAAGGCTGGAGGCTTTCCCGAGCCCGAGATCGTCCACTATAACCCGAAGGAGTTCGATTTTGGAAAAAAGAAGCCATTCCCTTTCCGTGATCAGCATTTCTTTGCGTCGGTTGAGAAAGCGAAGAGCGTGCTCGGGTGGAAGCCCGAGTTCGATTTGGTCGAAGGACTTACCGACTCCTACAACTTGGACTTCGGCCGAGGCACTTTCAGGAAAGAGGCTGATTTCTCAACAGATGACATAATCCTTGGCAAGAGCCTAGTTCTTCAAGCTTGA

Protein sequence

MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVMGGTRFIGIFLSRLLVKEGHQVLHLKGDRKDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVLQA

Homology

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BLAST of Cp4.1LG18g00150 vs. Swiss-Prot
Match: CP41B_ARATH (Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 9.3e-176
Identity = 302/370 (81.62%), Postives = 323/370 (87.30%), Query Frame = 1


Query: 13  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVMGGTRFIGIF 72
           Q  PSFS+L SSLSDF+GA+LH QVQYKRKV QPKGAL+V+AS+ K IL+MGGTRFIG+F
Sbjct: 9   QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLF 68

Query: 73  LSRLLVKEGHQV-----------------------------LHLKGDRKDFDFVKSSLSA 132
           LSR+LVKEGHQV                             LHLKGDRKD+DFVKSSLSA
Sbjct: 69  LSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSA 128

Query: 133 AGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHK 192
            GFDVVYDINGREA EVEPIL+ALPKLEQ+IYCSSAGVYLKSD+LPH E DAVDPKSRHK
Sbjct: 129 EGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHK 188

Query: 193 GKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLG 252
           GKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNSGIQI+QLG
Sbjct: 189 GKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLG 248

Query: 253 HVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 312
           HVKDLATAF+ VLGNEKAS+++FNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
Sbjct: 249 HVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 308

Query: 313 FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDD 354
           FGKKK FPFRDQHFFASVEKAK VLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADF+TDD
Sbjct: 309 FGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDD 368

[Close]

BLAST of Cp4.1LG18g00150 vs. Swiss-Prot
Match: CP41A_ARATH (Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.1e-46
Identity = 100/244 (40.98%), Postives = 137/244 (56.15%), Query Frame = 1


Query: 106 FDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHK 165
           FDVV D NG++   V P++D      ++QF++ SSAG+Y  ++  PH E DAV   + H 
Sbjct: 158 FDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGH- 217

Query: 166 GKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLG 225
             +  E  LA    NW S RP Y+ G  N    EEWFF R+   R +PIP SG+Q+T + 
Sbjct: 218 --VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNIS 277

Query: 226 HVKDLATAFVQVLGN-EKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEF 285
           HV+DL++     + N E AS  +FN   ++ VT DG+AK CA A G    EIVHY+PK  
Sbjct: 278 HVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAI 337

Query: 286 DFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTD 345
               KK F FR+ HF+A    AK +LGW+ + +L E L + +      G  +KE  F  D
Sbjct: 338 GVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELD 397

Query: 346 DIIL 347
           D IL
Sbjct: 398 DKIL 397

[Close]

BLAST of Cp4.1LG18g00150 vs. TrEMBL
Match: A0A0A0KZ66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G500330 PE=4 SV=1)

HSP 1 Score: 687.6 bits (1773), Expect = 8.2e-195
Identity = 341/383 (89.03%), Postives = 347/383 (90.60%), Query Frame = 1


Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASA KNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQV-----------------------------LHLKGDR 120
           L+MGGTRFIGIFLSRLLVKEGHQV                             LHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLA AFVQVLGN+KASQQVFNISGEKYV+FDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRG 355
           PEIVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKSVLGWKPEFDLVEGL DSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

[Close]

BLAST of Cp4.1LG18g00150 vs. TrEMBL
Match: A0A067JHM3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23195 PE=4 SV=1)

