Carg26738 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26738
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Fiber protein fb11
Location	Cucurbita_argyrosperma_scaffold_197 : 174128 .. 177430 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGATCAAAATCAGTTTGGTTCTATCGTTCTCTGGTCCGGTCCATCCAAAAACCGCAAATCTTTTCAGTCGTAAACTTTGGACTTCGAAGAATCAAGCCACGAACGTTCAGTTCAGGAAGCGAATCAGACGAAACCTTCAAGAAAATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTACTTGCTCTTTCCTCTTTAGAGCCCTAATTATCGTTCAATTTTTCATTTCTTTTGATCGATGGCATGAATCCATATGTTTTCTTTCAATTGTCGCTCATATCTATCTATTGGGAAGATCATATTTAAATGTTTTCTTTTCGGGTATTCTATATAGTTTCGGATGCGAAAAAACAATGTCGATTGAAAGCTCCTTTGTCTGACTAAATAGATTTTCGTATTTCAACCTTGTGTGTAGGATTCAGCTTTGCCTATATATATTCTGTTTCGGTGTTTCTAGTGACCGTAAATTTGTTAAGATGTTGGGATTTGTTCGTTTAAATGCTTATTAATGTTCGAGATGGGAGTTTTGGACCTTTGAGCCGGCTACCGAAGTGAGCTGCTAGCCCAAGACATACACACCTTTTCAATAGAAATGTACACGCAAGCCAAGATGGCTGAACTATCCCGAGACATAGGATGATATCATGATGCATAGGTTGCATTGTTGGGAACCAAGATGATCACTGAGATGCGATCTTGCACTTGAGAGACCTTGGCGTAGAATAGAGGCAAGGTCAAGCCAAATGACTAGGCCTAGTGTAGAGACAAGTTGACTAGGAGTCTGTGTGGTTGAACAAGCTTAGATGCCGCACGAGTTGTGTTCGGTTGATGAAGGAGAACCTCACCTAAGGTCCGATAAAGCCACGAAAACGGGTAAAAATATGAATGAGGCTTGAGCTCCCCTTAAGACTTGTCATGAGAGTGTCAAGATCATAACACTGCACAGTTGAAAATGTACAACCGATAGTCGAACTATGGTTCATATACTAAGAGTATAAGAATGAAATAGAGAAATTAAGGATTTACCATTAAAGACGAACTATGGTTCATATACTAAGAATCTACAAAATCTTACAGATAAAATTCAAATTACGTAACGAATATCCTAAGAATTGGGACATGTCTTCACTAAATAGGTTCTCATATCTATGTTGGCCATAACTAGTCATATGTGCTTCCTCTGCCTAATTTAACTGTAGTTATAAAAGAAAATGTTGCCCATCACTCAACAATATTAGATGCTCCACCTAGCTTTAGCATCAAGTGTGAACTATCTGGAACTTTTAAACAACACTGAAATGAGGGTTTGAAATAATTGCTAATATAGGTGGCAATGCAAGGGATAAGATTTTATGGAGTTTAGACTCTTGAGGTCTTTCTTCAGTTAAAACTGCTTGTATATTGGGTAATCAATTTCATAATAATTCTGAGGCTTCTTGCTCAGCTTATCAAATGTTGGAAAATTGTGGGGAAAAAGGGTGCTTGCTAAGTTGAAAACATTCTAATGGAAAGTTTACAATGTTATTATTCTATTCCTAGCAGTTTCAATTTGAGAAAGAAGGTTTTATGAGTTCATCCTTCACAGAGAAACTATGTCCTGTTCCATTTGGAGATGTTTTGCAAGATAGATTGCGGGAAATTTGTTCTCAGAATTGGATTTAAGTTCCACCGATAATTTAGCATCACTGAGAACTGGGCATCTTCAGCCAATTAGCCCTGTGCTCCCCAACACTCCTAGGATTAGCAACCTACCAGAGTTTGGAGCCACTTACCTGCATATGTTTATACCAACTAGTCACAGGTTGTTAAATGAAACACAATAGCAAATTGATAGGACCCCACTGGCCAGAAAATAACAAATAGAACTATAAAGCAATATGAAATTGATAATCGTGGACATGCATTTGATGAATCTCTGCAACCTTGACCTAAAGTTTCAAAGGTTTCTTTCTTCAACAAATAAGTATCCTTAGCTTTGTTCATCCTTCTTAAAAAGGTACTACATTTGGACTTTTTGTGTTTCTTACCACAATAACCAAAAACTGAACTAAAAGAAAAATGACTTATTTCTTCCCTACAACCAATAAACTCCATTGATTAATATCCATTTTCAACATCTTGATGAAGCAAGAGAGAATGAGAGGTGGAATTACCGCCTTACCTTCTTCATTTTTCATGATAAACTGATAAGTGAGATCAAGTCCAATTTTTACGCGCTTTTTCGGTTTGATTGGCTACCACATGGAACATATGTGTACATTTTGGTTTCTTACATATTACAAACCTTGTAGGTCTTTTCCTTCCTGCCGTCGTAAGACCAATTCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTAAGTACGGAATCTTGACAAGTTTTAGACATTCATTCTTTTCTGATGTGTGGTTTGGTTGGATCATTTGGGCCAAATGTAAACGTGAGTTTCTTTGCTTATGTCTTGAAGTTTATGTTTCTTTGGTACTTATTATCATTCTCAGCCTCTGGTAAGTGAGATTCCTTGCCACTTTCCAAAAACATATGCCAGCCAGTATCTAAGTGGGGAACAATCAATAAATCTACCCTAAAAAAACCAACAATTTCTTGTTTTTCCCTTTCTTTGATAGGAGGAAATTTTTTTACTTTTCTTACAATGTTCATTGTAAATTTCTGTATTGTCAAATTTGTAGGTGGTTGCGAGTATGACTGGAAAGAAATGAGGATGATTGGTATCGGTGACATAAGAAGGTTGTTCTTGATGGATCAATGATCATTCTCTTCTGCCATAAAATAAGTCTGTACAATCTTTTTAAACGTCATGGTTGATAGCAATAGTTATTGCTACACATTCACTTGTTTTATGCCCAATGCATAAGACTGATTTTCAAGATATTTCAGCTTTGAGCACTCCGTTTGAAGCCCTGTCAAAACTTGGTTTCACCATAAATTGAGTTCTAAAAACTCGGTTTGATTTTCTTTTCTTGTTTGTTTCAAATGTGGGATCGAACCGTTGACTTTTGGGATGGTAAGTTGATAATTGGCAAAAAGTCAAATTGAGCGTACCTCATTATATACATTATGAAAGAACTAAAACACGAATCACTTCATCCTTGTTTCTAATGTTCTTTCATTTTGGTTGTTTTTGTTTGAATTAATTATTTTATTCACATAGTTTTTTGGGTTCATTTATGAAGGTTGAAGGTTTAAGTTGCATTACGAATCATTATGATATGTAG

