Carg25542 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25542
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	INO80 complex subunit D-like
Location	Cucurbita_argyrosperma_scaffold_302 : 115389 .. 117514 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAATCTCCTCCTGCTCCCCCACATCCTATGGTTATTGATGGGGCGAATCATGATCTAGCTCTAGCCTCTTGTGAGTTTTTTACTCGTCGAGAAGTACTCGAGCGTCGGTCCCGGAGAGTGAAACAACTTTGTCGAGTATATAGGGAACTGTACTGGGCTTTAATGGAGGAACTCAAGCGCAAGTACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAACGGAAAGCTAGGATTAGGTTCTGTGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCGATGGCATTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGGTTTGCATTCTATATCAATTATTTTCGCTGCTTAGTAATACTATGAGTTTTCTACTTAATAAGCAATAGCCATAAATATAGACTCGTCTAGTATTGATATCATTACGATGATTTATAAGTATCTTGAGTTTCTTCTTCTCTTTGGACTGTCTTAAGATATAATTTTGCTAGAGCTCGTCCGAGTAGATCCTAAGGTTAAAGGCTGTATAAAAGCTTTTCTAATGCTGAAGTCTCCCCAAATTCCTATTGTAGAATGTAGCACCATTTCCAATCCTCTTAGTTAAAGAGCAATGGTTATCATCTATCTACTACTTGAATTTACCAAGTGAAAACCATGTGGTAAGAAACCAACCAAGCTTATTACAATATTTACAGCAAATTTGTTGCCCCAAGGCCCCTATAGGCTGTTTTTTGTGTCCCAATCCCAAATTATGAGGGCAATGTAAGTGAGCTGAATCTAATTAATGAAATGCAGCCTCCCTTAGGATCTGCTCTATTACGGCCCAAGCCTACCGCTAGCCGATATTGTCCTCTTTGAGCTTTCCCTTTAGGCTTCCCCTCAAGGTTTTTGAAACGCATCTGTGAGGAGGTTTCCATACCCTTGTAAAGAATGCTTCATTATCCTCCTCAACCGATGTGGGATTTCACATGCTCCTTCCCAAAGAACTCTCGAATATTTGTAGTGATCCTTGTCATTCCCTCTGTATGTTTAATGATTTTTTTTATAATTGGAAGGTAGTCAACATGGTTGAGCTGAATTAGATGGTCACACCTTTTTGATTGCATTGATCCAAAGTTGATGTCCGCACACTTTGGTTAAGCTTTTATTTTTCATTTGGGGTCTTTTGTATTTGTATCCTTCCCTGGAATTAGAAGCAATGTACATTGACATTCGGTATAATGGGTTGGCATAGATGTGTTGTGTTGAGGAAACTATGTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTCGTTAACAAGAAATTCGCTTTCATTTGCAGTATGCAGTCCGGACCGCTTCTATGTTCAAAGCCTGTTTTAAGATCTACTGTTCCTTGCTACTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTAGAGATTTAAGAAAGGCAGGTCTTAACGTCTCGTCGACTAGTAAACTTCGTCCTGATTTCCATGTATTAGTAGCTGAATGCGTTCGCCAGATACAAGTCAAAAGAAGGGCGGCGAGAAAGGCCACTGCTGTTAAAATTGAAAGCAACTGAGAAGGTGAAGACTAGTCGTTAGGCCCCTCAGTTTGAATAAGAACATGTTGCAGTTGGTACATGTGTATTCAATCCAACCCGAAACCCCCAATGGAAGAATTGTTGATAAAACCAATTTTCGTGTACGATCCAATCCCTTGTTCCTTCCTCTCCCTCGCTGCACATTTGTTGTGTAATATTCGAGCAAAAGGTCGATGCAATGTGCAGATGATTAGCAGATTGCAGGGATGTACATTCCTTCTCTTGTTTTATGAAAGGACCGATTTAGTGTCAGCTTCCTTCTCTACAGGGTTTGATGGTATCATTTTTCCCAACTTGCAATAAAGGATTATAATCAATAGCTCGAGACGAAAATGATTGTTCGTAGAAGAAAGCCTACAGTTCGGTAATTTCGTTTT