HSP 1 Score: 633.3 bits (1632), Expect = 1.8e-178
Identity = 312/380 (82.11%), Postives = 328/380 (86.32%), Query Frame = 1


Query: 4   MANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVM 63
           MA  +A   Q  PSFS+LPSS SDF+G RLH+Q+Q KRKV Q KGAL VTAS +KNIL+M
Sbjct: 1   MARLVAVQQQTQPSFSLLPSSFSDFNGTRLHSQIQCKRKVWQTKGALQVTASTSKNILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQV-----------------------------LHLKGDRKDF 123
           GGTRFIG+FLSRLLVKEGHQV                             LHLKGDRKDF
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDQEYADFSSKILHLKGDRKDF 120

Query: 124 DFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVD 183
           +FVKSSLSA GFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPH E D
Sbjct: 121 EFVKSSLSAKGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHAETD 180

Query: 184 AVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 243
           AVDPKSRHKGKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN
Sbjct: 181 AVDPKSRHKGKLETESLLESKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 244 SGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEI 303
           SG+QITQLGHVKDLA AF+QVLGNEKAS+QVFNISGEKYVTFDGLA+ACAKAGGFPEPE+
Sbjct: 241 SGVQITQLGHVKDLAKAFIQVLGNEKASKQVFNISGEKYVTFDGLARACAKAGGFPEPEL 300

Query: 304 VHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFR 355
           VHYNPKEFDFGKKK FPFRDQHFFAS+EKAK VLGWKPEFDLVEGL DSYNLDFGRGTFR
Sbjct: 301 VHYNPKEFDFGKKKAFPFRDQHFFASIEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTFR 360

[Close]

BLAST of Cp4.1LG18g00150 vs. TrEMBL
Match: V4KDW6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007937mg PE=4 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 5.5e-175
Identity = 303/371 (81.67%), Postives = 325/371 (87.60%), Query Frame = 1


Query: 13  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVMGGTRFIGIF 72
           Q  PSFS+L SSLSDF+GA+LH QVQYKRKV QPKGAL+V+AS+ K IL+MGGTRFIG+F
Sbjct: 9   QSQPSFSLLTSSLSDFNGAKLHLQVQYKRKVYQPKGALYVSASSEKKILIMGGTRFIGVF 68

Query: 73  LSRLLVKEGHQV-----------------------------LHLKGDRKDFDFVKSSLSA 132
           LSRLLVKEGHQV                             LHLKGDRKD+DFVKSSLSA
Sbjct: 69  LSRLLVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSA 128

Query: 133 AGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHK 192
            GFDVVYDINGREA EVEPI+DALPKLEQ+IYCSSAGVYLKSD+LPH EVDAVDPKSRHK
Sbjct: 129 EGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEVDAVDPKSRHK 188

Query: 193 GKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLG 252
           GKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNSGIQI+QLG
Sbjct: 189 GKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLG 248

Query: 253 HVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 312
           HVKDLATAF+ VLGNEKAS+++FNISGEKYVTFDGLA+ACAKAGGFPEPEIVHYNPKEFD
Sbjct: 249 HVKDLATAFLAVLGNEKASREIFNISGEKYVTFDGLARACAKAGGFPEPEIVHYNPKEFD 308

Query: 313 FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDD 355
           FGKKK FPFRDQHFFASVEKAK VLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADF+TDD
Sbjct: 309 FGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDD 368

[Close]

BLAST of Cp4.1LG18g00150 vs. TrEMBL
Match: A9PJN1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 621.7 bits (1602), Expect = 5.5e-175
Identity = 306/380 (80.53%), Postives = 328/380 (86.32%), Query Frame = 1