mRNA sequence

TAAAGATCAAAATCAGTTTGGTTCTATCGTTCTCTGGTCCGGTCCATCCAAAAACCGCAAATCTTTTCAGTCGTAAACTTTGGACTTCGAAGAATCAAGCCACGAACGTTCAGTTCAGGAAGCGAATCAGACGAAACCTTCAAGAAAATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTCTTTTCCTTCCTGCCGTCGTAAGACCAATTCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTTGAAGGTTTAAGTTGCATTACGAATCATTATGATATGTAG

Coding sequence (CDS)

ATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTCTTTTCCTTCCTGCCGTCGTAAGACCAATTCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTTGAAGGTTTAAGTTGCATTACGAATCATTATGATATGTAG

Protein sequence

MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVEGLSCITNHYDM

Homology

[Close]

BLAST of Carg26738 vs. NCBI nr
Match: XP_022958795.1 (uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 uncharacterized protein LOC111806568 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 55

[Close]

BLAST of Carg26738 vs. NCBI nr
Match: XP_023006679.1 (uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharacterized protein LOC111499335 [Cucurbita maxima])

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVVVASCLIGG+GLFLPAVVRPILDSYEASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGVGLFLPAVVRPILDSYEASKQAPQPVLSDV 55

[Close]

BLAST of Carg26738 vs. NCBI nr
Match: XP_022959928.1 (uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_023005103.1 uncharacterized protein LOC111498190 [Cucurbita maxima] >XP_023513591.1 uncharacterized protein LOC111778152 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.4 bits (254), Expect = 5.9e-19
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDV 55

[Close]

BLAST of Carg26738 vs. NCBI nr
Match: XP_008459762.1 (PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo] >ADN34227.1 fiber protein fb11 [Cucumis melo subsp. melo])

HSP 1 Score: 102.1 bits (253), Expect = 7.7e-19
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDSYEASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDV 55

[Close]

BLAST of Carg26738 vs. NCBI nr
Match: XP_004140520.1 (PREDICTED: uncharacterized protein LOC101213029 [Cucumis sativus] >KGN46491.1 hypothetical protein Csa_6G103010 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 7.7e-19
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASCLIGGIGLFLPA VRPILDSY ASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAFVRPILDSYAASKQAPQPVLSDV 55

[Close]

BLAST of Carg26738 vs. TAIR10
Match: AT2G46540.1 (unknown protein)

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-19
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKL+MFV QEPVV ASCLIGG+GLFLPAVVRPILDS EASKQ   P L+DV
Sbjct: 1  MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDV 55

[Close]

