Carg26357 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26357
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_237 : 255355 .. 255798 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCACCCAAACACTGCCATCGCCGCCGCTCTCCTGTACTTGATCCTCGCCGTCCTCCCCCTGCCGACAAGGACCGAAGACACCTGCCCATATCCCTGCTACCCTCCGCCCACCGGCCCCGCCACCGCTACTCCCACCACTCCATCTCCGCCGTCGCCAACAGGTTATGGCTCCTATTCTCCTCCGGCCTTCTACCCTCCGCCGGCTGCTACCTACCCATATAACACCCCGCCCTCCAACGGCAACAGCTTCGATGGCGTCACTCCACCGCCTCCGGACCCGATTCTGCCGTACTTCCCTTATTACTTCAAGAAGCCTCCTCATAAACCGGACGATGAATCCAGTGGCTCCGCCGTCGCAGGACGCAAATCGGAGGTCGGAATGATCGCCGGAACTTTGTTATTTATTACTCTCTCTCTTTCCTTCAATTTGATGTAA

mRNA sequence

ATGGCTTCCCACCCAAACACTGCCATCGCCGCCGCTCTCCTGTACTTGATCCTCGCCGTCCTCCCCCTGCCGACAAGGACCGAAGACACCTGCCCATATCCCTGCTACCCTCCGCCCACCGGCCCCGCCACCGCTACTCCCACCACTCCATCTCCGCCGTCGCCAACAGGTTATGGCTCCTATTCTCCTCCGGCCTTCTACCCTCCGCCGGCTGCTACCTACCCATATAACACCCCGCCCTCCAACGGCAACAGCTTCGATGGCGTCACTCCACCGCCTCCGGACCCGATTCTGCCGTACTTCCCTTATTACTTCAAGAAGCCTCCTCATAAACCGGACGATGAATCCAGTGGCTCCGCCGTCGCAGGACGCAAATCGGAGGTCGGAATGATCGCCGGAACTTTGTTATTTATTACTCTCTCTCTTTCCTTCAATTTGATGTAA

Coding sequence (CDS)

ATGGCTTCCCACCCAAACACTGCCATCGCCGCCGCTCTCCTGTACTTGATCCTCGCCGTCCTCCCCCTGCCGACAAGGACCGAAGACACCTGCCCATATCCCTGCTACCCTCCGCCCACCGGCCCCGCCACCGCTACTCCCACCACTCCATCTCCGCCGTCGCCAACAGGTTATGGCTCCTATTCTCCTCCGGCCTTCTACCCTCCGCCGGCTGCTACCTACCCATATAACACCCCGCCCTCCAACGGCAACAGCTTCGATGGCGTCACTCCACCGCCTCCGGACCCGATTCTGCCGTACTTCCCTTATTACTTCAAGAAGCCTCCTCATAAACCGGACGATGAATCCAGTGGCTCCGCCGTCGCAGGACGCAAATCGGAGGTCGGAATGATCGCCGGAACTTTGTTATTTATTACTCTCTCTCTTTCCTTCAATTTGATGTAA

Protein sequence

MASHPNTAIAAALLYLILAVLPLPTRTEDTCPYPCYPPPTGPATATPTTPSPPSPTGYGSYSPPAFYPPPAATYPYNTPPSNGNSFDGVTPPPPDPILPYFPYYFKKPPHKPDDESSGSAVAGRKSEVGMIAGTLLFITLSLSFNLM

Homology

[Close]

BLAST of Carg26357 vs. NCBI nr
Match: XP_022939261.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita moschata])

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-18
Identity = 144/147 (97.96%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MASHPNTAIAAALLYLILAVLPLPTRTEDTCPYPCYPXXXXXXXXXXXXXXXXXXXXXXX 60
           MASHPNTAIAAALL LILAVL LPTRTEDTCPYPCY XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASHPNTAIAAALLSLILAVLLLPTRTEDTCPYPCYXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXGNSFDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           XXXXXXXXXXXXXXXXXXXXXXGNSFDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXGNSFDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120

Query: 121 VAGRKSEVGMIAGTLLFITLSLSFNLM 148
           VAGRKSEVGMIAGTLLFITLSLSFNLM
Sbjct: 121 VAGRKSEVGMIAGTLLFITLSLSFNLM 147

[Close]