Query: 4   MANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVM 63
           MA  +A   Q  PSFS+LPSSLSDF+G RLH+QVQ KR+V Q KGAL V+AS++KNIL+M
Sbjct: 1   MARLVAVQQQTQPSFSLLPSSLSDFNGTRLHSQVQCKRRVWQTKGALQVSASSSKNILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQV-----------------------------LHLKGDRKDF 123
           GGTRFIG+FLSRLLVKEGHQV                             LHLKGDRKDF
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDQDYSDFSSKILHLKGDRKDF 120

Query: 124 DFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVD 183
           +FVK+SL+A GFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPH E D
Sbjct: 121 EFVKTSLAAKGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHSEKD 180

Query: 184 AVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 243
           AVDPKSRHKGKLETESLL S+ VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN
Sbjct: 181 AVDPKSRHKGKLETESLLESRGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 244 SGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEI 303
           SGIQ+TQLGHVKDLA AF+QVLGNEKASQQVFNISGEKYVTFDGLAKACAKA GFPEPEI
Sbjct: 241 SGIQMTQLGHVKDLAKAFIQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAAGFPEPEI 300

Query: 304 VHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFR 355
           VHYNPK+FDFGKKK FPFRDQHFFAS++KAK VLGW+PEFDLVEGL DSYNLDFGRGT+R
Sbjct: 301 VHYNPKDFDFGKKKAFPFRDQHFFASIDKAKHVLGWEPEFDLVEGLADSYNLDFGRGTYR 360

[Close]

BLAST of Cp4.1LG18g00150 vs. TrEMBL
Match: E4MWA3_EUTHA (mRNA, clone: RTFL01-02-I12 OS=Eutrema halophilum PE=2 SV=1)

HSP 1 Score: 621.3 bits (1601), Expect = 7.2e-175
Identity = 302/371 (81.40%), Postives = 325/371 (87.60%), Query Frame = 1


Query: 13  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVMGGTRFIGIF 72
           Q  PSFS+L SSLSDF+GA+LH QVQYKRKV QPKGAL+V+AS+ K IL+MGGTRFIG+F
Sbjct: 9   QSQPSFSLLTSSLSDFNGAKLHLQVQYKRKVYQPKGALYVSASSEKKILIMGGTRFIGVF 68

Query: 73  LSRLLVKEGHQV-----------------------------LHLKGDRKDFDFVKSSLSA 132
           LSRLLVKEGHQV                             LHLKGDRKD+DFVKSSLSA
Sbjct: 69  LSRLLVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSA 128

Query: 133 AGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHK 192
            GFDVVYDINGREA EVEPI+DALPKLEQ+IYCSSAGVYLKSD+LPH EVDAVDPKSRHK
Sbjct: 129 EGFDVVYDINGREAEEVEPIIDALPKLEQYIYCSSAGVYLKSDILPHCEVDAVDPKSRHK 188

Query: 193 GKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLG 252
           GKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNSGIQI+QLG
Sbjct: 189 GKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLG 248

Query: 253 HVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 312
           HVKDLATAF+ VLGNEKAS+++FNISGEKY+TFDGLA+ACAKAGGFPEPEIVHYNPKEFD
Sbjct: 249 HVKDLATAFLAVLGNEKASREIFNISGEKYITFDGLARACAKAGGFPEPEIVHYNPKEFD 308

Query: 313 FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDD 355
           FGKKK FPFRDQHFFASVEKAK VLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADF+TDD
Sbjct: 309 FGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDD 368

[Close]

BLAST of Cp4.1LG18g00150 vs. TAIR10
Match: AT1G09340.1 (AT1G09340.1 chloroplast RNA binding)

HSP 1 Score: 617.5 bits (1591), Expect = 5.3e-177
Identity = 302/370 (81.62%), Postives = 323/370 (87.30%), Query Frame = 1


Query: 13  QKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVMGGTRFIGIF 72
           Q  PSFS+L SSLSDF+GA+LH QVQYKRKV QPKGAL+V+AS+ K IL+MGGTRFIG+F
Sbjct: 9   QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLF 68

