Carg27187 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg27187
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Exu regulon transcriptional regulator
Location	Cucurbita_argyrosperma_scaffold_486 : 24799 .. 26215 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTATATGCTTTAATGGAGCAAGTTTGTGTTTGTGAAGGTGTTCGCTTGGGGAATGGGCTGATGAAGCCACTGCTGCTAGGAACACCACTTGTGAGTTTTCCCTTTAAAGCTTTCTCTTCCAAAATCTCTTATCTTGATGGCTAATATATATTAACTATAGGAAGAGGAGGTTCCATTGGTGGAAGAAAATGGGCATTGGAATTCAGGTTGGGCTTAAGTTTTGTGCATTAAATTTTGCCCAAACGGGACATATTCCACTCTTTATTATGCATCACATCGCATATCTAAAGTGGGTTTGACATTTATGATGCAGGGAAAAGTAGAAAACTTCTGATGGAAACTTCACCATCATCTCCAACCCCTTCCACAACAAGGGTTAGTCTTAGTCTTAGTCATCTCGGATTTTAAAACCTAACAAATTTATGTAAAGTTCATACAAGAACAGCAATTGATTAAGTTGGAAATGACCCACGATCGAAATATGTCGAAACGAAGTAAAAGGAACAACTTGAGAGGAGAGAGCTTTTAAAACGAAGAAATCTTAAACACTTAGCTTTTCAATTCTTTTCATTATTTCGACATATTTCGATCGTGGGTCATTCCAACATTTGGTATCAGAGTCATGCCCGTAAATTAGCAATGTGAATAGAATTTTCAAGTGTCGAACAAAGGGTGAGGACTCCAGAAAAGGAGTCGAGCCTCGGGGAAGTTGTTCGAGGGCTCCATAGGCCTAAGAGGAAGCTCTATAGTATACTTTGTTCGATGGGGATTGTTGGGAGGGAGTCACACGTTGGTTAATAAGTAAAAAATACTTTTCAAGCAAAGTCACGAGAGCTCATACTCAAAGTGGACAATATCACTAACAGGGTTGTGTGTGGTTTGATGTTTAGAATAAAGAAGGAAACAAAAAGGGGAACCAGGGCATGAAAGAACAGGACATGAAGAGTTCAAAGGCAGTTTCTGAGAATCTTGAGGCAGGGCATGAACAACAACAACATTATCCAGACCTCATAGAGATAGCAGAAATGGACTATTCTCCAGCAACAAGAAAGCCTCCAATACATAACTGATCCCAAAAGAAACAGACAAACAACACAACCGAACAAGACAAAAAGGGTTGTAGGGTAAAAGAAATTCAACAAAAAAGAGAAGAGTATAAAAGACAGCGTTACAGAAATGCTGCAGCTTTTTTAGGGCTTAGGGAACTGTCCTTTGTACATACCATTACTAAAAGCCTATATGTTATCAACATTAATATTATTATTACTACTTGTACCCCTAATTAATTAATTCTTCATAATGTTTTGCATGGATAAAGGCAACGACCAGACATTATAATATATTAATCCCACCAACTTGGGTGTCTTTTGTTTTTTACTTTTACTTTGAGAAAAGGAACAGAAAGGAACTG

mRNA sequence

ATGCTCTTATATGCTTTAATGGAGCAAGTTTGTGTTTGTGAAGGTGTTCGCTTGGGGAATGGGCTGATGAAGCCACTGCTGCTAGGAACACCACTTGAAGAGGAGGTTCCATTGGTGGAAGAAAATGGGCATTGGAATTCAGGGAAAAGTAGAAAACTTCTGATGGAAACTTCACCATCATCTCCAACCCCTTCCACAACAAGGAATAAAGAAGGAAACAAAAAGGGGAACCAGGGCATGAAAGAACAGGACATGAAGAGTTCAAAGGCAGTTTCTGAGAATCTTGAGGCAGGGCATGAACAACAACAACATTATCCAGACCTCATAGAGATAGCAGAAATGGACTATTCTCCAGCAACAAGAAAGCCTCCAATACATAACTGATCCCAAAAGAAACAGACAAACAACACAACCGAACAAGACAAAAAGGGTTGTAGGGTAAAAGAAATTCAACAAAAAAGAGAAGAGTATAAAAGACAGCGTTACAGAAATGCTGCAGCTTTTTTAGGGCTTAGGGAACTGTCCTTTGTACATACCATTACTAAAAGCCTATATGTTATCAACATTAATATTATTATTACTACTTGTACCCCTAATTAATTAATTCTTCATAATGTTTTGCATGGATAAAGGCAACGACCAGACATTATAATATATTAATCCCACCAACTTGGGTGTCTTTTGTTTTTTACTTTTACTTTGAGAAAAGGAACAGAAAGGAACTG

