CmaCh08G001360 (gene) Cucurbita maxima (Rimu)

NameCmaCh08G001360
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionFiber protein fb11
LocationCma_Chr08 : 732902 .. 736184 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTGAATCCATAACAGAGGTCAAGTACCCGTTTTCTTGTCCGGGTCATTGAAGAAGAGCGGAGTTCCACGCATTAGCTCTGCACTTTGAAGGATCATACCACTAAGGTTGTTCAGTTCAGGAAGCGAATCAGACGGAAGTTTCGAGAAGATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTACTCTTTCCTGTTTAAAAGCCCTAAGTTTTGTTCAATTTTTTCTATTTTCTTTTGATCGATGGGATTAAATCGTATACTTGTTTTATTTTTCGCTCAGATCTATCTATGGGGAACAGCATATATTTAAATGTTTTTTTTGGGAATTCTGTATAATTTAGGATCCGTAGAAACAATCACGATTGCAAACTCCTTATTTGACTAAATAGATTTTCGTATTTGAATCCTTTTGGTCGGATGCAGCTTTGCCAATAAATAATTTGTTTCGATGTTGGTATTTATTGGTTTAAACACATAAATGTTCGAGATTGGAGTTTTGAACTTCCATTCAAGCTGTGGCAATGAACTTCTGCAATGTGTTTCAATTCCTGGTTTTTGAGGCGTCTCTATTTTCATCCAAGCATGCTATTTAAGCGAGGTTGGAAGTTGTTTAAGATTCCTAGTAGTTTAGTTATTAAAGTTCTAAGAGGGAAGCATTTTAAGAATGGAAAACTTATCGTCGAGTAATGGTGGTTGTAGGTTAACCATTCCCACATCTGGCAAAGTGTATTTTGGGGGAGAAAAGTTTTAAAGAAGAGGATTATATTGAAATTGGAAATTAAATGTTAGTTGACATGGCCTCTAACCATTGAAATGTAAAACGTGTTTAAGAAAAGGTTAAATTCAACTACCATGATGAAAAAGAAAGTAGAGAGGAGGAGATGTAAGATAGAAATAGAGTAAAATGGATGCAATTTTTACATTTAAAATAATTTGGTTTAGTTTTACCATTTTGAAGTTCAGGGGTCCGTTTTTTTAATTCATTTTTTTAGAGTTTGAGGGTAACTTTTACACCTGAAAGTTTAGAGGTGCAATTGTTACACCCACCATACTTTGGAGGTGGTTTCTTCCACTTGCCCTTAAGTTTATTATTCTCTTATCCTTATTTGTTATGGAATTGCCTTGTACTTTCTTCAGACTTCTCAAACTACCCTCTAGAATGCCTGGTGGAACACATCATGTCACTTCATCAGAAACTACACATTCCACAGTTTTTGCAATGTCTCTCTCGCTTTAAGCACATTAGAAACAATCATTTATCTTTTCCTCGAAAATAATCTGTTGGCTAATATTCAACTTTTCACCCCCCCCCCACACACACCCACACACACACACCCACACACATACCGTCCCCTCATCTTCCATCTCGGCTCTCAAAATCTTCACTCTTCTACCTGACTCATCTATCAGACTAACACAAGGACTCCCCCTCATTAACTTCCTCTAACTACTCCTTTCCTCCTAATACACACACACACATTGGTTAGTGTTTAGGCCTGCCTCAATTATTTTCACAAGGCAACCTGGCCTACTGCATATGGTTGTTAAGGAAATTTATAGGATATGAAGTCCTAGGTAGGTAACTACTGTAGCATTCCCTCATTCCTTCTTACCACTTTTCTATTTACATTAGTCTTTATTTGACCTCTAGGTCAACCCGTAGTAATTCCTTATCCACTCTTTTTAACTCCTCCTTGACTCTCTCTATACGATCGGAATGTGAGCTCCCAAACAATTCTCTCTCCGCATCCTCCAAAGTAGTCTTCTTGGTCTGATCGTCAATCTTCAATGCTGTCTCCTTGGAAAGTGAACTGTGCACTTCCAACACTTCTGTGACTAACAACCTATCAGAGTTTGGAGCCACTACCTGCACAAAGTACACCATCGCCGCTAGTGACCAGTGGTGAAATGAAATACGATAACAAATTTGCAACCCCAATGACAAGAAATAACACTAAAGATAATGCTGAAGAATCAAAGAAAACTTACGAAGGTCCTTTCGAAATTACTCTCTCTTCCCCATTACCATCAACCCTGACAACTTCTTAAGTAATTACAAATATGCCACTGTTAAGTGTCAATATCCCTGATTTTATTTCCACTATTTCCCTACAGGTACTCTAACATATGGAGGGAGAAACCACCATCCCTGTCATTTAAAATTATCTCTGGAAACTTCACTATTTACATTGATATCATTTAATTCACCACCAGCTTCCTCTCCTAATCCGTTCTTCCACTTCAAGATCTCTTCTGACTTTTCATCTTCCTGGATCCCCTTCTATTTATTTTCAAAGATATCACTGATTCATCTAGCATTTTCACTCCCAAAGCGCTAAACATCATTAAATTTTTATACTCAATTTGGCTTGTCACTACTCGTGGATCATGTATCTACTTTTTGGTTTGATTAGTACCATATGGAACATATGTGACATTTTGGTTTCTAACATGTTATAACCCTTGTAGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCAAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTAAGTTCGAAATCTTCACAATTGTTAGAAATTCATGTTTTTCTGATTGTGTGGTTTGGTTGAATAATTTGGGCCAAGTGTAAAATGAATTGTCTGCATGCAACAAGTCTATATTTGGGCTAAGTGAGATTCTTGATCAACAAAATTTCCTTCTAAAAGAAGTTCATTTCTTTTTACCTTTTAGTGCCTCAACATTGGTGCTACTAATTATTCATTTACTTCAACATTTATTGTAAATTTATATATTGTCGACTTTGCAGGTGGTTGCAAGTATGACTGGAAAGAAATAGGGATGGATGATCAATCTCAGCAACACAAGAAATAGGCATGATCTTCTCTTCTGTCGTAAAATAAGCCCTCTACATTCTAATCGGATATCAAGTTTGATAGCGTAGCCATTTTTAGACATTACCTTGTTGTTTTATGCCCATACGTACGGCTGATTTTCAAGATATTTCAGTTCTAAGTTTGAAGCCTGAGTAAAACTTGCAACTCCTTTGATTGGTTTCCTACCATTTGTCTCCAAATATTTATACTGTTACAGGACTTCAGGATGAGACGATTATGAACTAATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTATCAGGTTTACCATTTTTCTTTAATGATAATTGGATCACAGGCTCCGTTTAATAACTA