Query: 73  LSRLLVKEGHQV-----------------------------LHLKGDRKDFDFVKSSLSA 132
           LSR+LVKEGHQV                             LHLKGDRKD+DFVKSSLSA
Sbjct: 69  LSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSA 128

Query: 133 AGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHK 192
            GFDVVYDINGREA EVEPIL+ALPKLEQ+IYCSSAGVYLKSD+LPH E DAVDPKSRHK
Sbjct: 129 EGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHK 188

Query: 193 GKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLG 252
           GKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP+PNSGIQI+QLG
Sbjct: 189 GKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLG 248

Query: 253 HVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 312
           HVKDLATAF+ VLGNEKAS+++FNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD
Sbjct: 249 HVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFD 308

Query: 313 FGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDD 354
           FGKKK FPFRDQHFFASVEKAK VLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADF+TDD
Sbjct: 309 FGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDD 368

[Close]

BLAST of Cp4.1LG18g00150 vs. TAIR10
Match: AT3G63140.1 (AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa)

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-47
Identity = 100/244 (40.98%), Postives = 137/244 (56.15%), Query Frame = 1


Query: 106 FDVVYDINGREAVEVEPILDALPK--LEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHK 165
           FDVV D NG++   V P++D      ++QF++ SSAG+Y  ++  PH E DAV   + H 
Sbjct: 158 FDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGH- 217

Query: 166 GKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLG 225
             +  E  LA    NW S RP Y+ G  N    EEWFF R+   R +PIP SG+Q+T + 
Sbjct: 218 --VVVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNIS 277

Query: 226 HVKDLATAFVQVLGN-EKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEF 285
           HV+DL++     + N E AS  +FN   ++ VT DG+AK CA A G    EIVHY+PK  
Sbjct: 278 HVRDLSSMLTSAVANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAI 337

Query: 286 DFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTD 345
               KK F FR+ HF+A    AK +LGW+ + +L E L + +      G  +KE  F  D
Sbjct: 338 GVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELD 397

Query: 346 DIIL 347
           D IL
Sbjct: 398 DKIL 397

[Close]

BLAST of Cp4.1LG18g00150 vs. NCBI nr
Match: gi|659082960|ref|XP_008442117.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis melo])

HSP 1 Score: 694.9 bits (1792), Expect = 7.3e-197
Identity = 346/383 (90.34%), Postives = 349/383 (91.12%), Query Frame = 1


Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASA KNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQV-----------------------------LHLKGDR 120
           L+MGGTRFIGIFLSRLLVKEGHQV                             LHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLATAFVQVLGN+KASQQVFNISGEKYVTFDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLATAFVQVLGNDKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRG 355
           PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGL DSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

[Close]

BLAST of Cp4.1LG18g00150 vs. NCBI nr
Match: gi|449457309|ref|XP_004146391.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cucumis sativus])

HSP 1 Score: 687.6 bits (1773), Expect = 1.2e-194
Identity = 341/383 (89.03%), Postives = 347/383 (90.60%), Query Frame = 1


Query: 1   MGIMANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNI 60
           MGIMANPMAAHHQK  SFSVLPSSLSDF+GARLHAQVQYKRKVMQPKG LHVTASA KNI
Sbjct: 1   MGIMANPMAAHHQKFTSFSVLPSSLSDFNGARLHAQVQYKRKVMQPKGGLHVTASAKKNI 60

Query: 61  LVMGGTRFIGIFLSRLLVKEGHQV-----------------------------LHLKGDR 120
           L+MGGTRFIGIFLSRLLVKEGHQV                             LHLKGDR
Sbjct: 61  LIMGGTRFIGIFLSRLLVKEGHQVTLFTRGKAPVTQQLPGESEADYADFKSKILHLKGDR 120

Query: 121 KDFDFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHF 180
           KDFDFVKSSLSAAGFDVVYDINGREA EVEPI+DALPKLEQFIYCSSAGVYLKSDLLPHF
Sbjct: 121 KDFDFVKSSLSAAGFDVVYDINGREADEVEPIIDALPKLEQFIYCSSAGVYLKSDLLPHF 180

