Carg27268 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27268
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Hydroxyproline-rich glycoprotein family protein
Location	Cucurbita_argyrosperma_scaffold_190 : 12638 .. 13060 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCACACCTAAACAAGGTTCTCTCCACAATCCTCCTGCCCTTGATCGTTTCCGTCCTTCCGCCGGCGACTAGCTCCGACGACACCTGCCCATATCCCTGCTACCCTCCGCCAACCGACACCGGCTATCCCGCCACTCCTGCCACCCTAACTCCGCCGTCGCAAACAGACTCAGGCTCCTACTCTCCTCCAGCGTACTACTCCCCGCCGGCTGCATATTACCCATATAACCCGCCGCCGTACGATGGCGACAGCTTCGACGGCATCACTCCACCGCCACCGGATCCGATTCTGCCGTACTTCCCTTACTATTACAAGAAGCCTCCTCACAAACCGGAGGATGAATCCGGTGGTACCGCCGTGTCGGAGATCGGAGCTTTTGTATTTATTTGTGTCTCCGTCTTATTGAATTTGATGTAA

mRNA sequence

ATGGGTTCACACCTAAACAAGGTTCTCTCCACAATCCTCCTGCCCTTGATCGTTTCCGTCCTTCCGCCGGCGACTAGCTCCGACGACACCTGCCCATATCCCTGCTACCCTCCGCCAACCGACACCGGCTATCCCGCCACTCCTGCCACCCTAACTCCGCCGTCGCAAACAGACTCAGGCTCCTACTCTCCTCCAGCGTACTACTCCCCGCCGGCTGCATATTACCCATATAACCCGCCGCCGTACGATGGCGACAGCTTCGACGGCATCACTCCACCGCCACCGGATCCGATTCTGCCGTACTTCCCTTACTATTACAAGAAGCCTCCTCACAAACCGGAGGATGAATCCGGTGGTACCGCCGTGTCGGAGATCGGAGCTTTTGTATTTATTTGTGTCTCCGTCTTATTGAATTTGATGTAA

Coding sequence (CDS)

ATGGGTTCACACCTAAACAAGGTTCTCTCCACAATCCTCCTGCCCTTGATCGTTTCCGTCCTTCCGCCGGCGACTAGCTCCGACGACACCTGCCCATATCCCTGCTACCCTCCGCCAACCGACACCGGCTATCCCGCCACTCCTGCCACCCTAACTCCGCCGTCGCAAACAGACTCAGGCTCCTACTCTCCTCCAGCGTACTACTCCCCGCCGGCTGCATATTACCCATATAACCCGCCGCCGTACGATGGCGACAGCTTCGACGGCATCACTCCACCGCCACCGGATCCGATTCTGCCGTACTTCCCTTACTATTACAAGAAGCCTCCTCACAAACCGGAGGATGAATCCGGTGGTACCGCCGTGTCGGAGATCGGAGCTTTTGTATTTATTTGTGTCTCCGTCTTATTGAATTTGATGTAA

Protein sequence

MGSHLNKVLSTILLPLIVSVLPPATSSDDTCPYPCYPPPTDTGYPATPATLTPPSQTDSGSYSPPAYYSPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDESGGTAVSEIGAFVFICVSVLLNLM

Homology

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BLAST of Carg27268 vs. NCBI nr
Match: XP_023520931.1 (extensin-1-like [Cucurbita pepo subsp. pepo] >XP_023523091.1 extensin-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 3.0e-41
Identity = 134/140 (95.71%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MGSHLNKVLSTILLPLIVSVLPPATSSDDTCPYPCYPPPTDTGYPATPATLTPPSQTXXX 60
           MGSHLNKVLSTILL LI+SVLPPATSSDDTCPYPCYPPPT TGYPATPATLTPPSQT   
Sbjct: 1   MGSHLNKVLSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSG 60

Query: 61  XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXXDESGGT 120
           XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXXDESGGT
Sbjct: 61  XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXXDESGGT 120