mRNA sequence

AGTTTGAATCCATAACAGAGGTCAAGTACCCGTTTTCTTGTCCGGGTCATTGAAGAAGAGCGGAGTTCCACGCATTAGCTCTGCACTTTGAAGGATCATACCACTAAGGTTGTTCAGTTCAGGAAGCGAATCAGACGGAAGTTTCGAGAAGATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCAAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTTGCAAGTATGACTGGAAAGAAATAGGGATGGATGATCAATCTCAGCAACACAAGAAATAGGCATGATCTTCTCTTCTGTCGTAAAATAAGCCCTCTACATTCTAATCGGATATCAAGTTTGATAGCGTAGCCATTTTTAGACATTACCTTGTTGTTTTATGCCCATACGTACGGCTGATTTTCAAGATATTTCAGTTCTAAGTTTGAAGCCTGAGTAAAACTTGCAACTCCTTTGATTGGTTTCCTACCATTTGTCTCCAAATATTTATACTGTTACAGGACTTCAGGATGAGACGATTATGAACTAATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTATCAGGTTTACCATTTTTCTTTAATGATAATTGGATCACAGGCTCCGTTTAATAACTA

Coding sequence (CDS)

ATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCAAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTTGCAAGTATGACTGGAAAGAAATAG

Protein sequence

MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMTGKK
BLAST of CmaCh08G001360 vs. TrEMBL
Match: E5GCM8_CUCME (Fiber protein fb11 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 7.8e-24
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASCIIGGIGLFLPA VRPILDS+EASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. TrEMBL
Match: A0A068UM29_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027698001 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDSFE+SKQVPQPVLSDVVA MT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAVVRPILDSFESSKQVPQPVLSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. TrEMBL
Match: A0A0A0KFJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G103010 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-22
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDS+ ASKQ PQPVLSDVVA MT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAFVRPILDSYAASKQAPQPVLSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. TrEMBL
Match: F4YFD0_CAMSI (Fiber protein fb11 OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.8e-21
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLK+FVVQEPVVTASC+I G GLFLPAVVRPILDSFE SKQVP P L+DVVA MT
Sbjct: 1  MPVMEKLKIFVVQEPVVTASCLIAGFGLFLPAVVRPILDSFETSKQVPPPALNDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. TrEMBL
Match: M5XLE6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014538mg PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-20
Identity = 54/63 (85.71%), Postives = 56/63 (88.89%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          M VMEKL+MFV QEPVV ASC+I G GLFLPAVVRPILDSFEASKQVPQP LSDVVA MT
Sbjct: 1  MAVMEKLRMFVAQEPVVAASCLIAGFGLFLPAVVRPILDSFEASKQVPQPALSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. TAIR10
Match: AT2G46540.1 (AT2G46540.1 unknown protein)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-22
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKL+MFV QEPVV ASC+IGG+GLFLPAVVRPILDS EASKQV  P L+DV+A +T
Sbjct: 1  MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|659119636|ref|XP_008459762.1| (PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASCIIGGIGLFLPA VRPILDS+EASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|661887527|emb|CDP08658.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDSFE+SKQVPQPVLSDVVA MT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAVVRPILDSFESSKQVPQPVLSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|449445519|ref|XP_004140520.1| (PREDICTED: uncharacterized protein LOC101213029 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 8.1e-22
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDS+ ASKQ PQPVLSDVVA MT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAFVRPILDSYAASKQAPQPVLSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|764624060|ref|XP_011468926.1| (PREDICTED: uncharacterized protein LOC101307919 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-21
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          M VMEKLKMFVVQEPVV ASC+I G+GLFLPAVVRP+LDSFEASKQVPQP LSDVVA MT
Sbjct: 1  MGVMEKLKMFVVQEPVVAASCLIAGVGLFLPAVVRPMLDSFEASKQVPQPALSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of CmaCh08G001360 vs. NCBI nr
Match: gi|720037120|ref|XP_010267572.1| (PREDICTED: uncharacterized protein LOC104604760 [Nelumbo nucifera])

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-21
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          M VMEKLKMF+VQEPVV ASC+I G+GLFLPAVVRPILDSFE+SKQVPQP LSDVVA MT
Sbjct: 1  MAVMEKLKMFIVQEPVVAASCLIAGVGLFLPAVVRPILDSFESSKQVPQPALSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
E5GCM8_CUCME7.8e-2495.24Fiber protein fb11 OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A068UM29_COFCA1.0e-2393.65Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027698001 PE=4 SV=1[more]
A0A0A0KFJ9_CUCSA5.6e-2288.89Uncharacterized protein OS=Cucumis sativus GN=Csa_6G103010 PE=4 SV=1[more]
F4YFD0_CAMSI4.8e-2185.71Fiber protein fb11 OS=Camellia sinensis PE=2 SV=1[more]
M5XLE6_PRUPE1.1e-2085.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014538mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G46540.11.7e-2279.37 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659119636|ref|XP_008459762.1|1.1e-2395.24PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo][more]
gi|661887527|emb|CDP08658.1|1.5e-2393.65unnamed protein product [Coffea canephora][more]
gi|449445519|ref|XP_004140520.1|8.1e-2288.89PREDICTED: uncharacterized protein LOC101213029 [Cucumis sativus][more]
gi|764624060|ref|XP_011468926.1|3.1e-2187.30PREDICTED: uncharacterized protein LOC101307919 isoform X2 [Fragaria vesca subsp... [more]
gi|720037120|ref|XP_010267572.1|3.1e-2185.71PREDICTED: uncharacterized protein LOC104604760 [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009735 response to cytokinin
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G001360.1CmaCh08G001360.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36026FAMILY NOT NAMEDcoord: 1..63
score: 6.1
NoneNo IPR availablePANTHERPTHR36026:SF1SUBFAMILY NOT NAMEDcoord: 1..63
score: 6.1

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh08G001360CmaCh17G005140Cucurbita maxima (Rimu)cmacmaB375