Query: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240
           EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP
Sbjct: 181 EVDAVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIP 240

Query: 241 IPNSGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPE 300
           IPNSGIQITQLGHVKDLA AFVQVLGN+KASQQVFNISGEKYV+FDGLAKACAKAGGFPE
Sbjct: 241 IPNSGIQITQLGHVKDLANAFVQVLGNDKASQQVFNISGEKYVSFDGLAKACAKAGGFPE 300

Query: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRG 355
           PEIVHYNPKEFDFGKKKPFPFRDQHFFAS+EKAKSVLGWKPEFDLVEGL DSYNLDFGRG
Sbjct: 301 PEIVHYNPKEFDFGKKKPFPFRDQHFFASIEKAKSVLGWKPEFDLVEGLADSYNLDFGRG 360

[Close]

BLAST of Cp4.1LG18g00150 vs. NCBI nr
Match: gi|802755325|ref|XP_012088856.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas])

HSP 1 Score: 633.3 bits (1632), Expect = 2.6e-178
Identity = 312/380 (82.11%), Postives = 328/380 (86.32%), Query Frame = 1


Query: 4   MANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVM 63
           MA  +A   Q  PSFS+LPSS SDF+G RLH+Q+Q KRKV Q KGAL VTAS +KNIL+M
Sbjct: 1   MARLVAVQQQTQPSFSLLPSSFSDFNGTRLHSQIQCKRKVWQTKGALQVTASTSKNILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQV-----------------------------LHLKGDRKDF 123
           GGTRFIG+FLSRLLVKEGHQV                             LHLKGDRKDF
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDQEYADFSSKILHLKGDRKDF 120

Query: 124 DFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVD 183
           +FVKSSLSA GFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPH E D
Sbjct: 121 EFVKSSLSAKGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHAETD 180

Query: 184 AVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 243
           AVDPKSRHKGKLETESLL SK VNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN
Sbjct: 181 AVDPKSRHKGKLETESLLESKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 244 SGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEI 303
           SG+QITQLGHVKDLA AF+QVLGNEKAS+QVFNISGEKYVTFDGLA+ACAKAGGFPEPE+
Sbjct: 241 SGVQITQLGHVKDLAKAFIQVLGNEKASKQVFNISGEKYVTFDGLARACAKAGGFPEPEL 300

Query: 304 VHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFR 355
           VHYNPKEFDFGKKK FPFRDQHFFAS+EKAK VLGWKPEFDLVEGL DSYNLDFGRGTFR
Sbjct: 301 VHYNPKEFDFGKKKAFPFRDQHFFASIEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTFR 360

[Close]

BLAST of Cp4.1LG18g00150 vs. NCBI nr
Match: gi|1009116591|ref|XP_015874856.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 632.9 bits (1631), Expect = 3.4e-178
Identity = 310/370 (83.78%), Postives = 324/370 (87.57%), Query Frame = 1


Query: 14  KSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVMGGTRFIGIFL 73
           K PSFS+LPSSLSDF+G RL  Q+QYK+KV QPKGALHVTAS+ K IL+MGGTRFIG+FL
Sbjct: 12  KHPSFSLLPSSLSDFNGIRLQTQLQYKKKVYQPKGALHVTASSKKKILIMGGTRFIGVFL 71

Query: 74  SRLLVKEGHQV-----------------------------LHLKGDRKDFDFVKSSLSAA 133
           SRLLVK+GHQV                             LHLKGDRKDFDFVKSSLSA 
Sbjct: 72  SRLLVKDGHQVTLFTRGKAPITKQLPGESDKDYTDFSSKILHLKGDRKDFDFVKSSLSAE 131

Query: 134 GFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVDAVDPKSRHKG 193
           GFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFE DAVDPKSRHKG
Sbjct: 132 GFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFETDAVDPKSRHKG 191

Query: 194 KLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGH 253
           KLETESLL S+DVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGH
Sbjct: 192 KLETESLLKSRDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGH 251

Query: 254 VKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDF 313
           VKDLA  F  VLGNEKAS+QVFNISGEKYVTFDGLA+ACAKAGGFPEPEI+HYNPKEFDF
Sbjct: 252 VKDLAKVFADVLGNEKASKQVFNISGEKYVTFDGLARACAKAGGFPEPEIIHYNPKEFDF 311

Query: 314 GKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFSTDDI 355
           GKKK FPFRDQHFFASVEKAKSVLGWKPEFDLVEGL DSYNLDFGRGT+RKEADF TDDI
Sbjct: 312 GKKKAFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLADSYNLDFGRGTYRKEADFETDDI 371

[Close]

BLAST of Cp4.1LG18g00150 vs. NCBI nr
Match: gi|698457483|ref|XP_009780849.1| (PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 626.7 bits (1615), Expect = 2.5e-176
Identity = 309/378 (81.75%), Postives = 330/378 (87.30%), Query Frame = 1


Query: 4   MANPMAAHHQKSPSFSVLPSSLSDFHGARLHAQVQYKRKVMQPKGALHVTASANKNILVM 63
           MA+ +A  H K PSF+VLPSS SDF+GA+L + +Q+KRK  QPKGALHVTAS+ K IL+M
Sbjct: 1   MASLVAVQH-KQPSFAVLPSSHSDFNGAKLISSLQFKRKPCQPKGALHVTASSAKKILIM 60

Query: 64  GGTRFIGIFLSRLLVKEGHQV-----------------------------LHLKGDRKDF 123
           GGTRFIG+FLSRLLVKEGHQV                             LHLKGDR DF
Sbjct: 61  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPISQQLPGESDQDYADFSSKLLHLKGDRMDF 120

Query: 124 DFVKSSLSAAGFDVVYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHFEVD 183
           DFVKSSLSA GFDVVYDINGREAVEVEPILDALP LEQ+IYCSSAGVYLK+D LPHFE D
Sbjct: 121 DFVKSSLSAEGFDVVYDINGREAVEVEPILDALPNLEQYIYCSSAGVYLKTDYLPHFEAD 180

Query: 184 AVDPKSRHKGKLETESLLASKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 243
           AVDPKSRHKGKLETESLL S+DVNWTS+RPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN
Sbjct: 181 AVDPKSRHKGKLETESLLESRDVNWTSVRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPN 240

Query: 244 SGIQITQLGHVKDLATAFVQVLGNEKASQQVFNISGEKYVTFDGLAKACAKAGGFPEPEI 303
           SG+QITQLGHVKDLATAF+QVLGNEKAS+QVFNISGEKYVTFDGLAKACAKAGGFPEPEI
Sbjct: 241 SGLQITQLGHVKDLATAFIQVLGNEKASKQVFNISGEKYVTFDGLAKACAKAGGFPEPEI 300

Query: 304 VHYNPKEFDFGKKKPFPFRDQHFFASVEKAKSVLGWKPEFDLVEGLTDSYNLDFGRGTFR 353
           VHYNPKEFDFGKKK FPFRDQHFFASVEKAK+VLGWKPEFDLVEGLTDSYNLDFGRGT+R
Sbjct: 301 VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKAVLGWKPEFDLVEGLTDSYNLDFGRGTYR 360

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CP41B_ARATH	9.3e-176	81.62	Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis ...	[more]
CP41A_ARATH	4.1e-46	40.98	Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis ...	[more]

BLAST of Cp4.1LG18g00150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ66_CUCSA	8.2e-195	89.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G500330 PE=4 SV=1	[more]
A0A067JHM3_JATCU	1.8e-178	82.11	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23195 PE=4 SV=1	[more]
V4KDW6_EUTSA	5.5e-175	81.67	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007937mg PE=4 SV=1	[more]
A9PJN1_9ROSI	5.5e-175	80.53	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]
E4MWA3_EUTHA	7.2e-175	81.40	mRNA, clone: RTFL01-02-I12 OS=Eutrema halophilum PE=2 SV=1	[more]