BLAST of Carg26738 vs. TrEMBL
Match: tr|A0A1S3CAX6|A0A1S3CAX6_CUCME (uncharacterized protein LOC103498799 OS=Cucumis melo OX=3656 GN=LOC103498799 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDSYEASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDV 55

[Close]

BLAST of Carg26738 vs. TrEMBL
Match: tr|A0A068UM29|A0A068UM29_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASCLIGGIGLFLPAVVRPILDS+E+SKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAVVRPILDSFESSKQVPQPVLSDV 55

[Close]

BLAST of Carg26738 vs. TrEMBL
Match: tr|E5GCM8|E5GCM8_CUCME (Fiber protein fb11 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDSYEASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDV 55

[Close]

BLAST of Carg26738 vs. TrEMBL
Match: tr|A0A0A0KFJ9|A0A0A0KFJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103010 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASCLIGGIGLFLPA VRPILDSY ASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAFVRPILDSYAASKQAPQPVLSDV 55

[Close]

BLAST of Carg26738 vs. TrEMBL
Match: tr|A0A2I4EG73|A0A2I4EG73_9ROSI (uncharacterized protein LOC108989287 OS=Juglans regia OX=51240 GN=LOC108989287 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVM+KL+MFVVQEPVV ASCLI G+GLFLPAVVRPILDS+EASKQ PQP LSDV
Sbjct: 1  MPVMQKLRMFVVQEPVVAASCLIAGVGLFLPAVVRPILDSFEASKQVPQPALSDV 55

The following BLAST results are available for this feature:

BLAST of Carg26738 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958795.1	1.4e-20	100.00	uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 unchar...	[more]
XP_023006679.1	1.8e-20	98.18	uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharac...	[more]
XP_022959928.1	5.9e-19	92.73	uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 unchar...	[more]
XP_008459762.1	7.7e-19	92.73	PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo] >ADN34227.1 fiber...	[more]
XP_004140520.1	7.7e-19	94.55	PREDICTED: uncharacterized protein LOC101213029 [Cucumis sativus] >KGN46491.1 hy...	[more]

BLAST of Carg26738 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46540.1	7.2e-19	81.82	unknown protein	[more]

BLAST of Carg26738 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26738 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CAX6\|A0A1S3CAX6_CUCME	5.1e-19	92.73	uncharacterized protein LOC103498799 OS=Cucumis melo OX=3656 GN=LOC103498799 PE=...	[more]
tr\|A0A068UM29\|A0A068UM29_COFCA	5.1e-19	92.73	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 ...	[more]
tr\|E5GCM8\|E5GCM8_CUCME	5.1e-19	92.73	Fiber protein fb11 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0KFJ9\|A0A0A0KFJ9_CUCSA	5.1e-19	94.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103010 PE=4 SV=1	[more]
tr\|A0A2I4EG73\|A0A2I4EG73_9ROSI	2.2e-17	85.45	uncharacterized protein LOC108989287 OS=Juglans regia OX=51240 GN=LOC108989287 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26738-RA	Carg26738-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36026:SF1	SUBFAMILY NOT NAMED	coord: 1..55
None	No IPR available	PANTHER	PTHR36026	FAMILY NOT NAMED	coord: 1..55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26738	Csa6G103010	Cucumber (Chinese Long) v2	carcuB0149
Carg26738	MELO3C022263	Melon (DHL92) v3.5.1	carmeB0140
Carg26738	ClCG06G002640	Watermelon (Charleston Gray)	carwcgB0132
Carg26738	CSPI06G08120	Wild cucumber (PI 183967)	carcpiB0154
Carg26738	CmaCh08G001360	Cucurbita maxima (Rimu)	carcmaB0181
Carg26738	CmaCh17G005140	Cucurbita maxima (Rimu)	carcmaB0180
Carg26738	CmoCh08G001370	Cucurbita moschata (Rifu)	carcmoB0189
Carg26738	CmoCh17G004860	Cucurbita moschata (Rifu)	carcmoB0188
Carg26738	Lsi09G016740	Bottle gourd (USVL1VR-Ls)	carlsiB123
Carg26738	Cp4.1LG17g10390	Cucurbita pepo (Zucchini)	carcpeB0198
Carg26738	Cp4.1LG12g04470	Cucurbita pepo (Zucchini)	carcpeB0197
Carg26738	CsGy6G008180	Cucumber (Gy14) v2	carcgybB0147
Carg26738	MELO3C022263.2	Melon (DHL92) v3.6.1	carmedB0144
Carg26738	CsaV3_6G008500	Cucumber (Chinese Long) v3	carcucB0157
Carg26738	Bhi12G001966	Wax gourd	carwgoB0172

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26738	Carg04963	Silver-seed gourd	carcarB092

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26738	Watermelon (97103) v1	carwmB0132
Carg26738	Watermelon (97103) v2	carwmbB0142