Bhi11G000124 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000124
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr11 : 3281462 .. 3281749 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCGCAGGTAGAGAAAGCATCAGTGAAGACGAGGGAGGAGAGGAAGATTGCGGAGGAGAGAAGGAAGGCGGCGACAGCGGAGGCGAAGCGGGAGCTACACGAGGCCAAAGCCAGACATGCTGCTCAAAAGCTGAGGAGTAAGAAGTCACATGTACTTGGCGGCCATTTACACCATCACCCACCTATGGAGGGCGCCGCCGCCACAAATCTCGGCGCAGCAAATGTTCCGGCGGCTTACCCTATCCCCACCACGGAGGGGTACTATCCCGGACATAAAATTTAA

mRNA sequence

ATGGATGCGCAGGTAGAGAAAGCATCAGTGAAGACGAGGGAGGAGAGGAAGATTGCGGAGGAGAGAAGGAAGGCGGCGACAGCGGAGGCGAAGCGGGAGCTACACGAGGCCAAAGCCAGACATGCTGCTCAAAAGCTGAGGAGTAAGAAGTCACATGTACTTGGCGGCCATTTACACCATCACCCACCTATGGAGGGCGCCGCCGCCACAAATCTCGGCGCAGCAAATGTTCCGGCGGCTTACCCTATCCCCACCACGGAGGGGTACTATCCCGGACATAAAATTTAA

Coding sequence (CDS)

ATGGATGCGCAGGTAGAGAAAGCATCAGTGAAGACGAGGGAGGAGAGGAAGATTGCGGAGGAGAGAAGGAAGGCGGCGACAGCGGAGGCGAAGCGGGAGCTACACGAGGCCAAAGCCAGACATGCTGCTCAAAAGCTGAGGAGTAAGAAGTCACATGTACTTGGCGGCCATTTACACCATCACCCACCTATGGAGGGCGCCGCCGCCACAAATCTCGGCGCAGCAAATGTTCCGGCGGCTTACCCTATCCCCACCACGGAGGGGTACTATCCCGGACATAAAATTTAA

Protein sequence

MDAQVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKKSHVLGGHLHHHPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI

Homology

[Close]

BLAST of Bhi11G000124 vs. TrEMBL
Match: tr|A0A1S3BKB4|A0A1S3BKB4_CUCME (uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.3e-19
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEXXXXXXXXXXXXXXXXXXXXHAAQKLRSKKSHVL-GGHLH 60
           +D +VEKASVKT EERKI EXXXXXXXXXXXXXXXXXX  HAAQKLR++KSHVL GGHLH
Sbjct: 26  LDEKVEKASVKTAEERKIVEXXXXXXXXXXXXXXXXXXARHAAQKLRNRKSHVLGGGHLH 85

Query: 61  HHPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
           HH P+EG AAT+LG      AYPI + EGYYPGHKI
Sbjct: 86  HHSPVEGGAATHLGGETNVPAYPIASPEGYYPGHKI 121

[Close]

BLAST of Bhi11G000124 vs. TrEMBL
Match: tr|A0A0A0L1A9|A0A0A0L1A9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 54/92 (58.70%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 4  QVEKASVKTREERKIAEXXXXXXXXXXXXXXXXXXXXHAAQKLRSKKSHVLGGHLHHHPP 63
          QVEKASVKT EERKI E                    HAAQKLR++KSHVLGGH HH  P
Sbjct: 5  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSP 64

Query: 64 MEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
          MEG AAT+LG A    AYPI + EGY+PGHKI
Sbjct: 65 MEGGAATHLGGATNVPAYPITSPEGYHPGHKI 96

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: XP_004148757.1 (PREDICTED: uncharacterized protein LOC101209639 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 8.4e-19
Identity = 54/95 (56.84%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEXXXXXXXXXXXXXXXXXXXXHAAQKLRSKKSHVLGGHLHH 60
           +D +VEKASVKT EERKI E                    HAAQKLR++KSHVLGGH HH
Sbjct: 26  LDEKVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHH 85

Query: 61  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
             PMEG AAT+LG A    AYPI + EGY+PGHKI
Sbjct: 86  QSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI 120

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: XP_008448704.1 (PREDICTED: uncharacterized protein LOC103490795 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEXXXXXXXXXXXXXXXXXXXXHAAQKLRSKKSHVL-GGHLH 60
           +D +VEKASVKT EERKI EXXXXXXXXXXXXXXXXXX  HAAQKLR++KSHVL GGHLH
Sbjct: 26  LDEKVEKASVKTAEERKIVEXXXXXXXXXXXXXXXXXXARHAAQKLRNRKSHVLGGGHLH 85

Query: 61  HHPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
           HH P+EG AAT+LG      AYPI + EGYYPGHKI
Sbjct: 86  HHSPVEGGAATHLGGETNVPAYPIASPEGYYPGHKI 121

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: KGN55775.1 (hypothetical protein Csa_3G011770 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-18
Identity = 54/92 (58.70%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 4  QVEKASVKTREERKIAEXXXXXXXXXXXXXXXXXXXXHAAQKLRSKKSHVLGGHLHHHPP 63
          QVEKASVKT EERKI E                    HAAQKLR++KSHVLGGH HH  P
Sbjct: 5  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSP 64

Query: 64 MEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
          MEG AAT+LG A    AYPI + EGY+PGHKI
Sbjct: 65 MEGGAATHLGGATNVPAYPITSPEGYHPGHKI 96

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: XP_022965231.1 (late embryogenesis abundant protein 6-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 64/95 (67.37%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEXXXXXXXXXXXXXXXXXXXXHAAQKLRSKKSHVLGGHLHH 60
           ++ +V+KAS KT EERK   XXXXXXXXXXXXXXXXXXXX AAQKLR+++SHVLG  LHH
Sbjct: 22  LNEKVQKASAKTAEERKXXXXXXXXXXXXXXXXXXXXXXXXAAQKLRTRQSHVLGHRLHH 81

Query: 61  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
            PP+E  +     AANVP AYPI + EGYYPGH+I
Sbjct: 82  QPPVEEGS-----AANVP-AYPIASPEGYYPGHRI 110

[Close]

BLAST of Bhi11G000124 vs. NCBI nr
Match: XP_022965230.1 (late embryogenesis abundant protein 6-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 72.4 bits (176), Expect = 9.3e-10
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1   MDAQVEKASVKTREERKIAEXXXXXXXXXXXXXXXXXXXXHAAQKLRSKKSHVLGGHLHH 60
           ++ +V+KAS KT EER    XXXXXXXXXXXXXXXXXXXX AAQKLR+++SHVLG  LHH
Sbjct: 26  LNEKVQKASAKTAEERXXXXXXXXXXXXXXXXXXXXXXXXXAAQKLRTRQSHVLGHRLHH 85

Query: 61  HPPMEGAAATNLGAANVPAAYPIPTTEGYYPGHKI 96
            PP+E  +     AANVP AYPI + EGYYPGH+I
Sbjct: 86  QPPVEEGS-----AANVP-AYPIASPEGYYPGHRI 114

The following BLAST results are available for this feature:

BLAST of Bhi11G000124 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G000124 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G000124 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKB4\|A0A1S3BKB4_CUCME	7.3e-19	76.04	uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=...	[more]
tr\|A0A0A0L1A9\|A0A0A0L1A9_CUCSA	1.2e-18	58.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=4 SV=1	[more]

