Carg26738-RA (mRNA) Silver-seed gourd

Overview
NameCarg26738-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionFiber protein fb11
LocationCucurbita_argyrosperma_scaffold_197 : 174128 .. 177430 (-)
Sequence length351
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAGATCAAAATCAGTTTGGTTCTATCGTTCTCTGGTCCGGTCCATCCAAAAACCGCAAATCTTTTCAGTCGTAAACTTTGGACTTCGAAGAATCAAGCCACGAACGTTCAGTTCAGGAAGCGAATCAGACGAAACCTTCAAGAAAATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTACTTGCTCTTTCCTCTTTAGAGCCCTAATTATCGTTCAATTTTTCATTTCTTTTGATCGATGGCATGAATCCATATGTTTTCTTTCAATTGTCGCTCATATCTATCTATTGGGAAGATCATATTTAAATGTTTTCTTTTCGGGTATTCTATATAGTTTCGGATGCGAAAAAACAATGTCGATTGAAAGCTCCTTTGTCTGACTAAATAGATTTTCGTATTTCAACCTTGTGTGTAGGATTCAGCTTTGCCTATATATATTCTGTTTCGGTGTTTCTAGTGACCGTAAATTTGTTAAGATGTTGGGATTTGTTCGTTTAAATGCTTATTAATGTTCGAGATGGGAGTTTTGGACCTTTGAGCCGGCTACCGAAGTGAGCTGCTAGCCCAAGACATACACACCTTTTCAATAGAAATGTACACGCAAGCCAAGATGGCTGAACTATCCCGAGACATAGGATGATATCATGATGCATAGGTTGCATTGTTGGGAACCAAGATGATCACTGAGATGCGATCTTGCACTTGAGAGACCTTGGCGTAGAATAGAGGCAAGGTCAAGCCAAATGACTAGGCCTAGTGTAGAGACAAGTTGACTAGGAGTCTGTGTGGTTGAACAAGCTTAGATGCCGCACGAGTTGTGTTCGGTTGATGAAGGAGAACCTCACCTAAGGTCCGATAAAGCCACGAAAACGGGTAAAAATATGAATGAGGCTTGAGCTCCCCTTAAGACTTGTCATGAGAGTGTCAAGATCATAACACTGCACAGTTGAAAATGTACAACCGATAGTCGAACTATGGTTCATATACTAAGAGTATAAGAATGAAATAGAGAAATTAAGGATTTACCATTAAAGACGAACTATGGTTCATATACTAAGAATCTACAAAATCTTACAGATAAAATTCAAATTACGTAACGAATATCCTAAGAATTGGGACATGTCTTCACTAAATAGGTTCTCATATCTATGTTGGCCATAACTAGTCATATGTGCTTCCTCTGCCTAATTTAACTGTAGTTATAAAAGAAAATGTTGCCCATCACTCAACAATATTAGATGCTCCACCTAGCTTTAGCATCAAGTGTGAACTATCTGGAACTTTTAAACAACACTGAAATGAGGGTTTGAAATAATTGCTAATATAGGTGGCAATGCAAGGGATAAGATTTTATGGAGTTTAGACTCTTGAGGTCTTTCTTCAGTTAAAACTGCTTGTATATTGGGTAATCAATTTCATAATAATTCTGAGGCTTCTTGCTCAGCTTATCAAATGTTGGAAAATTGTGGGGAAAAAGGGTGCTTGCTAAGTTGAAAACATTCTAATGGAAAGTTTACAATGTTATTATTCTATTCCTAGCAGTTTCAATTTGAGAAAGAAGGTTTTATGAGTTCATCCTTCACAGAGAAACTATGTCCTGTTCCATTTGGAGATGTTTTGCAAGATAGATTGCGGGAAATTTGTTCTCAGAATTGGATTTAAGTTCCACCGATAATTTAGCATCACTGAGAACTGGGCATCTTCAGCCAATTAGCCCTGTGCTCCCCAACACTCCTAGGATTAGCAACCTACCAGAGTTTGGAGCCACTTACCTGCATATGTTTATACCAACTAGTCACAGGTTGTTAAATGAAACACAATAGCAAATTGATAGGACCCCACTGGCCAGAAAATAACAAATAGAACTATAAAGCAATATGAAATTGATAATCGTGGACATGCATTTGATGAATCTCTGCAACCTTGACCTAAAGTTTCAAAGGTTTCTTTCTTCAACAAATAAGTATCCTTAGCTTTGTTCATCCTTCTTAAAAAGGTACTACATTTGGACTTTTTGTGTTTCTTACCACAATAACCAAAAACTGAACTAAAAGAAAAATGACTTATTTCTTCCCTACAACCAATAAACTCCATTGATTAATATCCATTTTCAACATCTTGATGAAGCAAGAGAGAATGAGAGGTGGAATTACCGCCTTACCTTCTTCATTTTTCATGATAAACTGATAAGTGAGATCAAGTCCAATTTTTACGCGCTTTTTCGGTTTGATTGGCTACCACATGGAACATATGTGTACATTTTGGTTTCTTACATATTACAAACCTTGTAGGTCTTTTCCTTCCTGCCGTCGTAAGACCAATTCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTAAGTACGGAATCTTGACAAGTTTTAGACATTCATTCTTTTCTGATGTGTGGTTTGGTTGGATCATTTGGGCCAAATGTAAACGTGAGTTTCTTTGCTTATGTCTTGAAGTTTATGTTTCTTTGGTACTTATTATCATTCTCAGCCTCTGGTAAGTGAGATTCCTTGCCACTTTCCAAAAACATATGCCAGCCAGTATCTAAGTGGGGAACAATCAATAAATCTACCCTAAAAAAACCAACAATTTCTTGTTTTTCCCTTTCTTTGATAGGAGGAAATTTTTTTACTTTTCTTACAATGTTCATTGTAAATTTCTGTATTGTCAAATTTGTAGGTGGTTGCGAGTATGACTGGAAAGAAATGAGGATGATTGGTATCGGTGACATAAGAAGGTTGTTCTTGATGGATCAATGATCATTCTCTTCTGCCATAAAATAAGTCTGTACAATCTTTTTAAACGTCATGGTTGATAGCAATAGTTATTGCTACACATTCACTTGTTTTATGCCCAATGCATAAGACTGATTTTCAAGATATTTCAGCTTTGAGCACTCCGTTTGAAGCCCTGTCAAAACTTGGTTTCACCATAAATTGAGTTCTAAAAACTCGGTTTGATTTTCTTTTCTTGTTTGTTTCAAATGTGGGATCGAACCGTTGACTTTTGGGATGGTAAGTTGATAATTGGCAAAAAGTCAAATTGAGCGTACCTCATTATATACATTATGAAAGAACTAAAACACGAATCACTTCATCCTTGTTTCTAATGTTCTTTCATTTTGGTTGTTTTTGTTTGAATTAATTATTTTATTCACATAGTTTTTTGGGTTCATTTATGAAGGTTGAAGGTTTAAGTTGCATTACGAATCATTATGATATGTAG

mRNA sequence

TAAAGATCAAAATCAGTTTGGTTCTATCGTTCTCTGGTCCGGTCCATCCAAAAACCGCAAATCTTTTCAGTCGTAAACTTTGGACTTCGAAGAATCAAGCCACGAACGTTCAGTTCAGGAAGCGAATCAGACGAAACCTTCAAGAAAATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTCTTTTCCTTCCTGCCGTCGTAAGACCAATTCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTTGAAGGTTTAAGTTGCATTACGAATCATTATGATATGTAG

Coding sequence (CDS)

ATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTCTTTTCCTTCCTGCCGTCGTAAGACCAATTCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTTGAAGGTTTAAGTTGCATTACGAATCATTATGATATGTAG

Protein sequence

MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVEGLSCITNHYDM
Homology
[Close]
BLAST of Carg26738-RA vs. NCBI nr
Match: XP_022958795.1 (uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 uncharacterized protein LOC111806568 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 55

[Close]
BLAST of Carg26738-RA vs. NCBI nr
Match: XP_023006679.1 (uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharacterized protein LOC111499335 [Cucurbita maxima])

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVVVASCLIGG+GLFLPAVVRPILDSYEASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVVASCLIGGVGLFLPAVVRPILDSYEASKQAPQPVLSDV 55

[Close]
BLAST of Carg26738-RA vs. NCBI nr
Match: XP_022959928.1 (uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_023005103.1 uncharacterized protein LOC111498190 [Cucurbita maxima] >XP_023513591.1 uncharacterized protein LOC111778152 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.4 bits (254), Expect = 5.9e-19
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVTASCIIGGIGLFLPAVVRPILDSFEASKQVPQPVLSDV 55

[Close]
BLAST of Carg26738-RA vs. NCBI nr
Match: XP_008459762.1 (PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo] >ADN34227.1 fiber protein fb11 [Cucumis melo subsp. melo])

HSP 1 Score: 102.1 bits (253), Expect = 7.7e-19
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDSYEASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDV 55

[Close]
BLAST of Carg26738-RA vs. NCBI nr
Match: XP_004140520.1 (PREDICTED: uncharacterized protein LOC101213029 [Cucumis sativus] >KGN46491.1 hypothetical protein Csa_6G103010 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 7.7e-19
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASCLIGGIGLFLPA VRPILDSY ASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAFVRPILDSYAASKQAPQPVLSDV 55