mRNA sequence

ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAATCTCCTCCTGCTCCCCCACATCCTATGGTTATTGATGGGGCGAATCATGATCTAGCTCTAGCCTCTTGTGAGTTTTTTACTCGTCGAGAAGTACTCGAGCGTCGGTCCCGGAGAGTGAAACAACTTTGTCGAGTATATAGGGAACTGTACTGGGCTTTAATGGAGGAACTCAAGCGCAAGTACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAACGGAAAGCTAGGATTAGGTTCTGTGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCGATGGCATTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGTATGCAGTCCGGACCGCTTCTATGTTCAAAGCCTGTTTTAAGATCTACTGTTCCTTGCTACTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTAGAGATTTAAGAAAGGCAGGTCTTAACGTCTCGTCGACTAGTAAACTTCGTCCTGATTTCCATGTATTAGTAGCTGAATGCGTTCGCCAGATACAAGTCAAAAGAAGGGCGGCGAGAAAGGCCACTGCTGTTAAAATTGAAAGCAACTGAGAAGGTGAAGACTAGTCGTTAGGCCCCTCAGTTTGAATAAGAACATGTTGCAGTTGGTACATGTGTATTCAATCCAACCCGAAACCCCCAATGGAAGAATTGTTGATAAAACCAATTTTCGTGTACGATCCAATCCCTTGTTCCTTCCTCTCCCTCGCTGCACATTTGTTGTGTAATATTCGAGCAAAAGGTCGATGCAATGTGCAGATGATTAGCAGATTGCAGGGATGTACATTCCTTCTCTTGTTTTATGAAAGGACCGATTTAGTGTCAGCTTCCTTCTCTACAGGGTTTGATGGTATCATTTTTCCCAACTTGCAATAAAGGATTATAATCAATAGCTCGAGACGAAAATGATTGTTCGTAGAAGAAAGCCTACAGTTCGGTAATTTCGTTTT

Coding sequence (CDS)

ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAATCTCCTCCTGCTCCCCCACATCCTATGGTTATTGATGGGGCGAATCATGATCTAGCTCTAGCCTCTTGTGAGTTTTTTACTCGTCGAGAAGTACTCGAGCGTCGGTCCCGGAGAGTGAAACAACTTTGTCGAGTATATAGGGAACTGTACTGGGCTTTAATGGAGGAACTCAAGCGCAAGTACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAACGGAAAGCTAGGATTAGGTTCTGTGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCGATGGCATTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGTATGCAGTCCGGACCGCTTCTATGTTCAAAGCCTGTTTTAAGATCTACTGTTCCTTGCTACTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTAGAGATTTAAGAAAGGCAGGTCTTAACGTCTCGTCGACTAGTAAACTTCGTCCTGATTTCCATGTATTAGTAGCTGAATGCGTTCGCCAGATACAAGTCAAAAGAAGGGCGGCGAGAAAGGCCACTGCTGTTAAAATTGAAAGCAACTGA

Protein sequence

MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRRCDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIESN

Homology

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BLAST of Carg25542 vs. NCBI nr
Match: XP_022953677.1 (INO80 complex subunit D-like [Cucurbita moschata] >XP_022991632.1 INO80 complex subunit D-like [Cucurbita maxima] >XP_023548640.1 INO80 complex subunit D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456.1 bits (1172), Expect = 7.6e-125
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL
Sbjct: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR
Sbjct: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
           PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES
Sbjct: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

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BLAST of Carg25542 vs. NCBI nr
Match: XP_008447279.1 (PREDICTED: INO80 complex subunit D-like isoform X1 [Cucumis melo])

HSP 1 Score: 396.4 bits (1017), Expect = 7.1e-107
Identity = 197/241 (81.74%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MA+SNSPGSFQ PP  P P++IDGA+ D ALAS    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MADSNSPGSFQPPPVTPFPILIDGADRDRALASSMVCSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+              GKSPFKEDEKEAEGIGDYPEGIGENGKLGLGS TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSSTGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

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BLAST of Carg25542 vs. NCBI nr
Match: XP_004139660.1 (PREDICTED: INO80 complex subunit D [Cucumis sativus] >KGN44580.1 hypothetical protein Csa_7G337070 [Cucumis sativus])

HSP 1 Score: 394.4 bits (1012), Expect = 2.7e-106
Identity = 196/241 (81.33%), Postives = 209/241 (86.72%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQ PP  P P++IDGA+ D ALA+    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MAESNSPGSFQPPPVTPLPILIDGADRDRALATSMICSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+              GKSPFKEDEKEAEGIGDYPEGIGENGKLGL S TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLASATGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

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BLAST of Carg25542 vs. NCBI nr
Match: XP_022150569.1 (INO80 complex subunit D-like isoform X1 [Momordica charantia] >XP_022150579.1 INO80 complex subunit D-like isoform X1 [Momordica charantia] >XP_022150584.1 INO80 complex subunit D-like isoform X1 [Momordica charantia])

HSP 1 Score: 374.0 bits (959), Expect = 3.8e-100
Identity = 185/241 (76.76%), Postives = 201/241 (83.40%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQ         VIDG +HD+ALAS +F TR+E+L RRSRRVKQL R+Y+  
Sbjct: 1   MAESNSPGSFQPXXXXXXXXVIDGTDHDVALASSKFITRKELLVRRSRRVKQLIRIYKAF 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YWALM              GKSPFKEDEKEAEGIGDYPEGIGENGK G+GS  GSD+IRR
Sbjct: 61  YWALMEDFKRKFREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKFGIGSAAGSDDIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCK KAMA+TKYCHAHILSD KQRLYKGCTFVIKSM SGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKVKAMAMTKYCHAHILSDSKQRLYKGCTFVIKSMPSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
           PGHLQKGEKCLARDLRKAGLN+SSTSKLRP+ HVL++E VRQIQ+KRRA RKATAVK E+
Sbjct: 181 PGHLQKGEKCLARDLRKAGLNISSTSKLRPELHVLLSEYVRQIQLKRRAMRKATAVKTET 240

Query: 241 N 242
           N
Sbjct: 241 N 241

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BLAST of Carg25542 vs. NCBI nr
Match: PON42812.1 (KAT8 regulatory NSL complex subunit [Trema orientalis])

HSP 1 Score: 280.0 bits (715), Expect = 7.5e-72
Identity = 148/234 (63.25%), Postives = 167/234 (71.37%), Query Frame = 0


Query: 7   PGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMX 66
           P    S P+P  PM IDG++ D ALA+ E+ +RREVLERRSRRVKQL R+YR  YWALM 
Sbjct: 5   PPESPSSPSPSSPMTIDGSDRDSALANSEWLSRREVLERRSRRVKQLARLYRHHYWALME 64

Query: 67  XXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGS-DEIRRCDVTG 126
                        GKSPFKEDE      G   +G GENG+LG GS  G+ D+IRRC V  
Sbjct: 65  DLKAKHREYYWTYGKSPFKEDEAAPPANG--TDGYGENGRLGFGSGGGNGDDIRRCQVAN 124

Query: 127 CKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQ 186
           CKAKAMALTK+CHAHILSD  Q+LYKGCT VIKSMQSGPLLC KP+LR+TVP  CP H Q
Sbjct: 125 CKAKAMALTKFCHAHILSDPHQKLYKGCTHVIKSMQSGPLLCCKPILRTTVPSLCPTHFQ 184

Query: 187 KGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
           K EKCL RDLRKAGLNVSS S L P  HV+VAE V QIQ +RRA RKA+  K+E
Sbjct: 185 KNEKCLIRDLRKAGLNVSSLSNLAPKLHVIVAEYVCQIQTRRRAIRKASVAKVE 236

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BLAST of Carg25542 vs. TAIR10
Match: AT2G31600.1 (unknown protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-40
Identity = 101/224 (45.09%), Postives = 123/224 (54.91%), Query Frame = 0


Query: 28  DLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMXXXXXXXXXXXXXXGKSPFKED 87
           D  LA     TR E+L+RRS  +KQL + YR+ YWALM              G S FK++
Sbjct: 69  DEILARSSHITRSELLKRRSHNLKQLAKCYRDNYWALMEDVKAQHRDYWWKYGISQFKDE 128

Query: 88  EKEA--------EGI----GDYPEGIGENGKLGLGSVTGSDEIRRCD--VTGCKAKAMAL 147
             ++        EG     GD  EG G+N     G  +       C   + GCKAKAMAL
Sbjct: 129 NNQSNKRRRLGQEGDIGDGGDAVEGSGDNVTNNDGVKSDQYANSNCGSCMYGCKAKAMAL 188

Query: 148 TKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLAR 207
           TKYC  HIL D KQ+LY GCT VIK   +GPLLC KP L STVP  C  H QK +K +A+
Sbjct: 189 TKYCQLHILKDSKQKLYTGCTNVIKRAPAGPLLCGKPTLASTVPALCNIHFQKAQKHVAK 248

Query: 208 DLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVK 238
            L+ AG NVSSTSK  P  HV+VA  V  IQ KR+  +K   +K
Sbjct: 249 ALKDAGHNVSSTSKPPPKLHVIVAAFVHHIQAKRKNPQKECKLK 292

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BLAST of Carg25542 vs. TAIR10
Match: AT3G53860.1 (unknown protein)

HSP 1 Score: 158.3 bits (399), Expect = 5.9e-39
Identity = 95/211 (45.02%), Postives = 118/211 (55.92%), Query Frame = 0


Query: 28  DLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMXXXXXXXXXXXXXXGKSPFKED 87
           D  LAS    TR E+L RR+  +KQL + Y+  YWALM              G S FK++
Sbjct: 65  DEILASSSHLTRPELLRRRADNLKQLAKCYKNHYWALMEDLKAQHRDYWCKYGVSQFKDE 124

Query: 88  EKEAEGIGDY-PEGIGENGKLGLGSVTGSDEIRRCDVTGCKAKAMALTKYCHAHILSDKK 147
           + ++       PEG G+ G  G      +     C + GCKAKAMALTKYC  HIL D K
Sbjct: 125 QNQSNKRRRLDPEGSGDKGNDGDQYANSNSGF--C-MYGCKAKAMALTKYCQLHILKDSK 184

Query: 148 QRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLARDLRKAGLNVSSTS 207
           Q+LY GCT VI    +GPLLC KP L STVP  C  H QK +K +A+ L+ AG NVSSTS
Sbjct: 185 QKLYTGCTNVINRSPAGPLLCGKPTLASTVPVLCNVHYQKAQKNVAKALKDAGHNVSSTS 244

Query: 208 KLRPDFHVLVAECVRQIQVKRRAARKATAVK 238
           K  P  HV+VA  V  IQ +R+   K   +K
Sbjct: 245 KPPPKLHVIVAAFVHHIQAQRKNPHKEGKLK 272

[Close]

BLAST of Carg25542 vs. TAIR10
Match: AT1G05860.1 (unknown protein)

HSP 1 Score: 151.8 bits (382), Expect = 5.6e-37
Identity = 99/237 (41.77%), Postives = 124/237 (52.32%), Query Frame = 0


Query: 10  FQSP--PAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMXX 69
           F++P  P+      I  A  D  L +    TR E+L RRS  +KQL R YR+ YWALM  
Sbjct: 37  FRNPNNPSTSSNSPISMAVEDQILGNSNHLTRPELLRRRSHNLKQLSRCYRDHYWALMED 96

Query: 70  XXXXXXXXXXXXGKSPFKED------EKEAEG-IGDYPEGIGENGKLGLGSVTGSDEIRR 129
                       G SPFK++       ++ EG  GD  EG           V   + +  
Sbjct: 97  LKAQHRYYSWNYGVSPFKDENYHQNKRRKVEGQTGDEIEGSXXXXXXXXXGVKAGNCV-A 156

Query: 130 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 189
           C  +GCK+KAMALT YC  HIL DKKQ+LY  CT+V K  QS  + C KP L STVP  C
Sbjct: 157 CG-SGCKSKAMALTNYCQLHILMDKKQKLYTSCTYVNKRAQSKAITCPKPTLASTVPALC 216

Query: 190 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVK 238
             H QK +K +AR L+ AG NVSS S+  P  H +VA  V  IQ KR+  RK   +K
Sbjct: 217 NVHFQKAQKDVARALKDAGHNVSSASRPPPKLHDIVAAFVHHIQAKRKDPRKEGKLK 271

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BLAST of Carg25542 vs. Swiss-Prot
Match: sp|Q54J07|IN80D_DICDI (INO80 complex subunit D OS=Dictyostelium discoideum OX=44689 GN=DDB_G0288447 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           C    CK K M L+KYC++HIL DK Q+L+  CT+ + + +     C  P+L+  +P  C
Sbjct: 531 CLSVNCKVKPMLLSKYCYSHILQDKDQKLFHECTYQLSANKK----CGYPILKVQIPTLC 590

Query: 181 PGHL 185
             HL
Sbjct: 591 REHL 590

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BLAST of Carg25542 vs. TrEMBL
Match: tr|A0A1S3BH19|A0A1S3BH19_CUCME (INO80 complex subunit D-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489752 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 4.7e-107
Identity = 197/241 (81.74%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MA+SNSPGSFQ PP  P P++IDGA+ D ALAS    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MADSNSPGSFQPPPVTPFPILIDGADRDRALASSMVCSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+              GKSPFKEDEKEAEGIGDYPEGIGENGKLGLGS TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSSTGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

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BLAST of Carg25542 vs. TrEMBL
Match: tr|A0A0A0K4I2|A0A0A0K4I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337070 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.8e-106
Identity = 196/241 (81.33%), Postives = 209/241 (86.72%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQ PP  P P++IDGA+ D ALA+    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MAESNSPGSFQPPPVTPLPILIDGADRDRALATSMICSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+              GKSPFKEDEKEAEGIGDYPEGIGENGKLGL S TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLASATGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of Carg25542 vs. TrEMBL
Match: tr|A0A2P5B201|A0A2P5B201_9ROSA (KAT8 regulatory NSL complex subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_335020 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 4.9e-72
Identity = 148/234 (63.25%), Postives = 167/234 (71.37%), Query Frame = 0


Query: 7   PGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMX 66
           P    S P+P  PM IDG++ D ALA+ E+ +RREVLERRSRRVKQL R+YR  YWALM 
Sbjct: 5   PPESPSSPSPSSPMTIDGSDRDSALANSEWLSRREVLERRSRRVKQLARLYRHHYWALME 64

Query: 67  XXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGS-DEIRRCDVTG 126
                        GKSPFKEDE      G   +G GENG+LG GS  G+ D+IRRC V  
Sbjct: 65  DLKAKHREYYWTYGKSPFKEDEAAPPANG--TDGYGENGRLGFGSGGGNGDDIRRCQVAN 124

Query: 127 CKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQ 186
           CKAKAMALTK+CHAHILSD  Q+LYKGCT VIKSMQSGPLLC KP+LR+TVP  CP H Q
Sbjct: 125 CKAKAMALTKFCHAHILSDPHQKLYKGCTHVIKSMQSGPLLCCKPILRTTVPSLCPTHFQ 184