Coding sequence (CDS)

ATGCTCTTATATGCTTTAATGGAGCAAGTTTGTGTTTGTGAAGGTGTTCGCTTGGGGAATGGGCTGATGAAGCCACTGCTGCTAGGAACACCACTTGAAGAGGAGGTTCCATTGGTGGAAGAAAATGGGCATTGGAATTCAGGGAAAAGTAGAAAACTTCTGATGGAAACTTCACCATCATCTCCAACCCCTTCCACAACAAGGAATAAAGAAGGAAACAAAAAGGGGAACCAGGGCATGAAAGAACAGGACATGAAGAGTTCAAAGGCAGTTTCTGAGAATCTTGAGGCAGGGCATGAACAACAACAACATTATCCAGACCTCATAGAGATAGCAGAAATGGACTATTCTCCAGCAACAAGAAAGCCTCCAATACATAACTGA

Protein sequence

MLLYALMEQVCVCEGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN

Homology

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: XP_022933409.1 (uncharacterized protein LOC111440836 [Cucurbita moschata])

HSP 1 Score: 228.4 bits (581), Expect = 1.4e-56
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73
           +GVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN
Sbjct: 21  QGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 80

Query: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 81  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 134

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: XP_023001652.1 (uncharacterized protein LOC111495723 [Cucurbita maxima])

HSP 1 Score: 221.1 bits (562), Expect = 2.2e-54
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73
           +GVRLGNGLMKPLLLGTPLEEEVPLVEENGH NSGKSRKLLMETSPSSPTPSTTRNKEGN
Sbjct: 21  QGVRLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKLLMETSPSSPTPSTTRNKEGN 80

Query: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           KKGN GMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 81  KKGNPGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 134

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: XP_023531425.1 (uncharacterized protein LOC111793666 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPTPSTTRNKEGN 73
           +GV LGNGLMKPLLLGTPLEEEVPLVEENGH NSGKSRKLLMETSPSSPTPSTTRNKEGN
Sbjct: 21  QGVPLGNGLMKPLLLGTPLEEEVPLVEENGHCNSGKSRKLLMETSPSSPTPSTTRNKEGN 80

Query: 74  KKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           KKGN GMKEQDMK SKAVSENLEAGHE+QQHYPDLIEIAEMDYSPATRKPPIHN
Sbjct: 81  KKGNPGMKEQDMKRSKAVSENLEAGHEEQQHYPDLIEIAEMDYSPATRKPPIHN 134

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: XP_022135297.1 (uncharacterized protein LOC111007293 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 4.9e-22
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 14  EGVRLGNGLMKPL-LLGTPLEEEVPLVEE----------NGHWNSGKSRKLLMETSPSSP 73
           +G+RLGNG++KP+  L   L EE PL+EE           G  NSG  RKLL  TSPSS 
Sbjct: 61  DGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSPSSS 120

Query: 74  TPSTTRNKEGN---KKGNQGMKEQDMK--------SSKAVSENLEAGHEQQQHYPDLIEI 128
           TPS TRN E     K+G+   K++++         +S+AVSENLEAG   Q+HYPDL++I
Sbjct: 121 TPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAG---QEHYPDLVDI 180

[Close]

BLAST of Carg27187 vs. NCBI nr
Match: XP_022135362.1 (uncharacterized protein LOC111007333 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 4.9e-22
Identity = 71/136 (52.21%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 14  EGVRLGNGLMKPL-LLGTPLEEEVPLVEE----------NGHWNSGKSRKLLMETSPSSP 73
           +G+RLGNG++KP+  L   L EE PL+EE           G  NSG  RKLL  TSPSS 
Sbjct: 22  QGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSPSSS 81

Query: 74  TPSTTRNKEGN---KKGNQGMKEQDMK--------SSKAVSENLEAGHEQQQHYPDLIEI 128
           TPS TRN E     K+G+   K++++         +S+AVSENLEAG   Q+HYPDL++I
Sbjct: 82  TPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAG---QEHYPDLVDI 141

