CmaCh08G001360 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTTTGAATCCATAACAGAGGTCAAGTACCCGTTTTCTTGTCCGGGTCATTGAAGAAGAGCGGAGTTCCACGCATTAGCTCTGCACTTTGAAGGATCATACCACTAAGGTTGTTCAGTTCAGGAAGCGAATCAGACGGAAGTTTCGAGAAGATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTACTCTTTCCTGTTTAAAAGCCCTAAGTTTTGTTCAATTTTTTCTATTTTCTTTTGATCGATGGGATTAAATCGTATACTTGTTTTATTTTTCGCTCAGATCTATCTATGGGGAACAGCATATATTTAAATGTTTTTTTTGGGAATTCTGTATAATTTAGGATCCGTAGAAACAATCACGATTGCAAACTCCTTATTTGACTAAATAGATTTTCGTATTTGAATCCTTTTGGTCGGATGCAGCTTTGCCAATAAATAATTTGTTTCGATGTTGGTATTTATTGGTTTAAACACATAAATGTTCGAGATTGGAGTTTTGAACTTCCATTCAAGCTGTGGCAATGAACTTCTGCAATGTGTTTCAATTCCTGGTTTTTGAGGCGTCTCTATTTTCATCCAAGCATGCTATTTAAGCGAGGTTGGAAGTTGTTTAAGATTCCTAGTAGTTTAGTTATTAAAGTTCTAAGAGGGAAGCATTTTAAGAATGGAAAACTTATCGTCGAGTAATGGTGGTTGTAGGTTAACCATTCCCACATCTGGCAAAGTGTATTTTGGGGGAGAAAAGTTTTAAAGAAGAGGATTATATTGAAATTGGAAATTAAATGTTAGTTGACATGGCCTCTAACCATTGAAATGTAAAACGTGTTTAAGAAAAGGTTAAATTCAACTACCATGATGAAAAAGAAAGTAGAGAGGAGGAGATGTAAGATAGAAATAGAGTAAAATGGATGCAATTTTTACATTTAAAATAATTTGGTTTAGTTTTACCATTTTGAAGTTCAGGGGTCCGTTTTTTTAATTCATTTTTTTAGAGTTTGAGGGTAACTTTTACACCTGAAAGTTTAGAGGTGCAATTGTTACACCCACCATACTTTGGAGGTGGTTTCTTCCACTTGCCCTTAAGTTTATTATTCTCTTATCCTTATTTGTTATGGAATTGCCTTGTACTTTCTTCAGACTTCTCAAACTACCCTCTAGAATGCCTGGTGGAACACATCATGTCACTTCATCAGAAACTACACATTCCACAGTTTTTGCAATGTCTCTCTCGCTTTAAGCACATTAGAAACAATCATTTATCTTTTCCTCGAAAATAATCTGTTGGCTAATATTCAACTTTTCACCCCCCCCCCACACACACCCACACACACACACCCACACACATACCGTCCCCTCATCTTCCATCTCGGCTCTCAAAATCTTCACTCTTCTACCTGACTCATCTATCAGACTAACACAAGGACTCCCCCTCATTAACTTCCTCTAACTACTCCTTTCCTCCTAATACACACACACACATTGGTTAGTGTTTAGGCCTGCCTCAATTATTTTCACAAGGCAACCTGGCCTACTGCATATGGTTGTTAAGGAAATTTATAGGATATGAAGTCCTAGGTAGGTAACTACTGTAGCATTCCCTCATTCCTTCTTACCACTTTTCTATTTACATTAGTCTTTATTTGACCTCTAGGTCAACCCGTAGTAATTCCTTATCCACTCTTTTTAACTCCTCCTTGACTCTCTCTATACGATCGGAATGTGAGCTCCCAAACAATTCTCTCTCCGCATCCTCCAAAGTAGTCTTCTTGGTCTGATCGTCAATCTTCAATGCTGTCTCCTTGGAAAGTGAACTGTGCACTTCCAACACTTCTGTGACTAACAACCTATCAGAGTTTGGAGCCACTACCTGCACAAAGTACACCATCGCCGCTAGTGACCAGTGGTGAAATGAAATACGATAACAAATTTGCAACCCCAATGACAAGAAATAACACTAAAGATAATGCTGAAGAATCAAAGAAAACTTACGAAGGTCCTTTCGAAATTACTCTCTCTTCCCCATTACCATCAACCCTGACAACTTCTTAAGTAATTACAAATATGCCACTGTTAAGTGTCAATATCCCTGATTTTATTTCCACTATTTCCCTACAGGTACTCTAACATATGGAGGGAGAAACCACCATCCCTGTCATTTAAAATTATCTCTGGAAACTTCACTATTTACATTGATATCATTTAATTCACCACCAGCTTCCTCTCCTAATCCGTTCTTCCACTTCAAGATCTCTTCTGACTTTTCATCTTCCTGGATCCCCTTCTATTTATTTTCAAAGATATCACTGATTCATCTAGCATTTTCACTCCCAAAGCGCTAAACATCATTAAATTTTTATACTCAATTTGGCTTGTCACTACTCGTGGATCATGTATCTACTTTTTGGTTTGATTAGTACCATATGGAACATATGTGACATTTTGGTTTCTAACATGTTATAACCCTTGTAGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCAAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTAAGTTCGAAATCTTCACAATTGTTAGAAATTCATGTTTTTCTGATTGTGTGGTTTGGTTGAATAATTTGGGCCAAGTGTAAAATGAATTGTCTGCATGCAACAAGTCTATATTTGGGCTAAGTGAGATTCTTGATCAACAAAATTTCCTTCTAAAAGAAGTTCATTTCTTTTTACCTTTTAGTGCCTCAACATTGGTGCTACTAATTATTCATTTACTTCAACATTTATTGTAAATTTATATATTGTCGACTTTGCAGGTGGTTGCAAGTATGACTGGAAAGAAATAGGGATGGATGATCAATCTCAGCAACACAAGAAATAGGCATGATCTTCTCTTCTGTCGTAAAATAAGCCCTCTACATTCTAATCGGATATCAAGTTTGATAGCGTAGCCATTTTTAGACATTACCTTGTTGTTTTATGCCCATACGTACGGCTGATTTTCAAGATATTTCAGTTCTAAGTTTGAAGCCTGAGTAAAACTTGCAACTCCTTTGATTGGTTTCCTACCATTTGTCTCCAAATATTTATACTGTTACAGGACTTCAGGATGAGACGATTATGAACTAATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTATCAGGTTTACCATTTTTCTTTAATGATAATTGGATCACAGGCTCCGTTTAATAACTA