BLAST of Bhi11G000124 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148757.1	8.4e-19	56.84	PREDICTED: uncharacterized protein LOC101209639 [Cucumis sativus]	[more]
XP_008448704.1	1.1e-18	76.04	PREDICTED: uncharacterized protein LOC103490795 [Cucumis melo]	[more]
KGN55775.1	1.9e-18	58.70	hypothetical protein Csa_3G011770 [Cucumis sativus]	[more]
XP_022965231.1	1.9e-10	67.37	late embryogenesis abundant protein 6-like isoform X2 [Cucurbita maxima]	[more]
XP_022965230.1	9.3e-10	66.32	late embryogenesis abundant protein 6-like isoform X1 [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009793	embryo development ending in seed dormancy

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0008150	biological_process
biological_process	GO:0009790	embryo development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000124	Bhi11M000124	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR33493:SF6	LEA D113 HOMOLOGUE TYPE2-RELATED	coord: 2..91
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 4..45 e-value: 2.0E-6 score: 28.3
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 2..91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi11G000124	Csa3G011770	Cucumber (Chinese Long) v2	cuwgoB237
Bhi11G000124	ClCG10G001740	Watermelon (Charleston Gray)	wcgwgoB095
Bhi11G000124	CSPI03G01800	Wild cucumber (PI 183967)	cpiwgoB239
Bhi11G000124	CmaCh16G011490	Cucurbita maxima (Rimu)	cmawgoB0413
Bhi11G000124	CmoCh16G012000	Cucurbita moschata (Rifu)	cmowgoB0409
Bhi11G000124	Lsi07G012130	Bottle gourd (USVL1VR-Ls)	lsiwgoB539
Bhi11G000124	Cp4.1LG14g09480	Cucurbita pepo (Zucchini)	cpewgoB0269
Bhi11G000124	CsGy3G001680	Cucumber (Gy14) v2	cgybwgoB227
Bhi11G000124	MELO3C032260.2	Melon (DHL92) v3.6.1	medwgoB508
Bhi11G000124	Carg26189	Silver-seed gourd	carwgoB0606
Bhi11G000124	CsaV3_3G001850	Cucumber (Chinese Long) v3	cucwgoB242
Bhi11G000124	Cla008793	Watermelon (97103) v1	wgowmB010
Bhi11G000124	Cla97C10G186370	Watermelon (97103) v2	wgowmbB017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G000124	Cucumber (Gy14) v1	cgywgoB622
Bhi11G000124	Cucumber (Gy14) v1	cgywgoB642
Bhi11G000124	Cucumber (Gy14) v2	cgybwgoB232
Bhi11G000124	Cucurbita maxima (Rimu)	cmawgoB0297
Bhi11G000124	Cucurbita maxima (Rimu)	cmawgoB0708
Bhi11G000124	Cucurbita maxima (Rimu)	cmawgoB0977
Bhi11G000124	Cucurbita moschata (Rifu)	cmowgoB0701
Bhi11G000124	Cucurbita moschata (Rifu)	cmowgoB0973
Bhi11G000124	Cucurbita pepo (Zucchini)	cpewgoB0908
Bhi11G000124	Wild cucumber (PI 183967)	cpiwgoB244
Bhi11G000124	Cucumber (Chinese Long) v3	cucwgoB246
Bhi11G000124	Cucumber (Chinese Long) v2	cuwgoB242
Bhi11G000124	Melon (DHL92) v3.6.1	medwgoB379
Bhi11G000124	Melon (DHL92) v3.5.1	mewgoB378
Bhi11G000124	Melon (DHL92) v3.5.1	mewgoB498
Bhi11G000124	Melon (DHL92) v3.5.1	mewgoB513
Bhi11G000124	Watermelon (Charleston Gray)	wcgwgoB013
Bhi11G000124	Watermelon (Charleston Gray)	wcgwgoB411
Bhi11G000124	Watermelon (97103) v2	wgowmbB041
Bhi11G000124	Watermelon (97103) v2	wgowmbB051
Bhi11G000124	Watermelon (97103) v1	wgowmB004
Bhi11G000124	Watermelon (97103) v1	wgowmB046
Bhi11G000124	Silver-seed gourd	carwgoB0909