Carg25542-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25542-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	INO80 complex subunit D-like
Location	Cucurbita_argyrosperma_scaffold_302 : 115389 .. 117514 (-)
Sequence length	1124

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAATCTCCTCCTGCTCCCCCACATCCTATGGTTATTGATGGGGCGAATCATGATCTAGCTCTAGCCTCTTGTGAGTTTTTTACTCGTCGAGAAGTACTCGAGCGTCGGTCCCGGAGAGTGAAACAACTTTGTCGAGTATATAGGGAACTGTACTGGGCTTTAATGGAGGAACTCAAGCGCAAGTACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAACGGAAAGCTAGGATTAGGTTCTGTGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCGATGGCATTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGGTTTGCATTCTATATCAATTATTTTCGCTGCTTAGTAATACTATGAGTTTTCTACTTAATAAGCAATAGCCATAAATATAGACTCGTCTAGTATTGATATCATTACGATGATTTATAAGTATCTTGAGTTTCTTCTTCTCTTTGGACTGTCTTAAGATATAATTTTGCTAGAGCTCGTCCGAGTAGATCCTAAGGTTAAAGGCTGTATAAAAGCTTTTCTAATGCTGAAGTCTCCCCAAATTCCTATTGTAGAATGTAGCACCATTTCCAATCCTCTTAGTTAAAGAGCAATGGTTATCATCTATCTACTACTTGAATTTACCAAGTGAAAACCATGTGGTAAGAAACCAACCAAGCTTATTACAATATTTACAGCAAATTTGTTGCCCCAAGGCCCCTATAGGCTGTTTTTTGTGTCCCAATCCCAAATTATGAGGGCAATGTAAGTGAGCTGAATCTAATTAATGAAATGCAGCCTCCCTTAGGATCTGCTCTATTACGGCCCAAGCCTACCGCTAGCCGATATTGTCCTCTTTGAGCTTTCCCTTTAGGCTTCCCCTCAAGGTTTTTGAAACGCATCTGTGAGGAGGTTTCCATACCCTTGTAAAGAATGCTTCATTATCCTCCTCAACCGATGTGGGATTTCACATGCTCCTTCCCAAAGAACTCTCGAATATTTGTAGTGATCCTTGTCATTCCCTCTGTATGTTTAATGATTTTTTTTATAATTGGAAGGTAGTCAACATGGTTGAGCTGAATTAGATGGTCACACCTTTTTGATTGCATTGATCCAAAGTTGATGTCCGCACACTTTGGTTAAGCTTTTATTTTTCATTTGGGGTCTTTTGTATTTGTATCCTTCCCTGGAATTAGAAGCAATGTACATTGACATTCGGTATAATGGGTTGGCATAGATGTGTTGTGTTGAGGAAACTATGTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTCGTTAACAAGAAATTCGCTTTCATTTGCAGTATGCAGTCCGGACCGCTTCTATGTTCAAAGCCTGTTTTAAGATCTACTGTTCCTTGCTACTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTAGAGATTTAAGAAAGGCAGGTCTTAACGTCTCGTCGACTAGTAAACTTCGTCCTGATTTCCATGTATTAGTAGCTGAATGCGTTCGCCAGATACAAGTCAAAAGAAGGGCGGCGAGAAAGGCCACTGCTGTTAAAATTGAAAGCAACTGAGAAGGTGAAGACTAGTCGTTAGGCCCCTCAGTTTGAATAAGAACATGTTGCAGTTGGTACATGTGTATTCAATCCAACCCGAAACCCCCAATGGAAGAATTGTTGATAAAACCAATTTTCGTGTACGATCCAATCCCTTGTTCCTTCCTCTCCCTCGCTGCACATTTGTTGTGTAATATTCGAGCAAAAGGTCGATGCAATGTGCAGATGATTAGCAGATTGCAGGGATGTACATTCCTTCTCTTGTTTTATGAAAGGACCGATTTAGTGTCAGCTTCCTTCTCTACAGGGTTTGATGGTATCATTTTTCCCAACTTGCAATAAAGGATTATAATCAATAGCTCGAGACGAAAATGATTGTTCGTAGAAGAAAGCCTACAGTTCGGTAATTTCGTTTT