Query: 121 AVSEIGAFVFICVSVLLNLM 141
           AVSEIGAFVFICVSVLLNLM
Sbjct: 121 AVSEIGAFVFICVSVLLNLM 140

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BLAST of Carg27268 vs. NCBI nr
Match: XP_022989991.1 (extensin-2-like [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 5.9e-37
Identity = 129/140 (92.14%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MGSHLNKVLSTILLPLIVSVLPPATSSDDTCPYPCYPPPTDTGYPATPATLTPPSQTXXX 60
           MGSHLNKVLS ILL LIVSVLPPAT SDDTCPYPCYPPPT TGYPATPAT TPPSQT  X
Sbjct: 1   MGSHLNKVLSPILLALIVSVLPPATVSDDTCPYPCYPPPTGTGYPATPATRTPPSQTDSX 60

Query: 61  XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXXDESGGT 120
           XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXX ESGGT
Sbjct: 61  XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXXXESGGT 120

Query: 121 AVSEIGAFVFICVSVLLNLM 141
           AVSEIGA VFICVSV LN M
Sbjct: 121 AVSEIGAVVFICVSVFLNFM 140

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BLAST of Carg27268 vs. NCBI nr
Match: XP_023521361.1 (extensin-1-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 5.5e-35
Identity = 122/128 (95.31%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MGSHLNKVLSTILLPLIVSVLPPATSSDDTCPYPCYPPPTDTGYPATPATLTPPSQTXXX 60
           MGSHLNKVLSTILL LI+SVLPPATSSDDTCPYPCYPPPT TGYPATPATLTPPSQT   
Sbjct: 1   MGSHLNKVLSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSG 60

Query: 61  XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXXDESGGT 120
           XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXXDESGGT
Sbjct: 61  XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXXDESGGT 120

Query: 121 AVSEIGAF 129
           AVSEIGAF
Sbjct: 121 AVSEIGAF 128

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BLAST of Carg27268 vs. NCBI nr
Match: XP_022961992.1 (leucine-rich repeat extensin-like protein 1 [Cucurbita moschata])

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 123/140 (87.86%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MGSHLNKVLSTILLPLIVSVLPPATSSDDTCPYPCYPPPTDTGYPATPATLTPPSQTXXX 60
           MGSHLNKVLSTILL LIVSVLPPATSSDDTCPYPCYPPPT T Y             XXX
Sbjct: 1   MGSHLNKVLSTILLALIVSVLPPATSSDDTCPYPCYPPPTGTSYXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXXDESGGT 120
           XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXX DESGGT
Sbjct: 61  XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITPXXXXXXXXXXXXXXXXXXXXXEDESGGT 120

Query: 121 AVSEIGAFVFICVSVLLNLM 141
           AVSEIGAFVFICVSVLLNLM
Sbjct: 121 AVSEIGAFVFICVSVLLNLM 140

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BLAST of Carg27268 vs. NCBI nr
Match: PON98173.1 (hydroxyproline-rich glycoprotein family protein [Trema orientalis])

HSP 1 Score: 57.4 bits (137), Expect = 4.6e-05
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 6  NKVLSTILLPLIVSVLPPATSSDDTCPYPCYPPPTDTGYPATPATLTPPS 56
          +++LST+ L  IV   P AT SDD C YPCYPPPT T  P TP+T+ PPS
Sbjct: 7  SRLLSTLFLATIVLNFPRATLSDDPCQYPCYPPPTGTVTPTTPSTIPPPS 56

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BLAST of Carg27268 vs. TrEMBL
Match: tr|A0A2P5FK70|A0A2P5FK70_9ROSA (Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=TorRG33x02_060030 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.0e-05
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 6  NKVLSTILLPLIVSVLPPATSSDDTCPYPCYPPPTDTGYPATPATLTPPS 56
          +++LST+ L  IV   P AT SDD C YPCYPPPT T  P TP+T+ PPS
Sbjct: 7  SRLLSTLFLATIVLNFPRATLSDDPCQYPCYPPPTGTVTPTTPSTIPPPS 56

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BLAST of Carg27268 vs. TrEMBL
Match: tr|B9HJA6|B9HJA6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G129200v3 PE=4 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 32/92 (34.78%), Postives = 42/92 (45.65%), Query Frame = 0


Query: 1  MGSHLNKVLSTILLPLIVSVLPPATSSDDTCPYPCYPPPTDTGYPATPATLTPPSQTXXX 60
          M  +L   LS +    ++S LP   +SDD CPYPCYPPPT TG   T  T  P   +   
Sbjct: 1  MDINLTLTLSILFFTSVLSNLPSLATSDDVCPYPCYPPPTGTGRTPTVLTTPPSPPSQSA 60

Query: 61 XXXXXXXXXXXXXXXXYNPPPYDGDSFDGITP 93
                          + PPP  G++ DG+ P
Sbjct: 61 GSYSPPGYPSPTGNLPFYPPPPFGNNLDGLPP 92

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BLAST of Carg27268 vs. TrEMBL
Match: tr|A0A1S3CU56|A0A1S3CU56_CUCME (proline-rich receptor-like protein kinase PERK8 OS=Cucumis melo OX=3656 GN=LOC103504577 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 9  LSTILLPLIVSVLPPATSSDDTCPYPCYPPPT 41
          +  +LL L++++LPPAT SDDTCPYPCYPPPT
Sbjct: 5  IPAVLLALVIALLPPATRSDDTCPYPCYPPPT 36

The following BLAST results are available for this feature:

BLAST of Carg27268 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520931.1	3.0e-41	95.71	extensin-1-like [Cucurbita pepo subsp. pepo] >XP_023523091.1 extensin-1-like [Cu...	[more]
XP_022989991.1	5.9e-37	92.14	extensin-2-like [Cucurbita maxima]	[more]
XP_023521361.1	5.5e-35	95.31	extensin-1-like, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022961992.1	2.2e-31	87.86	leucine-rich repeat extensin-like protein 1 [Cucurbita moschata]	[more]
PON98173.1	4.6e-05	58.00	hydroxyproline-rich glycoprotein family protein [Trema orientalis]	[more]

BLAST of Carg27268 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg27268 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27268 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5FK70\|A0A2P5FK70_9ROSA	3.0e-05	58.00	Hydroxyproline-rich glycoprotein family protein OS=Trema orientalis OX=63057 GN=...	[more]
tr\|B9HJA6\|B9HJA6_POPTR	1.5e-04	34.78	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G129200v3 PE=...	[more]
tr\|A0A1S3CU56\|A0A1S3CU56_CUCME	4.4e-04	68.75	proline-rich receptor-like protein kinase PERK8 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27268-RA	Carg27268-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..62
None	No IPR available	PANTHER	PTHR37702	FAMILY NOT NAMED	coord: 4..123

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27268	Cla003910	Watermelon (97103) v1	carwmB0318
Carg27268	Csa5G576580	Cucumber (Chinese Long) v2	carcuB0357
Carg27268	MELO3C005324	Melon (DHL92) v3.5.1	carmeB0334
Carg27268	ClCG01G006070	Watermelon (Charleston Gray)	carwcgB0320
Carg27268	CSPI05G19780	Wild cucumber (PI 183967)	carcpiB0361
Carg27268	Cucsa.280540	Cucumber (Gy14) v1	carcgyB0386
Carg27268	CmaCh15G009430	Cucurbita maxima (Rimu)	carcmaB0460
Carg27268	CmaCh04G020910	Cucurbita maxima (Rimu)	carcmaB0461
Carg27268	CmoCh04G021930	Cucurbita moschata (Rifu)	carcmoB0452
Carg27268	Lsi09G006420	Bottle gourd (USVL1VR-Ls)	carlsiB301
Carg27268	Cp4.1LG13g03700	Cucurbita pepo (Zucchini)	carcpeB0458
Carg27268	CsGy5G019270	Cucumber (Gy14) v2	carcgybB0340
Carg27268	MELO3C005324.2	Melon (DHL92) v3.6.1	carmedB0342
Carg27268	CsaV3_5G028610	Cucumber (Chinese Long) v3	carcucB0361

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27268	Cucurbita moschata (Rifu)	carcmoB0451