AGTTTGAATCCATAACAGAGGTCAAGTACCCGTTTTCTTGTCCGGGTCATTGAAGAAGAGCGGAGTTCCACGCATTAGCTCTGCACTTTGAAGGATCATACCACTAAGGTTGTTCAGTTCAGGAAGCGAATCAGACGGAAGTTTCGAGAAGATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCAAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTTGCAAGTATGACTGGAAAGAAATAGGGATGGATGATCAATCTCAGCAACACAAGAAATAGGCATGATCTTCTCTTCTGTCGTAAAATAAGCCCTCTACATTCTAATCGGATATCAAGTTTGATAGCGTAGCCATTTTTAGACATTACCTTGTTGTTTTATGCCCATACGTACGGCTGATTTTCAAGATATTTCAGTTCTAAGTTTGAAGCCTGAGTAAAACTTGCAACTCCTTTGATTGGTTTCCTACCATTTGTCTCCAAATATTTATACTGTTACAGGACTTCAGGATGAGACGATTATGAACTAATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTATCAGGTTTACCATTTTTCTTTAATGATAATTGGATCACAGGCTCCGTTTAATAACTA ATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCAAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTTGCAAGTATGACTGGAAAGAAATAG MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMTGKK
BLAST of CmaCh08G001360 vs. TrEMBL
Match: E5GCM8_CUCME (Fiber protein fb11 OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 7.8e-24 Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1
BLAST of CmaCh08G001360 vs. TrEMBL
Match: A0A068UM29_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027698001 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 1.0e-23 Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1
BLAST of CmaCh08G001360 vs. TrEMBL
Match: A0A0A0KFJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G103010 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 5.6e-22 Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 1
BLAST of CmaCh08G001360 vs. TrEMBL
Match: F4YFD0_CAMSI (Fiber protein fb11 OS=Camellia sinensis PE=2 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 4.8e-21 Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1
BLAST of CmaCh08G001360 vs. TrEMBL
Match: M5XLE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014538mg PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 1.1e-20 Identity = 54/63 (85.71%), Postives = 56/63 (88.89%), Query Frame = 1
BLAST of CmaCh08G001360 vs. TAIR10
Match: AT2G46540.1 (AT2G46540.1 unknown protein) HSP 1 Score: 101.7 bits (252), Expect = 1.7e-22 Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1
BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|659119636|ref|XP_008459762.1| (PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo]) HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23 Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1
BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|661887527|emb|CDP08658.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 116.7 bits (291), Expect = 1.5e-23 Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1
BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|449445519|ref|XP_004140520.1| (PREDICTED: uncharacterized protein LOC101213029 [Cucumis sativus]) HSP 1 Score: 110.9 bits (276), Expect = 8.1e-22 Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 1
BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|764624060|ref|XP_011468926.1| (PREDICTED: uncharacterized protein LOC101307919 isoform X2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 109.0 bits (271), Expect = 3.1e-21 Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1
BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|720037120|ref|XP_010267572.1| (PREDICTED: uncharacterized protein LOC104604760 [Nelumbo nucifera]) HSP 1 Score: 109.0 bits (271), Expect = 3.1e-21 Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |