Carg26189-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26189-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_219 : 62331 .. 62675 (+)
Sequence length	345

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTGCAATGGAGAAGCTCAGCAACATGGGAAGTGTTGCCAAAAAGAAGCTCAAAATTTGTAGAGCCAAACTCGACGAGAAGGTGCAAAAAGCGTCGGCGAAGACAGCGGAGGAGAGAAAGATTGCGGAGGAGCGGAGGAAGGCGGCGGAGGCAGAGGCGAAGCGGGAGCTACACGAGGCGAAAGCCCGACATGCTGCTCAAAAGCTAAGAACTAGGCAGTCACATGTACTTGGCCACCGTTTACACCATCAGCCACCGGTGGAGGGGGGCAGCGCCGCCAATGTTCCCGCTTATCCTATAGCTAGTCCGGAGGGCTACTACCCTGGACATAGAATTTAA

mRNA sequence

ATGCAGTCTGCAATGGAGAAGCTCAGCAACATGGGAAGTGTTGCCAAAAAGAAGCTCAAAATTTGTAGAGCCAAACTCGACGAGAAGGTGCAAAAAGCGTCGGCGAAGACAGCGGAGGAGAGAAAGATTGCGGAGGAGCGGAGGAAGGCGGCGGAGGCAGAGGCGAAGCGGGAGCTACACGAGGCGAAAGCCCGACATGCTGCTCAAAAGCTAAGAACTAGGCAGTCACATGTACTTGGCCACCGTTTACACCATCAGCCACCGGTGGAGGGGGGCAGCGCCGCCAATGTTCCCGCTTATCCTATAGCTAGTCCGGAGGGCTACTACCCTGGACATAGAATTTAA

Coding sequence (CDS)

ATGCAGTCTGCAATGGAGAAGCTCAGCAACATGGGAAGTGTTGCCAAAAAGAAGCTCAAAATTTGTAGAGCCAAACTCGACGAGAAGGTGCAAAAAGCGTCGGCGAAGACAGCGGAGGAGAGAAAGATTGCGGAGGAGCGGAGGAAGGCGGCGGAGGCAGAGGCGAAGCGGGAGCTACACGAGGCGAAAGCCCGACATGCTGCTCAAAAGCTAAGAACTAGGCAGTCACATGTACTTGGCCACCGTTTACACCATCAGCCACCGGTGGAGGGGGGCAGCGCCGCCAATGTTCCCGCTTATCCTATAGCTAGTCCGGAGGGCTACTACCCTGGACATAGAATTTAA

Protein sequence

MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI

Homology

[Close]

BLAST of Carg26189-RA vs. NCBI nr
Match: XP_022923386.1 (late embryogenesis abundant protein 6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 5.5e-33
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60
           MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XXXXXXXXXXXRTRQSHV+GHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXXXXXXXXXXRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 114

[Close]

BLAST of Carg26189-RA vs. NCBI nr
Match: XP_022965230.1 (late embryogenesis abundant protein 6-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 146.0 bits (367), Expect = 8.0e-32
Identity = 105/114 (92.11%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60
           MQSAMEKLSNMGSVAKKKLKICRAKL+EKVQKASAKTAE  XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MQSAMEKLSNMGSVAKKKLKICRAKLNEKVQKASAKTAEERXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XXXXXX     RTRQSHVLGHRLHHQPPVE GSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXXXXXAAQKLRTRQSHVLGHRLHHQPPVEEGSAANVPAYPIASPEGYYPGHRI 114

[Close]

BLAST of Carg26189-RA vs. NCBI nr
Match: XP_023553167.1 (late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 8.0e-32
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60
           MQ+AMEKLSNMGSVAKKKLKICRAKLDE VQKAS KTAE  XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MQAAMEKLSNMGSVAKKKLKICRAKLDETVQKASVKTAEERXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XXXXXXXXXX RTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXXXXXXXXXLRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 114

[Close]

BLAST of Carg26189-RA vs. NCBI nr
Match: XP_022923387.1 (late embryogenesis abundant protein 6-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 143.3 bits (360), Expect = 5.2e-31
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 5   MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXX 64
           MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 65  XXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XXXXXXXRTRQSHV+GHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXXXXXXRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 110

[Close]

BLAST of Carg26189-RA vs. NCBI nr
Match: XP_022965231.1 (late embryogenesis abundant protein 6-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 7.4e-30
Identity = 100/110 (90.91%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 5   MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXX 64
           MEKLSNMGSVAKKKLKICRAKL+EKVQKASAKTAE   XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MEKLSNMGSVAKKKLKICRAKLNEKVQKASAKTAEERKXXXXXXXXXXXXXXXXXXXXXX 60

Query: 65  XXXXXXXRTRQSHVLGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI 115
           XX     RTRQSHVLGHRLHHQPPVE GSAANVPAYPIASPEGYYPGHRI
Sbjct: 61  XXAAQKLRTRQSHVLGHRLHHQPPVEEGSAANVPAYPIASPEGYYPGHRI 110

[Close]

BLAST of Carg26189-RA vs. TrEMBL
Match: tr|A0A1S3BKB4|A0A1S3BKB4_CUCME (uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 88/121 (72.73%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MQSAMEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEXXXXXXXXXXXXXXXXXXXXX 60
           MQSAMEKLSNMGSVAK+KLKICRAKLDEKV+KAS KTAE      XXXXXXXXXXXXXXX
Sbjct: 1   MQSAMEKLSNMGSVAKEKLKICRAKLDEKVEKASVKTAEERKIVEXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXRTRQSHVL-GHRLHHQPPVEGGSA------ANVPAYPIASPEGYYPGHR 115
           XXX        R R+SHVL G  LHH  PVEGG+A       NVPAYPIASPEGYYPGH+
Sbjct: 61  XXXARHAAQKLRNRKSHVLGGGHLHHHSPVEGGAATHLGGETNVPAYPIASPEGYYPGHK 120

[Close]

BLAST of Carg26189-RA vs. TrEMBL
Match: tr|A0A0A0L1A9|A0A0A0L1A9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 39/92 (42.39%), Postives = 46/92 (50.00%), Query Frame = 0


Query: 29  KVQKASAKTAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRQSHVLGHRLHHQPP 88
           +V+KAS KTAE                                R R+SHVLG   HHQ P
Sbjct: 5   QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSP 64

Query: 89  VEGGS------AANVPAYPIASPEGYYPGHRI 115
           +EGG+      A NVPAYPI SPEGY+PGH+I
Sbjct: 65  MEGGAATHLGGATNVPAYPITSPEGYHPGHKI 96

The following BLAST results are available for this feature:

BLAST of Carg26189-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923386.1	5.5e-33	99.12	late embryogenesis abundant protein 6-like isoform X1 [Cucurbita moschata]	[more]
XP_022965230.1	8.0e-32	92.11	late embryogenesis abundant protein 6-like isoform X1 [Cucurbita maxima]	[more]
XP_023553167.1	8.0e-32	94.74	late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923387.1	5.2e-31	99.09	late embryogenesis abundant protein 6-like isoform X2 [Cucurbita moschata]	[more]
XP_022965231.1	7.4e-30	90.91	late embryogenesis abundant protein 6-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg26189-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg26189-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26189-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKB4\|A0A1S3BKB4_CUCME	2.0e-23	72.73	uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=...	[more]
tr\|A0A0A0L1A9\|A0A0A0L1A9_CUCSA	1.4e-08	42.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0009793	embryo development ending in seed dormancy

Vocabulary: **INTERPRO**
Term	Definition
IPR005513	LEA_1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg26189	Carg26189	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26189-RA.exon.1	Carg26189-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg26189-RA.CDS.1	Carg26189-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg26189-RA	Carg26189-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..68
None	No IPR available	PANTHER	PTHR33493:SF6	LEA D113 HOMOLOGUE TYPE2-RELATED	coord: 1..101
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 1..70 e-value: 5.3E-20 score: 71.8
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	FAMILY NOT NAMED	coord: 1..101
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PRODOM	PD005538		coord: 1..34 e-value: 2.0E-4 score: 100.0