Carg04963 (gene) Silver-seed gourd

NameCarg04963
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionFiber protein fb11
LocationCucurbita_argyrosperma_scaffold_060 : 507157 .. 510776 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTACTCTTTCCTGTTTAAAAGCCCTAAGTTTTGTTCAATTTTTTCTATTTTCTTTTGATCGATGGGATTAAATGGTATACTTGTTTTATTTTTCGCTCAGATCTATCTATGGGGAACAGCATATATTTAAATGTTTTTTTTTTTTTTGGGAATTCTGTATAATCTAGGATCCGAAGAAACAATCACGATTGCAAACTCCTTATTTGACTAAATAGATTTTCGTATTTGAATCCTTTTGGTCGGATGCAGTTTTGCCAGTAAATAATTTGATTCTATGTTGGTATTTATTGGTTTAAACACATATAAGTGTTCGAGATTGGAGTTTTAAACTTCCATTCAAGCTGTGGCAATGAACTTCTGCAATGTGTTTCAATTCCTGGTTTTTGAGGCGTCTCTATTTTCATCCAAGCATGCTAACTAAGCGAGGTTGGAACTTGATCAAGATTCCTAGTAGTTTAGTTATTAAAGTTCTAAGAGGGAAGCATTGTAAGAATGGAAAACTTATCCTCGAGTAATGGTGGTTGTAGGTTAACCATTCCCACATCTGCAAAGTGTATTTTGGGGGAGAACTTTTAAAGAAGAGGATTATATTGAAATTGGGAATTAAATGTTAGTTGACATGGCCTCTAACCATTGGCTTTCTAGTGCTGTTAATGCAATTTTTTCCTTTGCCCCTCCTGGCTAGTGTTTTGGAGGGCATGAAGTTAGGACTTAAGCTAGAGGCACAAAAAAGGTGAGAGCTTTTGCGAGGTGAAACCACAATTTGTGTATAAGATCCCTCAAGTATGAGATAGGGAAAATTAAGGATTAACTATTAAAGAAAAACAACAGTTCACGTACAAAGATTACACAAAATCTTACAAATAATAAAGTTCAAAATTATGTTGCAGATACCCTAAAATGACAACCGGTCATCACTAAATAGGTCCGTATCTTCATTTTTCCCAATAACTAGTCCTATGTGCTTCCTCACCTTTTGACAAGACTCATCAAATGTTGGAAAAGGGTGGAAAAGTACAAGTCCTTGGAAAGTAAAAAAAACAAGAGGGAGAAGAGGAGATATGAGTAAGAAATAGAGTAAAATAGATGCAATGTTTACATTTACAATACTTCGAAGCAAATCTGGAAGAGGGATGTTAAGATTACTAAAGCTGAAATGTAAAATGTGTTTAAGAAAAGGTTAAATTCAACAACCATGATGAAAAAGAAAGTAGAGAGGAGGAGATGTAAGATAGAAATAGAGCAAAATGGATGCAATTTTTACATTTAAAATAATTTGGTTTAGTTTTACCATTTTGAAGTTCAGGGGTTCGTTTTTTTTGTTCATTTCTTTAGAGTTTGAGGGTAACTTTTACACTTGAAAGTTTAGAGGTGCAATTGTTACAACCACCATACTTTGGAGGTGGTTTCTTCCACTTGCCCTTAAGTTTACTATTCTCTTATCCTTATTTGTTAAGGAATTGCCCTGTACTTTCTTCAGACTTCTCAAACTACCCTCTAGAATGGCTGGTGGAACACATCATGTCACTACATCAGAAACTACACATTCCACAGTTTTTGCAATGTCTGTCTCGCTTTAAGCACATTAGAAACAACCATTTATCTTTTCCTCGAAAATAATCTGTTGGCTAATATTCGACTTTTCGCCTCCCCCTCCCCCCCCACACACACACCGTCTCCTCATCTTCCATTTCGGCTCTCAAATCTTCACTCTTGTACCCGACTCATCTATCAGACTAACACAAGAACTCCCCCTCATTAACTTCCTGTAACTACTCCTTTCCTCCTAATACACACACACACATTGGTAAGTGTTTAGGCCTGCCTACTGCATATGGTTGTTAAGGAAATTTATAGGATATGAAGTCCTAGGTAGGTAACTACTGTAGCATGCACTCATTCCTTCTTACCACTTTTCTATTTACATTGGTCCTTATTTGACCTCTAGGTCAACCCGTAGTAATTCCTTATCGACTCTTTTTAACTCCTCCTTGACTCTCTCTATACGAGCTTCCAAACAATTCTCTCTCCGCATCCTCCAAATTAGTCTTCTTGGTCTGATCGTCAATCTTCAATGCTGCCTCCTTGGAAAGTGAACTGTGCTCCTCTAACACTTCTGTGACTAACAACCTATCAGAGTTTGGAGCCACTACCTGCACAAAGTACACCATCGCCGCTAGTGACCAGTGGTGAAATGAAATACGATAACAAATTTGCAACCCCAATGACAAGAAATAACACTAAAAGATAATGCTGCAGAATCAAAGAAAACTTACGAAGGTCCTTTCGAGATTACTCTCTCTTCCCCATTACCATCAACCCTGACAACTTCTTAAGTAATTACAAATATGCCACTGTTAAGTGTCAATATCCCTGATTTTATTTCCACTATTTCCCTACAGGTATTCTAACATATGGAGGGAGAAACCACCATCCCTGTCATTTAAAATTATCTCTGGAAACTTCACTATTTACATTGATATCATTTAATTCACCACCAGCTTCCTCTCCTAATCCGTTCTTCCACTCCAAGATCTCTTCTGACTTTTCACCTTCCTGGATCCCATTCTATTTATTTTCAAAGATATTACTGATTCATCTAGCATTTTCACTCCCAAAGCGCTAAACATCATTAAATTTTTATACTGAATTTGGCTTGTCACTACTCGTGGATCATGTATCTACTTTTTGGTTTGATTAGTACCATATGGAACATATGTGACATTTTGGTTTCTAACATGTTATAACCCTTGTAGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCTAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTAAGTTCAAAATCTTCACAAAGTGTAAAATGAATTGTCTGCATGCAACAAGTCTGTATTTTTGTAGTTGTATAATTTTCAGCTTTTTGGTAAGTGAGATTCCTTGATCAACACAATTTCCTTCTAAAAGAAGTTCATTTCTTTTTGCCTTTTAGTGCCTCAACATTGGTGCTACTAAATTATTCATTTACTTCAACATTTATTGTAAATTTATATATATTGTCGACTTTGCAGGTGGTTGCAAGTATGACTGGAAAGAAATAGGGATGATCGATCTCAGCAACACAAGAAGGATTGTTCTTAATGGATCATTGTTTTTTTTTCTTAATCAAATTTCCTGCTCTTCTGCCGTAAAATAAGCCCTCTACAATCTAATCGGATATCAAGTTTGATAGCGTAGCCATTTTTAGACATTACCTTGTTGTTTTATGCCCATACACAAGGCTGATTTTCAAGATATTTCAGTTCTAAGTTTGAAGCCTGAGTAAAACTTGCATAAATTGAGCCCTACAAACTCCTTTGATTGGTTTCCTACCATTCGTCTCCAAATATTTATACTGTTACAGGACTTCATGATGAGACGATTATGAACCGATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTACCAGGTTTACCATTTTTCTTTAATGATAATTGGATCCAAGTTCCGTTTGAT