BLAST of Cp4.1LG18g00150 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09340.1	5.3e-177	81.62	chloroplast RNA binding	[more]
AT3G63140.1	2.3e-47	40.98	chloroplast stem-loop binding protein of 41 kDa	[more]

BLAST of Cp4.1LG18g00150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082960\|ref\|XP_008442117.1\|	7.3e-197	90.34	PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cuc...	[more]
gi\|449457309\|ref\|XP_004146391.1\|	1.2e-194	89.03	PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Cuc...	[more]
gi\|802755325\|ref\|XP_012088856.1\|	2.6e-178	82.11	PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jat...	[more]
gi\|1009116591\|ref\|XP_015874856.1\|	3.4e-178	83.78	PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Ziz...	[more]
gi\|698457483\|ref\|XP_009780849.1\|	2.5e-176	81.75	PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Nic...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0050662	coenzyme binding
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR016040	NAD(P)-bd_dom
IPR001509	Epimerase_deHydtase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0050662	coenzyme binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g00150.1	Cp4.1LG18g00150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001509	NAD-dependent epimerase/dehydratase, N-terminal domain	PFAM	PF01370	Epimerase	coord: 126..248 score: 1.
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 90..211 score: 3.4E-9coord: 55..89 score: 6.
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 58..325 score: 6.06
None	No IPR available	GENE3D	G3DSA:3.90.25.10		coord: 212..323 score: 4.4
None	No IPR available	PANTHER	PTHR10366	NAD DEPENDENT EPIMERASE/DEHYDRATASE	coord: 59..350 score: 3.2E
None	No IPR available	PANTHER	PTHR10366:SF289	CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA B, CHLOROPLASTIC	coord: 59..350 score: 3.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g00150	CmaCh10G011700	Cucurbita maxima (Rimu)	cmacpeB081
Cp4.1LG18g00150	CmoCh10G012490	Cucurbita moschata (Rifu)	cmocpeB056
Cp4.1LG18g00150	Cla010956	Watermelon (97103) v1	cpewmB364
Cp4.1LG18g00150	ClCG01G010830	Watermelon (Charleston Gray)	cpewcgB317
Cp4.1LG18g00150	Lsi02G011420	Bottle gourd (USVL1VR-Ls)	cpelsiB290
Cp4.1LG18g00150	Carg27418	Silver-seed gourd	carcpeB1046

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g00150	Cucumber (Gy14) v1	cgycpeB0050
Cp4.1LG18g00150	Cucumber (Gy14) v1	cgycpeB0051
Cp4.1LG18g00150	Wild cucumber (PI 183967)	cpecpiB354
Cp4.1LG18g00150	Wild cucumber (PI 183967)	cpecpiB367
Cp4.1LG18g00150	Cucumber (Chinese Long) v2	cpecuB353
Cp4.1LG18g00150	Cucumber (Chinese Long) v2	cpecuB367
Cp4.1LG18g00150	Bottle gourd (USVL1VR-Ls)	cpelsiB302
Cp4.1LG18g00150	Watermelon (Charleston Gray)	cpewcgB328
Cp4.1LG18g00150	Watermelon (97103) v1	cpewmB357
Cp4.1LG18g00150	Melon (DHL92) v3.5.1	cpemeB331
Cp4.1LG18g00150	Cucumber (Gy14) v2	cgybcpeB043
Cp4.1LG18g00150	Cucumber (Gy14) v2	cgybcpeB058
Cp4.1LG18g00150	Melon (DHL92) v3.6.1	cpemedB389
Cp4.1LG18g00150	Cucumber (Chinese Long) v3	cpecucB0432
Cp4.1LG18g00150	Cucumber (Chinese Long) v3	cpecucB0446
Cp4.1LG18g00150	Wax gourd	cpewgoB0470