Query: 187 KGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
           K EKCL RDLRKAGLNVSS S L P  HV+VAE V QIQ +RRA RKA+  K+E
Sbjct: 185 KNEKCLIRDLRKAGLNVSSLSNLAPKLHVIVAEYVCQIQTRRRAIRKASVAKVE 236

[Close]

BLAST of Carg25542 vs. TrEMBL
Match: tr|A0A2P5C305|A0A2P5C305_PARAD (KAT8 regulatory NSL complex subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_188680 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.3e-71
Identity = 147/234 (62.82%), Postives = 166/234 (70.94%), Query Frame = 0


Query: 7   PGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMX 66
           P    S P+   PM IDG++ D ALAS E+ +RREVLERRSRRVKQL R+YR  YWALM 
Sbjct: 5   PPESPSSPSXSSPMTIDGSDRDSALASSEWLSRREVLERRSRRVKQLARLYRHHYWALME 64

Query: 67  XXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGS-DEIRRCDVTG 126
                        GKSPFKEDE      G   +G GENG+LG GS  G+ D+I RC V  
Sbjct: 65  DLKAKHREYYWTYGKSPFKEDEAAPPANG--TDGYGENGRLGFGSGGGNGDDIGRCQVAN 124

Query: 127 CKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQ 186
           CKAKAMALT++CHAHILSD  Q+LYKGCT+VIKSMQSGPLLC KPVLR+TVP  CP H Q
Sbjct: 125 CKAKAMALTEFCHAHILSDPHQKLYKGCTYVIKSMQSGPLLCCKPVLRTTVPSLCPTHFQ 184

Query: 187 KGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
           K EKCL RDLRKAGLNVSS S L P  HV+VAE V QIQ +RRA RKA+  K+E
Sbjct: 185 KNEKCLIRDLRKAGLNVSSLSNLAPKLHVIVAEYVCQIQTRRRAIRKASVAKVE 236

[Close]

BLAST of Carg25542 vs. TrEMBL
Match: tr|W9SSR1|W9SSR1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011783 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.4e-68
Identity = 139/228 (60.96%), Postives = 160/228 (70.18%), Query Frame = 0


Query: 14  PAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMXXXXXXXX 73
           P+P  PM IDG++ D ALA   + +RREVLERR R  KQL RVYR  YWALM        
Sbjct: 30  PSPSSPMTIDGSDRDAALAKSAWLSRREVLERRCRLAKQLARVYRHHYWALMEDVKAKHR 89

Query: 74  XXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGK--LGLGSVTGSDEIRRCDVTGCKAKAM 133
                 GKSPFK+DE  A           ENGK  LGLG+  G D+I+RC VTGCK KAM
Sbjct: 90  DYYWTFGKSPFKDDETAAAA------ATAENGKLGLGLGNSGGGDDIKRCQVTGCKTKAM 149

Query: 134 ALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCL 193
           ALTK+CHAHIL+D +Q+LY+GC +VIKSMQSGPL C KP+LRST P  CP H QKGEKCL
Sbjct: 150 ALTKFCHAHILNDPQQKLYRGCQYVIKSMQSGPLKCCKPILRSTAPPLCPTHFQKGEKCL 209

Query: 194 ARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
            RDLRKAGLNVSS + L P FHV+VAE + QIQ KRRAARKA+  K+E
Sbjct: 210 IRDLRKAGLNVSSLTNLAPKFHVIVAEYICQIQSKRRAARKASVRKVE 251

The following BLAST results are available for this feature:

BLAST of Carg25542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953677.1	7.6e-125	100.00	INO80 complex subunit D-like [Cucurbita moschata] >XP_022991632.1 INO80 complex ...	[more]
XP_008447279.1	7.1e-107	81.74	PREDICTED: INO80 complex subunit D-like isoform X1 [Cucumis melo]	[more]
XP_004139660.1	2.7e-106	81.33	PREDICTED: INO80 complex subunit D [Cucumis sativus] >KGN44580.1 hypothetical pr...	[more]
XP_022150569.1	3.8e-100	76.76	INO80 complex subunit D-like isoform X1 [Momordica charantia] >XP_022150579.1 IN...	[more]
PON42812.1	7.5e-72	63.25	KAT8 regulatory NSL complex subunit [Trema orientalis]	[more]

BLAST of Carg25542 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31600.1	1.4e-40	45.09	unknown protein	[more]
AT3G53860.1	5.9e-39	45.02	unknown protein	[more]
AT1G05860.1	5.6e-37	41.77	unknown protein	[more]

BLAST of Carg25542 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54J07\|IN80D_DICDI	2.0e-07	39.06	INO80 complex subunit D OS=Dictyostelium discoideum OX=44689 GN=DDB_G0288447 PE=...	[more]

BLAST of Carg25542 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BH19\|A0A1S3BH19_CUCME	4.7e-107	81.74	INO80 complex subunit D-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489752 ...	[more]
tr\|A0A0A0K4I2\|A0A0A0K4I2_CUCSA	1.8e-106	81.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337070 PE=4 SV=1	[more]
tr\|A0A2P5B201\|A0A2P5B201_9ROSA	4.9e-72	63.25	KAT8 regulatory NSL complex subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_3...	[more]
tr\|A0A2P5C305\|A0A2P5C305_PARAD	9.3e-71	62.82	KAT8 regulatory NSL complex subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x...	[more]
tr\|W9SSR1\|W9SSR1_9ROSA	7.4e-68	60.96	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011783 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0000123	histone acetyltransferase complex

Vocabulary: **INTERPRO**
Term	Definition
IPR026316	NSL2
IPR025927	Potential_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000123	histone acetyltransferase complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25542-RA	Carg25542-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025927	Potential DNA-binding domain	PFAM	PF13891	zf-C3Hc3H	coord: 122..183 e-value: 3.6E-16 score: 59.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR13453:SF3	SUBFAMILY NOT NAMED	coord: 30..235
IPR026316	KAT8 regulatory NSL complex subunit 2	PANTHER	PTHR13453	UNCHARACTERIZED	coord: 30..235

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25542	Cla014968	Watermelon (97103) v1	carwmB0422
Carg25542	Csa7G337070	Cucumber (Chinese Long) v2	carcuB0458
Carg25542	MELO3C012775	Melon (DHL92) v3.5.1	carmeB0433
Carg25542	ClCG09G009140	Watermelon (Charleston Gray)	carwcgB0418
Carg25542	CSPI07G14060	Wild cucumber (PI 183967)	carcpiB0463
Carg25542	Cucsa.078410	Cucumber (Gy14) v1	carcgyB0492
Carg25542	CmaCh17G012430	Cucurbita maxima (Rimu)	carcmaB0591
Carg25542	CmoCh17G012220	Cucurbita moschata (Rifu)	carcmoB0576
Carg25542	Cp4.1LG12g11210	Cucurbita pepo (Zucchini)	carcpeB0597
Carg25542	CsGy7G012690	Cucumber (Gy14) v2	carcgybB0434
Carg25542	MELO3C012775.2	Melon (DHL92) v3.6.1	carmedB0435
Carg25542	CsaV3_7G025800	Cucumber (Chinese Long) v3	carcucB0459
Carg25542	Cla97C09G171950	Watermelon (97103) v2	carwmbB0449
Carg25542	Bhi09G001146	Wax gourd	carwgoB0511

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25542	Silver-seed gourd	carcarB094
Carg25542	Cucurbita maxima (Rimu)	carcmaB0592
Carg25542	Cucurbita moschata (Rifu)	carcmoB0577
Carg25542	Cucurbita pepo (Zucchini)	carcpeB0598
Carg25542	Bottle gourd (USVL1VR-Ls)	carlsiB386
Carg25542	Melon (DHL92) v3.5.1	carmeB0434
Carg25542	Melon (DHL92) v3.6.1	carmedB0436