Lsi07G012130 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G012130
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionLate embryogenesis abundant protein, putative
Locationchr07 : 17698024 .. 17698311 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTTACAGGTGGAGAAAGCGTCGGTGAAGACGGTGGAGGAGAGGAAGATTGTGGAGGAGAGAAGGAAGGCAGCGACGGCGGAGGCAAAGCGGGAGCTACATGAGGCGAAAGCTAGACATGCTGCTCAAAAGCTAAGGAATAGGAAATCACAAGTACTTGGCGGCCATTTACACTATCATCAGCCTCCGATGGAAGGTGCCGCCGCCACACAGCTCGGCGGAGCAAATGTTCCGGCTTATCCTATAGCCACCCCGGAGGGGTACTATCCCGGACATAAAATTTAA

mRNA sequence

ATGTATTTACAGGTGGAGAAAGCGTCGGTGAAGACGGTGGAGGAGAGGAAGATTGTGGAGGAGAGAAGGAAGGCAGCGACGGCGGAGGCAAAGCGGGAGCTACATGAGGCGAAAGCTAGACATGCTGCTCAAAAGCTAAGGAATAGGAAATCACAAGTACTTGGCGGCCATTTACACTATCATCAGCCTCCGATGGAAGGTGCCGCCGCCACACAGCTCGGCGGAGCAAATGTTCCGGCTTATCCTATAGCCACCCCGGAGGGGTACTATCCCGGACATAAAATTTAA

Coding sequence (CDS)

ATGTATTTACAGGTGGAGAAAGCGTCGGTGAAGACGGTGGAGGAGAGGAAGATTGTGGAGGAGAGAAGGAAGGCAGCGACGGCGGAGGCAAAGCGGGAGCTACATGAGGCGAAAGCTAGACATGCTGCTCAAAAGCTAAGGAATAGGAAATCACAAGTACTTGGCGGCCATTTACACTATCATCAGCCTCCGATGGAAGGTGCCGCCGCCACACAGCTCGGCGGAGCAAATGTTCCGGCTTATCCTATAGCCACCCCGGAGGGGTACTATCCCGGACATAAAATTTAA

Protein sequence

MYLQVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGGHLHYHQPPMEGAAATQLGGANVPAYPIATPEGYYPGHKI
Homology
[Close]
BLAST of Lsi07G012130 vs. TrEMBL
Match: A0A0A0L1A9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011770 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-32
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 1 

Query: 4  QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGGHLHYHQP 63
          QVEKASVKT EERKI+EERRKAATAEAKRELHEAKARHAAQKLRNRKS VLGGH H HQ 
Sbjct: 5  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRH-HQS 64

Query: 64 PMEGAAATQLGGA-NVPAYPIATPEGYYPGHKI 96
          PMEG AAT LGGA NVPAYPI +PEGY+PGHKI
Sbjct: 65 PMEGGAATHLGGATNVPAYPITSPEGYHPGHKI 96

[Close]
BLAST of Lsi07G012130 vs. TrEMBL
Match: A0A061G381_THECC (Late embryogenesis abundant protein, putative OS=Theobroma cacao GN=TCM_015736 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.0e-08
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 4   QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGGHLHYHQP 63
           Q+EKA+ +T EE+++  E +KA  A AK EL + K RHA ++LR+++ Q L G+ + H P
Sbjct: 30  QMEKAAARTAEEKRLATESKKAKEARAKMELQQDKVRHAKERLRSKQPQYLHGYGYDHAP 89

Query: 64  PMEG-------AAATQLGGANVPAYP-IATPEGYYPGHKI 96
           P+ G        +A  +GG NVP YP +  P+ +  GHK+
Sbjct: 90  PVSGTHGHQTVGSAAPVGGTNVPTYPLVGHPQPH--GHKM 127

[Close]
BLAST of Lsi07G012130 vs. TrEMBL
Match: A0A067JYG5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19500 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-07
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1 

Query: 4   QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGG--HLHYH 63
           +VE+AS +T E+++I +ERRKA  A+AK +LH+ KA+HAA+KL  R++  L G  H ++H
Sbjct: 29  KVERASARTHEQKQIAKERRKAKEAQAKMKLHQEKAKHAAEKLSGRRAHHLSGATHTNHH 88

Query: 64  QP----PMEGAAATQ-------LGGANVPAYPIATPEGYYPGHK 95
            P    P+ G  A Q       + G  VP YP+    G+ PG+K
Sbjct: 89  YPTTVDPVVGTHAHQPVGTTGTMAGTTVPTYPLG---GHPPGYK 129

[Close]
BLAST of Lsi07G012130 vs. TrEMBL
Match: K4C6U1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1 

Query: 4   QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGGHLHYHQP 63
           + EKA  +T EE++I EE RKA  AEAK ELH+AKARHAA+ L++++S ++G H H H  
Sbjct: 29  KAEKAVARTREEKRIAEEVRKAKEAEAKMELHQAKARHAAETLQSKQSHLIGRHGHGHHH 88

Query: 64  PMEGAAATQLGGANVPAYPIATPE---GYYP 92
              G     + G+ VP      P    G YP
Sbjct: 89  HAVGGQQNPVVGSTVPTTGTVAPTYPLGGYP 119

[Close]
BLAST of Lsi07G012130 vs. TrEMBL
Match: Q9XES9_SOYBN (Seed maturation protein OS=Glycine max GN=PM29 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 42/93 (45.16%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 4   QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGGHLHYHQP 63
           + EKA+ +T EER I  ER KA  AEAK ELHEAKARHAA+KL   +S    G  H H P
Sbjct: 29  KTEKATARTEEERVITHERAKAKEAEAKMELHEAKARHAAEKLSTNQSHY--GLHHGHNP 88

Query: 64  PMEGAAATQL-GGANVPAYPIATPEGYYPGHKI 96
           P+ G   T    G + P   +  P   YP + +
Sbjct: 89  PLVGTTETHYQQGHHQPLGAVPMPGAIYPSYPL 119

[Close]
BLAST of Lsi07G012130 vs. NCBI nr
Match: gi|700200642|gb|KGN55775.1| (hypothetical protein Csa_3G011770 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-32
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 1 

Query: 4  QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGGHLHYHQP 63
          QVEKASVKT EERKI+EERRKAATAEAKRELHEAKARHAAQKLRNRKS VLGGH H HQ 
Sbjct: 5  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRH-HQS 64

Query: 64 PMEGAAATQLGGA-NVPAYPIATPEGYYPGHKI 96
          PMEG AAT LGGA NVPAYPI +PEGY+PGHKI
Sbjct: 65 PMEGGAATHLGGATNVPAYPITSPEGYHPGHKI 96

[Close]
BLAST of Lsi07G012130 vs. NCBI nr
Match: gi|449462055|ref|XP_004148757.1| (PREDICTED: uncharacterized protein LOC101209639 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 7.6e-32
Identity = 80/93 (86.02%), Postives = 84/93 (90.32%), Query Frame = 1 

Query: 4   QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGGHLHYHQP 63
           +VEKASVKT EERKI+EERRKAATAEAKRELHEAKARHAAQKLRNRKS VLGGH H HQ 
Sbjct: 29  KVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRH-HQS 88

Query: 64  PMEGAAATQLGGA-NVPAYPIATPEGYYPGHKI 96
           PMEG AAT LGGA NVPAYPI +PEGY+PGHKI
Sbjct: 89  PMEGGAATHLGGATNVPAYPITSPEGYHPGHKI 120

[Close]
BLAST of Lsi07G012130 vs. NCBI nr
Match: gi|659095669|ref|XP_008448704.1| (PREDICTED: uncharacterized protein LOC103490795 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-31
Identity = 81/94 (86.17%), Postives = 85/94 (90.43%), Query Frame = 1 

Query: 4   QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVL-GGHLHYHQ 63
           +VEKASVKT EERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKS VL GGHLH+H 
Sbjct: 29  KVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGGHLHHHS 88

Query: 64  PPMEGAAATQLGG-ANVPAYPIATPEGYYPGHKI 96
            P+EG AAT LGG  NVPAYPIA+PEGYYPGHKI
Sbjct: 89  -PVEGGAATHLGGETNVPAYPIASPEGYYPGHKI 121

[Close]
BLAST of Lsi07G012130 vs. NCBI nr
Match: gi|698521521|ref|XP_009757567.1| (PREDICTED: 18 kDa seed maturation protein-like [Nicotiana sylvestris])

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-08
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 1 

Query: 4   QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGGHLHYHQP 63
           + EKA+ +T EE+ I EERRKA  AEAK ELH+AKARHAA+KL+ +++  LG   H+H P
Sbjct: 29  KAEKAAARTKEEKTIAEERRKAKEAEAKMELHQAKARHAAEKLQAKQAHHLGIGGHHHIP 88

Query: 64  PMEG--------AAATQLGGANVPAYPIATPEGYYPGH 94
           P  G               G   PAYP+    GY P H
Sbjct: 89  PTVGGQGHHDPVGTTIPTTGTVAPAYPLG---GYPPSH 123

[Close]
BLAST of Lsi07G012130 vs. NCBI nr
Match: gi|590675730|ref|XP_007039530.1| (Late embryogenesis abundant protein, putative [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 1.0e-07
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1 

Query: 4   QVEKASVKTVEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRKSQVLGGHLHYHQP 63
           Q+EKA+ +T EE+++  E +KA  A AK EL + K RHA ++LR+++ Q L G+ + H P
Sbjct: 30  QMEKAAARTAEEKRLATESKKAKEARAKMELQQDKVRHAKERLRSKQPQYLHGYGYDHAP 89

Query: 64  PMEG-------AAATQLGGANVPAYP-IATPEGYYPGHKI 96
           P+ G        +A  +GG NVP YP +  P+ +  GHK+
Sbjct: 90  PVSGTHGHQTVGSAAPVGGTNVPTYPLVGHPQPH--GHKM 127