[Close]
BLAST of Carg26738-RA vs. TAIR10
Match: AT2G46540.1 (unknown protein)

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-19
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKL+MFV QEPVV ASCLIGG+GLFLPAVVRPILDS EASKQ   P L+DV
Sbjct: 1  MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDV 55

[Close]
BLAST of Carg26738-RA vs. TrEMBL
Match: tr|A0A1S3CAX6|A0A1S3CAX6_CUCME (uncharacterized protein LOC103498799 OS=Cucumis melo OX=3656 GN=LOC103498799 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDSYEASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDV 55

[Close]
BLAST of Carg26738-RA vs. TrEMBL
Match: tr|A0A068UM29|A0A068UM29_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASCLIGGIGLFLPAVVRPILDS+E+SKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAVVRPILDSFESSKQVPQPVLSDV 55

[Close]
BLAST of Carg26738-RA vs. TrEMBL
Match: tr|E5GCM8|E5GCM8_CUCME (Fiber protein fb11 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDSYEASKQ PQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCIIGGIGLFLPAFVRPILDSYEASKQVPQPVLSDV 55

[Close]
BLAST of Carg26738-RA vs. TrEMBL
Match: tr|A0A0A0KFJ9|A0A0A0KFJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103010 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.1e-19
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVMEKLKMFVVQEPVV ASCLIGGIGLFLPA VRPILDSY ASKQAPQPVLSDV
Sbjct: 1  MPVMEKLKMFVVQEPVVAASCLIGGIGLFLPAFVRPILDSYAASKQAPQPVLSDV 55

[Close]
BLAST of Carg26738-RA vs. TrEMBL
Match: tr|A0A2I4EG73|A0A2I4EG73_9ROSI (uncharacterized protein LOC108989287 OS=Juglans regia OX=51240 GN=LOC108989287 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 1  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDV 56
          MPVM+KL+MFVVQEPVV ASCLI G+GLFLPAVVRPILDS+EASKQ PQP LSDV
Sbjct: 1  MPVMQKLRMFVVQEPVVAASCLIAGVGLFLPAVVRPILDSFEASKQVPQPALSDV 55

The following BLAST results are available for this feature:
BLAST of Carg26738-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022958795.11.4e-20100.00uncharacterized protein LOC111459960 [Cucurbita moschata] >XP_023547705.1 unchar... [more]
XP_023006679.11.8e-2098.18uncharacterized protein LOC111499335 [Cucurbita maxima] >XP_023006681.1 uncharac... [more]
XP_022959928.15.9e-1992.73uncharacterized protein LOC111460833 [Cucurbita moschata] >XP_022959929.1 unchar... [more]
XP_008459762.17.7e-1992.73PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo] >ADN34227.1 fiber... [more]
XP_004140520.17.7e-1994.55PREDICTED: uncharacterized protein LOC101213029 [Cucumis sativus] >KGN46491.1 hy... [more]
BLAST of Carg26738-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46540.17.2e-1981.82unknown protein[more]
BLAST of Carg26738-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg26738-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CAX6|A0A1S3CAX6_CUCME5.1e-1992.73uncharacterized protein LOC103498799 OS=Cucumis melo OX=3656 GN=LOC103498799 PE=... [more]
tr|A0A068UM29|A0A068UM29_COFCA5.1e-1992.73Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027698001 PE=4 ... [more]
tr|E5GCM8|E5GCM8_CUCME5.1e-1992.73Fiber protein fb11 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A0A0KFJ9|A0A0A0KFJ9_CUCSA5.1e-1994.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G103010 PE=4 SV=1[more]
tr|A0A2I4EG73|A0A2I4EG73_9ROSI2.2e-1785.45uncharacterized protein LOC108989287 OS=Juglans regia OX=51240 GN=LOC108989287 P... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg26738Carg26738gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg26738-RACarg26738-RA-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26738-RA.CDS.3Carg26738-RA.CDS.3CDS
Carg26738-RA.CDS.2Carg26738-RA.CDS.2CDS
Carg26738-RA.CDS.1Carg26738-RA.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26738-RA.five_prime_UTR.1Carg26738-RA.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg26738-RA.exon.3Carg26738-RA.exon.3exon
Carg26738-RA.exon.2Carg26738-RA.exon.2exon
Carg26738-RA.exon.1Carg26738-RA.exon.1exon


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36026:SF1SUBFAMILY NOT NAMEDcoord: 1..55
NoneNo IPR availablePANTHERPTHR36026FAMILY NOT NAMEDcoord: 1..55