[Close]

BLAST of Carg27187 vs. TrEMBL
Match: tr|A0A0A0LYZ1|A0A0A0LYZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264570 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15
Identity = 67/135 (49.63%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLL--LGTPLEEEVPLVE----ENGHWNSGKSRKLLMETS---PSSPTP 73
           +G+RLGNG++  L+  L   LEE   L E    ENGH NSG +RKL+  T+   PSSPTP
Sbjct: 27  QGIRLGNGIIIKLVGQLEKTLEEVEGLKETTICENGHCNSGNNRKLMTVTAPPIPSSPTP 86

Query: 74  STTRNKEGN-KKG-----------NQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIA 128
           S  RN EGN KKG           +   K+ ++++S+AVS+NLEA         DLI+IA
Sbjct: 87  S-IRNNEGNYKKGISPKSSNKEESSSVKKKDNLENSEAVSKNLEAA-------LDLIDIA 146

[Close]

BLAST of Carg27187 vs. TrEMBL
Match: tr|A0A1U7YW88|A0A1U7YW88_NELNU (uncharacterized protein LOC104588495 OS=Nelumbo nucifera OX=4432 GN=LOC104588495 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.4e-06
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 0


Query: 1   MLLYALMEQVCVCEGVRLGNGLMKPLLLGTPLEEEVPLVEEN------------GHWNSG 60
           +L+  L+  +   +G+RL  GL K  L     E+E  ++E N            GH +SG
Sbjct: 8   LLISLLLVLLVGTQGIRLEQGL-KSSLHQKSEEKENSMIEANAGVLGEVVPCRDGHCSSG 67

Query: 61  KSRKLLMET------------SPSSPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLE 120
           +SR L+  T                    T++ ++G++      +   ++SS  VSE  E
Sbjct: 68  RSRNLMTNTIXXXXXXXXXXXXXXXXXXPTSKRQKGDQGFGGNEENFSVESSPPVSERRE 127

Query: 121 AGHEQQQHYPDLIEIAEMDYSPATRKPPIHN 128
           A     +HYPD+I+IA MDYSP  RKPPIHN
Sbjct: 128 A---SPKHYPDIIDIAGMDYSPIRRKPPIHN 154

[Close]

BLAST of Carg27187 vs. TrEMBL
Match: tr|A0A2R6QHR6|A0A2R6QHR6_ACTCH (Auxin-induced protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18544 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-04
Identity = 45/129 (34.88%), Postives = 61/129 (47.29%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVEENGHWNSGKSRKLLMETSPSSPT---------- 73
           +G+RL  G    +      EE +   E  G  +    RKL+ + + + PT          
Sbjct: 20  QGIRLKKGFFANIGYHKIHEEAIQCKE--GQCSGNNIRKLVEKATSTIPTTTTIISKNEK 79

Query: 74  ---PSTTRNKEG--NKKGNQGMKEQDMKSSKAVSENLEAGHEQQQHYPDLIEIAEMDYSP 128
              P    N EG  N K   G +E    SS  VSE+ EA     Q YPD++++A MDY+P
Sbjct: 80  NGGPKVWSNPEGKLNTKRQSGKEESLTVSSPPVSEHREA---INQRYPDILDLAGMDYTP 139

[Close]

BLAST of Carg27187 vs. TrEMBL
Match: tr|A0A164YHQ1|A0A164YHQ1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017766 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 49  KSRKLLMETSPSSPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQQQ----- 108
           KSRKLL ET+ SS T S ++N +  +    GMK     ++ A ++ +E GH +Q+     
Sbjct: 14  KSRKLLTETANSSST-SASKNHQEIEGNLNGMKVNGEMNTSATTKQIE-GHGKQENFSVK 73

Query: 109 -----------HYPDLIEIAEMDYSPATRKPPIHN 128
                      HYPD+++IA MDYSPA RK PIHN
Sbjct: 74  SSPVQVEAAPKHYPDVLDIAGMDYSPARRKSPIHN 106

[Close]

BLAST of Carg27187 vs. TrEMBL
Match: tr|A0A1U7YWK5|A0A1U7YWK5_NELNU (uncharacterized protein LOC104588576 OS=Nelumbo nucifera OX=4432 GN=LOC104588576 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-04
Identity = 48/141 (34.04%), Postives = 67/141 (47.52%), Query Frame = 0


Query: 14  EGVRLGNGLMKPLLLGTPLEEEVPLVE------------ENGHWNSGKSRKLL------- 73
           +G+RL  GL   +   +  E E  L+E             +GH  SG+SRKL+       
Sbjct: 18  QGIRLEQGLKSVIQKKSQEEMESRLIEASSGGLGEVVLCRDGHC-SGRSRKLMTXXXXXX 77

Query: 74  -------METSPSSPTPSTTRNKEGNKKGNQGMKEQ-DMKSSKAVSENLEAGHEQQQHYP 128
                       +  T    ++K  + KG  G +E   +KSS   +E+   G    +HYP
Sbjct: 78  XXXXXXXXXXKKNGGTEIDPKSKNHSNKGFGGNEENFSVKSSPLPAEH---GGATPEHYP 137

The following BLAST results are available for this feature:

BLAST of Carg27187 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933409.1	1.4e-56	99.12	uncharacterized protein LOC111440836 [Cucurbita moschata]	[more]
XP_023001652.1	2.2e-54	97.37	uncharacterized protein LOC111495723 [Cucurbita maxima]	[more]
XP_023531425.1	1.2e-52	94.74	uncharacterized protein LOC111793666 [Cucurbita pepo subsp. pepo]	[more]
XP_022135297.1	4.9e-22	52.21	uncharacterized protein LOC111007293 [Momordica charantia]	[more]
XP_022135362.1	4.9e-22	52.21	uncharacterized protein LOC111007333 [Momordica charantia]	[more]

BLAST of Carg27187 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg27187 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg27187 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYZ1\|A0A0A0LYZ1_CUCSA	2.9e-15	49.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264570 PE=4 SV=1	[more]
tr\|A0A1U7YW88\|A0A1U7YW88_NELNU	9.4e-06	32.45	uncharacterized protein LOC104588495 OS=Nelumbo nucifera OX=4432 GN=LOC104588495...	[more]
tr\|A0A2R6QHR6\|A0A2R6QHR6_ACTCH	1.0e-04	34.88	Auxin-induced protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=C...	[more]
tr\|A0A164YHQ1\|A0A164YHQ1_DAUCA	1.4e-04	41.05	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017766 ...	[more]
tr\|A0A1U7YWK5\|A0A1U7YWK5_NELNU	2.3e-04	34.04	uncharacterized protein LOC104588576 OS=Nelumbo nucifera OX=4432 GN=LOC104588576...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008083	growth factor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR039337	RGF9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0040007	growth
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008083	growth factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27187-RA	Carg27187-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..127
None	No IPR available	PANTHER	PTHR33743:SF5	SUBFAMILY NOT NAMED	coord: 39..127
IPR039337	Root meristem growth factor 9	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 39..127

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg27187	Csa1G264570	Cucumber (Chinese Long) v2	carcuB0602
Carg27187	ClCG06G011960	Watermelon (Charleston Gray)	carwcgB0560
Carg27187	CSPI01G17190	Wild cucumber (PI 183967)	carcpiB0608
Carg27187	CmaCh11G005020	Cucurbita maxima (Rimu)	carcmaB0804
Carg27187	CmoCh11G004960	Cucurbita moschata (Rifu)	carcmoB0781
Carg27187	Lsi06G010620	Bottle gourd (USVL1VR-Ls)	carlsiB521
Carg27187	Cp4.1LG04g09050	Cucurbita pepo (Zucchini)	carcpeB0819
Carg27187	CsGy1G017400	Cucumber (Gy14) v2	carcgybB0576
Carg27187	CsaV3_1G028420	Cucumber (Chinese Long) v3	carcucB0609
Carg27187	Cla97C06G121130	Watermelon (97103) v2	carwmbB0600

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg27187	Silver-seed gourd	carcarB153
Carg27187	Cucumber (Gy14) v1	carcgyB0649
Carg27187	Cucurbita maxima (Rimu)	carcmaB0803
Carg27187	Cucurbita moschata (Rifu)	carcmoB0780
Carg27187	Cucurbita pepo (Zucchini)	carcpeB0818
Carg27187	Melon (DHL92) v3.5.1	carmeB0578
Carg27187	Melon (DHL92) v3.6.1	carmedB0585
Carg27187	Watermelon (97103) v1	carwmB0572