The following BLAST results are available for this feature:
BLAST of Lsi07G012130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G012130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1A9_CUCSA1.8e-3287.10Uncharacterized protein OS=Cucumis sativus GN=Csa_3G011770 PE=4 SV=1[more]
A0A061G381_THECC7.0e-0840.00Late embryogenesis abundant protein, putative OS=Theobroma cacao GN=TCM_015736 P... [more]
A0A067JYG5_JATCU3.5e-0741.35Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19500 PE=4 SV=1[more]
K4C6U1_SOLLC1.0e-0643.96Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
Q9XES9_SOYBN1.0e-0645.16Seed maturation protein OS=Glycine max GN=PM29 PE=2 SV=1[more]
BLAST of Lsi07G012130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G012130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700200642|gb|KGN55775.1|2.6e-3287.10hypothetical protein Csa_3G011770 [Cucumis sativus][more]
gi|449462055|ref|XP_004148757.1|7.6e-3286.02PREDICTED: uncharacterized protein LOC101209639 [Cucumis sativus][more]
gi|659095669|ref|XP_008448704.1|2.9e-3186.17PREDICTED: uncharacterized protein LOC103490795 [Cucumis melo][more]
gi|698521521|ref|XP_009757567.1|3.4e-0845.92PREDICTED: 18 kDa seed maturation protein-like [Nicotiana sylvestris][more]
gi|590675730|ref|XP_007039530.1|1.0e-0740.00Late embryogenesis abundant protein, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009790 embryo development
biological_process GO:0008150 biological_process
biological_process GO:0009793 embryo development ending in seed dormancy
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G012130.1Lsi07G012130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 18..38
scor
NoneNo IPR availablePANTHERPTHR33493FAMILY NOT NAMEDcoord: 6..86
score: 6.1
NoneNo IPR availablePANTHERPTHR33493:SF6LEA D113 HOMOLOGUE TYPE2-RELATEDcoord: 6..86
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G012130Csa3G011770Cucumber (Chinese Long) v2culsiB228
Lsi07G012130CSPI03G01800Wild cucumber (PI 183967)cpilsiB227
Lsi07G012130CmaCh16G011490Cucurbita maxima (Rimu)cmalsiB324
Lsi07G012130CmoCh16G012000Cucurbita moschata (Rifu)cmolsiB313
Lsi07G012130Cla008793Watermelon (97103) v1lsiwmB429
Lsi07G012130ClCG10G001740Watermelon (Charleston Gray)lsiwcgB389
Lsi07G012130MELO3C032260.2Melon (DHL92) v3.6.1lsimedB462
Lsi07G012130Cla97C10G186370Watermelon (97103) v2lsiwmbB395
Lsi07G012130Bhi11G000124Wax gourdlsiwgoB539
Lsi07G012130Cp4.1LG14g09480Cucurbita pepo (Zucchini)cpelsiB183
Lsi07G012130CsGy3G001680Cucumber (Gy14) v2cgyblsiB217
Lsi07G012130Carg26189Silver-seed gourdcarlsiB451
Lsi07G012130CsaV3_3G001850Cucumber (Chinese Long) v3cuclsiB250
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G012130Cucumber (Gy14) v1cgylsiB423
Lsi07G012130Cucumber (Gy14) v1cgylsiB510
Lsi07G012130Cucumber (Gy14) v1cgylsiB530
Lsi07G012130Cucurbita maxima (Rimu)cmalsiB259
Lsi07G012130Cucurbita maxima (Rimu)cmalsiB591
Lsi07G012130Cucurbita maxima (Rimu)cmalsiB775
Lsi07G012130Cucurbita moschata (Rifu)cmolsiB574
Lsi07G012130Cucurbita moschata (Rifu)cmolsiB766
Lsi07G012130Cucurbita pepo (Zucchini)cpelsiB630
Lsi07G012130Wild cucumber (PI 183967)cpilsiB228
Lsi07G012130Wild cucumber (PI 183967)cpilsiB231
Lsi07G012130Cucumber (Chinese Long) v2culsiB229
Lsi07G012130Cucumber (Chinese Long) v2culsiB232
Lsi07G012130Melon (DHL92) v3.5.1lsimeB439
Lsi07G012130Melon (DHL92) v3.5.1lsimeB445
Lsi07G012130Melon (DHL92) v3.5.1lsimeB446
Lsi07G012130Watermelon (Charleston Gray)lsiwcgB385
Lsi07G012130Watermelon (Charleston Gray)lsiwcgB401
Lsi07G012130Watermelon (97103) v1lsiwmB424
Lsi07G012130Watermelon (97103) v1lsiwmB450
Lsi07G012130Cucumber (Gy14) v2cgyblsiB218
Lsi07G012130Melon (DHL92) v3.6.1lsimedB458
Lsi07G012130Silver-seed gourdcarlsiB721
Lsi07G012130Cucumber (Chinese Long) v3cuclsiB251
Lsi07G012130Watermelon (97103) v2lsiwmbB418