Carg26189 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26189
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_219 : 62331 .. 62675 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTGCAATGGAGAAGCTCAGCAACATGGGAAGTGTTGCCAAAAAGAAGCTCAAAATTTGTAGAGCCAAACTCGACGAGAAGGTGCAAAAAGCGTCGGCGAAGACAGCGGAGGAGAGAAAGATTGCGGAGGAGCGGAGGAAGGCGGCGGAGGCAGAGGCGAAGCGGGAGCTACACGAGGCGAAAGCCCGACATGCTGCTCAAAAGCTAAGAACTAGGCAGTCACATGTACTTGGCCACCGTTTACACCATCAGCCACCGGTGGAGGGGGGCAGCGCCGCCAATGTTCCCGCTTATCCTATAGCTAGTCCGGAGGGCTACTACCCTGGACATAGAATTTAA

mRNA sequence

ATGCAGTCTGCAATGGAGAAGCTCAGCAACATGGGAAGTGTTGCCAAAAAGAAGCTCAAAATTTGTAGAGCCAAACTCGACGAGAAGGTGCAAAAAGCGTCGGCGAAGACAGCGGAGGAGAGAAAGATTGCGGAGGAGCGGAGGAAGGCGGCGGAGGCAGAGGCGAAGCGGGAGCTACACGAGGCGAAAGCCCGACATGCTGCTCAAAAGCTAAGAACTAGGCAGTCACATGTACTTGGCCACCGTTTACACCATCAGCCACCGGTGGAGGGGGGCAGCGCCGCCAATGTTCCCGCTTATCCTATAGCTAGTCCGGAGGGCTACTACCCTGGACATAGAATTTAA

Coding sequence (CDS)

ATGCAGTCTGCAATGGAGAAGCTCAGCAACATGGGAAGTGTTGCCAAAAAGAAGCTCAAAATTTGTAGAGCCAAACTCGACGAGAAGGTGCAAAAAGCGTCGGCGAAGACAGCGGAGGAGAGAAAGATTGCGGAGGAGCGGAGGAAGGCGGCGGAGGCAGAGGCGAAGCGGGAGCTACACGAGGCGAAAGCCCGACATGCTGCTCAAAAGCTAAGAACTAGGCAGTCACATGTACTTGGCCACCGTTTACACCATCAGCCACCGGTGGAGGGGGGCAGCGCCGCCAATGTTCCCGCTTATCCTATAGCTAGTCCGGAGGGCTACTACCCTGGACATAGAATTTAA

Protein sequence

MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI

Homology

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BLAST of Carg26189 vs. NCBI nr
Match: XP_022923386.1 (late embryogenesis abundant protein 6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 5.5e-33
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60
           MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XXXXXXXXXXXRTRQSHV+GHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXXXXXXXXXXRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 114

[Close]

BLAST of Carg26189 vs. NCBI nr
Match: XP_022965230.1 (late embryogenesis abundant protein 6-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 146.0 bits (367), Expect = 8.0e-32
Identity = 105/114 (92.11%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60
           MQSAMEKLSNMGSVAKKKLKICRAKL+EKVQKASAKTAE  XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MQSAMEKLSNMGSVAKKKLKICRAKLNEKVQKASAKTAEERXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XXXXXX     RTRQSHVLGHRLHHQPPVE GSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXXXXXAAQKLRTRQSHVLGHRLHHQPPVEEGSAANVPAYPIASPEGYYPGHRI 114

[Close]

BLAST of Carg26189 vs. NCBI nr
Match: XP_023553167.1 (late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 8.0e-32
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60
           MQ+AMEKLSNMGSVAKKKLKICRAKLDE VQKAS KTAE  XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MQAAMEKLSNMGSVAKKKLKICRAKLDETVQKASVKTAEERXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XXXXXXXXXX RTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXXXXXXXXXLRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 114

[Close]

BLAST of Carg26189 vs. NCBI nr
Match: XP_022923387.1 (late embryogenesis abundant protein 6-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 143.3 bits (360), Expect = 5.2e-31
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 5   MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXX 64
           MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 65  XXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XXXXXXXRTRQSHV+GHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXXXXXXRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 110

[Close]

BLAST of Carg26189 vs. NCBI nr
Match: XP_022965231.1 (late embryogenesis abundant protein 6-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 7.4e-30
Identity = 100/110 (90.91%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 5   MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXX 64
           MEKLSNMGSVAKKKLKICRAKL+EKVQKASAKTAE   XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEKLSNMGSVAKKKLKICRAKLNEKVQKASAKTAEERKXXXXXXXXXXXXXXXXXXXXXX 60

Query: 65  XXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XX     RTRQSHVLGHRLHHQPPVE GSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXAAQKLRTRQSHVLGHRLHHQPPVEEGSAANVPAYPIASPEGYYPGHRI 110

[Close]

BLAST of Carg26189 vs. TrEMBL
Match: tr|A0A1S3BKB4|A0A1S3BKB4_CUCME (uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 88/121 (72.73%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60
           MQSAMEKLSNMGSVAK+KLKICRAKLDEKV+KAS KTAE      XXXXXXXXXXXXXXX
Sbjct: 1   MQSAMEKLSNMGSVAKEKLKICRAKLDEKVEKASVKTAEERKIVEXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXRTRQSHVL-GHRLHHQPPVEGGSA------ANVPAYPIASPEGYYPGHR 115
           XXX        R R+SHVL G  LHH  PVEGG+A       NVPAYPIASPEGYYPGH+
Sbjct: 61  XXXARHAAQKLRNRKSHVLGGGHLHHHSPVEGGAATHLGGETNVPAYPIASPEGYYPGHK 120

[Close]

BLAST of Carg26189 vs. TrEMBL
Match: tr|A0A0A0L1A9|A0A0A0L1A9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 39/92 (42.39%), Postives = 46/92 (50.00%), Query Frame = 0


Query: 29  KVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRQSHVLGHRLHHQPP 88
           +V+KAS KTAE                                R R+SHVLG   HHQ P
Sbjct: 5   QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSP 64

Query: 89  VEGGS------AANVPAYPIASPEGYYPGHRI 115
           +EGG+      A NVPAYPI SPEGY+PGH+I
Sbjct: 65  MEGGAATHLGGATNVPAYPITSPEGYHPGHKI 96

The following BLAST results are available for this feature:

BLAST of Carg26189 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923386.1	5.5e-33	99.12	late embryogenesis abundant protein 6-like isoform X1 [Cucurbita moschata]	[more]
XP_022965230.1	8.0e-32	92.11	late embryogenesis abundant protein 6-like isoform X1 [Cucurbita maxima]	[more]
XP_023553167.1	8.0e-32	94.74	late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923387.1	5.2e-31	99.09	late embryogenesis abundant protein 6-like isoform X2 [Cucurbita moschata]	[more]
XP_022965231.1	7.4e-30	90.91	late embryogenesis abundant protein 6-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg26189 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg26189 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26189 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKB4\|A0A1S3BKB4_CUCME	2.0e-23	72.73	uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=...	[more]
tr\|A0A0A0L1A9\|A0A0A0L1A9_CUCSA	1.4e-08	42.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009793	embryo development ending in seed dormancy

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26189-RA	Carg26189-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..68
None	No IPR available	PANTHER	PTHR33493:SF6	LEA D113 HOMOLOGUE TYPE2-RELATED	coord: 1..101
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 1..70 e-value: 5.3E-20 score: 71.8
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 1..101
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PRODOM	PD005538		coord: 1..34 e-value: 2.0E-4 score: 100.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26189	Cla008793	Watermelon (97103) v1	carwmB0497
Carg26189	Csa3G011770	Cucumber (Chinese Long) v2	carcuB0526
Carg26189	ClCG10G001740	Watermelon (Charleston Gray)	carwcgB0487
Carg26189	CSPI03G01800	Wild cucumber (PI 183967)	carcpiB0534
Carg26189	CmaCh16G011490	Cucurbita maxima (Rimu)	carcmaB0697
Carg26189	CmoCh16G012000	Cucurbita moschata (Rifu)	carcmoB0677
Carg26189	Lsi07G012130	Bottle gourd (USVL1VR-Ls)	carlsiB451
Carg26189	Cp4.1LG14g09480	Cucurbita pepo (Zucchini)	carcpeB0702
Carg26189	CsGy3G001680	Cucumber (Gy14) v2	carcgybB0503
Carg26189	MELO3C032260.2	Melon (DHL92) v3.6.1	carmedB0508
Carg26189	CsaV3_3G001850	Cucumber (Chinese Long) v3	carcucB0532
Carg26189	Cla97C10G186370	Watermelon (97103) v2	carwmbB0524
Carg26189	Bhi11G000124	Wax gourd	carwgoB0606

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26189	Cucumber (Gy14) v1	carcgyB0573
Carg26189	Melon (DHL92) v3.5.1	carmeB0503