mRNA sequence

AGAAGATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCTAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTTGCAAGTATGACTGGAAAGAAATAGGGATGATCGATCTCAGCAACACAAGAAGGATTGTTCTTAATGGATCATTGTTTTTTTTTCTTAATCAAATTTCCTGCTCTTCTGCCGTAAAATAAGCCCTCTACAATCTAATCGGATATCAAGTTTGATAGCGTAGCCATTTTTAGACATTACCTTGTTGTTTTATGCCCATACACAAGGCTGATTTTCAAGATATTTCAGTTCTAAGTTTGAAGCCTGAGTAAAACTTGCATAAATTGAGCCCTACAAACTCCTTTGATTGGTTTCCTACCATTCGTCTCCAAATATTTATACTGTTACAGGACTTCATGATGAGACGATTATGAACCGATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTACCAGGTTTACCATTTTTCTTTAATGATAATTGGATCCAAGTTCCGTTTGAT

Coding sequence (CDS)

ATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCTAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTTGCAAGTATGACTGGAAAGAAATAG

Protein sequence

MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMTGKK
BLAST of Carg04963 vs. NCBI nr
Match: XP_022959928.1 (uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_023005103.1 uncharacterized protein LOC111498190 [Cucurbita maxima] >XP_023513591.1 uncharacterized protein LOC111778152 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.1 bits (305), Expect = 6.8e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. NCBI nr
Match: XP_008459762.1 (PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo] >ADN34227.1 fiber protein fb11 [Cucumis melo subsp. melo])

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASCIIGGIGLFLPA VRPILDS+EASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. NCBI nr
Match: CDP08658.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 116.7 bits (291), Expect = 2.9e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDSFE+SKQVPQPVLSDVVA MT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAVVRPILDSFESSKQVPQPVLSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. NCBI nr
Match: XP_022958795.1 (uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 uncharacterized protein LOC111806568 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 2.9e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. NCBI nr
Match: XP_023006679.1 (uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharacterized protein LOC111499335 [Cucurbita maxima])

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-23
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGG+GLFLPAVVRPILDS+EASKQ PQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGVGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. TAIR10
Match: AT2G46540.1 (unknown protein)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-22
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKL+MFV QEPVV ASC+IGG+GLFLPAVVRPILDS EASKQV  P L+DV+A +T
Sbjct: 1  MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. TrEMBL
Match: tr|A0A1S3CAX6|A0A1S3CAX6_CUCME (uncharacterized protein LOC103498799 OS=Cucumis melo OX=3656 GN=LOC103498799 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASCIIGGIGLFLPA VRPILDS+EASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. TrEMBL
Match: tr|E5GCM8|E5GCM8_CUCME (Fiber protein fb11 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASCIIGGIGLFLPA VRPILDS+EASKQVPQPVLSDVVASMT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDVVASMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. TrEMBL
Match: tr|A0A068UM29|A0A068UM29_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-23
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDSFE+SKQVPQPVLSDVVA MT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAVVRPILDSFESSKQVPQPVLSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. TrEMBL
Match: tr|A0A2I4EG73|A0A2I4EG73_9ROSI (uncharacterized protein LOC108989287 OS=Juglans regia OX=51240 GN=LOC108989287 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.9e-22
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVM+KL+MFVVQEPVV ASC+I G+GLFLPAVVRPILDSFEASKQVPQP LSDVVA MT
Sbjct: 1  MPVMQKLRMFVVQEPVVAASCLIAGVGLFLPAVVRPILDSFEASKQVPQPALSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

BLAST of Carg04963 vs. TrEMBL
Match: tr|A0A0A0KFJ9|A0A0A0KFJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103010 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0

Query: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDVVASMT 60
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDS+ ASKQ PQPVLSDVVA MT
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAFVRPILDSYAASKQAPQPVLSDVVAGMT 60

Query: 61 GKK 64
          GKK
Sbjct: 61 GKK 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022959928.16.8e-25100.00uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 unchar... [more]
XP_008459762.12.2e-2395.24PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo] >ADN34227.1 fiber... [more]
CDP08658.12.9e-2393.65unnamed protein product [Coffea canephora][more]
XP_022958795.12.9e-2393.65uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 unchar... [more]
XP_023006679.13.7e-2392.06uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharac... [more]
Match NameE-valueIdentityDescription
AT2G46540.11.7e-2279.37unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CAX6|A0A1S3CAX6_CUCME1.4e-2395.24uncharacterized protein LOC103498799 OS=Cucumis melo OX=3656 GN=LOC103498799 PE=... [more]
tr|E5GCM8|E5GCM8_CUCME1.4e-2395.24Fiber protein fb11 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A068UM29|A0A068UM29_COFCA1.9e-2393.65Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 ... [more]
tr|A0A2I4EG73|A0A2I4EG73_9ROSI7.9e-2287.30uncharacterized protein LOC108989287 OS=Juglans regia OX=51240 GN=LOC108989287 P... [more]
tr|A0A0A0KFJ9|A0A0A0KFJ9_CUCSA1.0e-2188.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103010 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg04963-RACarg04963-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36026FAMILY NOT NAMEDcoord: 1..62

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg04963Carg26738Silver-seed gourdcarcarB092