BLAST of Carg26357 vs. NCBI nr
Match: XP_023550920.1 (extensin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 2.9e-18
Identity = 139/144 (96.53%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MASHPNTAIAAALLYLILAVLPLPTRTEDTCPYPCYPXXXXXXXXXXXXXXXXXXXXXXX 60
           MASHPNTAIAAALL LILAVLP+PTR EDTCPYPCYP  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASHPNTAIAAALLSLILAVLPVPTRNEDTCPYPCYPPPXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXGNSFDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           XXXXXXXXXXXXXXXXXXXXXXGNSFDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXGNSFDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120

Query: 121 VAGRKSEVGMIAGTLLFITLSLSF 145
           VAGRKSEVGMIAGTLLFITLSLSF
Sbjct: 121 VAGRKSEVGMIAGTLLFITLSLSF 144

[Close]

BLAST of Carg26357 vs. NCBI nr
Match: XP_022993313.1 (leucine-rich repeat extensin-like protein 5 [Cucurbita maxima])

HSP 1 Score: 100.1 bits (248), Expect = 6.5e-18
Identity = 135/146 (92.47%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MASHPNTAIAAALLYLILAVLPLPTRTEDTCPYPCYPXXXXXXXXXXXXXXXXXXXXXXX 60
           MASHPNTAIAA LL  ILAVLPLPTRTEDTCPYPCYP    XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASHPNTAIAAVLLPFILAVLPLPTRTEDTCPYPCYPPPTGXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXGNSFDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA 120
           XXXXXXXXXXXXXXXXXXXXXXGNSFDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXGNSFDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSA 120

Query: 121 VAGRKSEVGMIAGTLLFITLSLSFNL 147
           +AGRKSEVGMIAGTLLFITLSLS +L
Sbjct: 121 IAGRKSEVGMIAGTLLFITLSLSLSL 146

[Close]

BLAST of Carg26357 vs. NCBI nr
Match: XP_022152321.1 (basic salivary proline-rich protein 1-like [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-04
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 1  MASHPNTAIAAALLYLILAVLPLPTRTEDTCPYPCYP 38
          MAS P TA+AA L  LILAVLP  T ++DTCPYPCYP
Sbjct: 1  MASPPITAVAAILFALILAVLPPATSSDDTCPYPCYP 37

The following BLAST results are available for this feature:

BLAST of Carg26357 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939261.1	1.0e-18	97.96	leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]	[more]
XP_023550920.1	2.9e-18	96.53	extensin-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993313.1	6.5e-18	92.47	leucine-rich repeat extensin-like protein 5 [Cucurbita maxima]	[more]
XP_022152321.1	6.9e-04	70.27	basic salivary proline-rich protein 1-like [Momordica charantia]	[more]

BLAST of Carg26357 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg26357 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26357 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26357-RA	Carg26357-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	PANTHER	PTHR37702	FAMILY NOT NAMED	coord: 5..138

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26357	Cla003910	Watermelon (97103) v1	carwmB0181
Carg26357	Csa5G576580	Cucumber (Chinese Long) v2	carcuB0211
Carg26357	MELO3C005324	Melon (DHL92) v3.5.1	carmeB0193
Carg26357	ClCG01G006070	Watermelon (Charleston Gray)	carwcgB0183
Carg26357	CSPI05G19780	Wild cucumber (PI 183967)	carcpiB0219
Carg26357	Cucsa.280540	Cucumber (Gy14) v1	carcgyB0230
Carg26357	CmaCh15G009430	Cucurbita maxima (Rimu)	carcmaB0263
Carg26357	CmaCh04G020910	Cucurbita maxima (Rimu)	carcmaB0264
Carg26357	CmoCh04G021930	Cucurbita moschata (Rifu)	carcmoB0271
Carg26357	Lsi09G006420	Bottle gourd (USVL1VR-Ls)	carlsiB169
Carg26357	Cp4.1LG13g03700	Cucurbita pepo (Zucchini)	carcpeB0274
Carg26357	CsGy5G019270	Cucumber (Gy14) v2	carcgybB0204
Carg26357	MELO3C005324.2	Melon (DHL92) v3.6.1	carmedB0197
Carg26357	CsaV3_5G028610	Cucumber (Chinese Long) v3	carcucB0217

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26357	Cucurbita moschata (Rifu)	carcmoB0270
Carg26357	Watermelon (97103) v2	carwmbB0195
Carg26357	Wax gourd	carwgoB0239