mRNA sequence

ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAATCTCCTCCTGCTCCCCCACATCCTATGGTTATTGATGGGGCGAATCATGATCTAGCTCTAGCCTCTTGTGAGTTTTTTACTCGTCGAGAAGTACTCGAGCGTCGGTCCCGGAGAGTGAAACAACTTTGTCGAGTATATAGGGAACTGTACTGGGCTTTAATGGAGGAACTCAAGCGCAAGTACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAACGGAAAGCTAGGATTAGGTTCTGTGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCGATGGCATTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGTATGCAGTCCGGACCGCTTCTATGTTCAAAGCCTGTTTTAAGATCTACTGTTCCTTGCTACTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTAGAGATTTAAGAAAGGCAGGTCTTAACGTCTCGTCGACTAGTAAACTTCGTCCTGATTTCCATGTATTAGTAGCTGAATGCGTTCGCCAGATACAAGTCAAAAGAAGGGCGGCGAGAAAGGCCACTGCTGTTAAAATTGAAAGCAACTGAGAAGGTGAAGACTAGTCGTTAGGCCCCTCAGTTTGAATAAGAACATGTTGCAGTTGGTACATGTGTATTCAATCCAACCCGAAACCCCCAATGGAAGAATTGTTGATAAAACCAATTTTCGTGTACGATCCAATCCCTTGTTCCTTCCTCTCCCTCGCTGCACATTTGTTGTGTAATATTCGAGCAAAAGGTCGATGCAATGTGCAGATGATTAGCAGATTGCAGGGATGTACATTCCTTCTCTTGTTTTATGAAAGGACCGATTTAGTGTCAGCTTCCTTCTCTACAGGGTTTGATGGTATCATTTTTCCCAACTTGCAATAAAGGATTATAATCAATAGCTCGAGACGAAAATGATTGTTCGTAGAAGAAAGCCTACAGTTCGGTAATTTCGTTTT

Coding sequence (CDS)

ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAATCTCCTCCTGCTCCCCCACATCCTATGGTTATTGATGGGGCGAATCATGATCTAGCTCTAGCCTCTTGTGAGTTTTTTACTCGTCGAGAAGTACTCGAGCGTCGGTCCCGGAGAGTGAAACAACTTTGTCGAGTATATAGGGAACTGTACTGGGCTTTAATGGAGGAACTCAAGCGCAAGTACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAACGGAAAGCTAGGATTAGGTTCTGTGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCGATGGCATTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGTATGCAGTCCGGACCGCTTCTATGTTCAAAGCCTGTTTTAAGATCTACTGTTCCTTGCTACTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTAGAGATTTAAGAAAGGCAGGTCTTAACGTCTCGTCGACTAGTAAACTTCGTCCTGATTTCCATGTATTAGTAGCTGAATGCGTTCGCCAGATACAAGTCAAAAGAAGGGCGGCGAGAAAGGCCACTGCTGTTAAAATTGAAAGCAACTGA

Protein sequence

MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRRCDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIESN

Homology

[Close]

BLAST of Carg25542-RA vs. NCBI nr
Match: XP_022953677.1 (INO80 complex subunit D-like [Cucurbita moschata] >XP_022991632.1 INO80 complex subunit D-like [Cucurbita maxima] >XP_023548640.1 INO80 complex subunit D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456.1 bits (1172), Expect = 7.6e-125
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL
Sbjct: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR
Sbjct: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
           PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES
Sbjct: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of Carg25542-RA vs. NCBI nr
Match: XP_008447279.1 (PREDICTED: INO80 complex subunit D-like isoform X1 [Cucumis melo])

HSP 1 Score: 396.4 bits (1017), Expect = 7.1e-107
Identity = 197/241 (81.74%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MA+SNSPGSFQ PP  P P++IDGA+ D ALAS    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MADSNSPGSFQPPPVTPFPILIDGADRDRALASSMVCSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+              GKSPFKEDEKEAEGIGDYPEGIGENGKLGLGS TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSSTGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of Carg25542-RA vs. NCBI nr
Match: XP_004139660.1 (PREDICTED: INO80 complex subunit D [Cucumis sativus] >KGN44580.1 hypothetical protein Csa_7G337070 [Cucumis sativus])

HSP 1 Score: 394.4 bits (1012), Expect = 2.7e-106
Identity = 196/241 (81.33%), Postives = 209/241 (86.72%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQ PP  P P++IDGA+ D ALA+    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MAESNSPGSFQPPPVTPLPILIDGADRDRALATSMICSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+              GKSPFKEDEKEAEGIGDYPEGIGENGKLGL S TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLASATGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of Carg25542-RA vs. NCBI nr
Match: XP_022150569.1 (INO80 complex subunit D-like isoform X1 [Momordica charantia] >XP_022150579.1 INO80 complex subunit D-like isoform X1 [Momordica charantia] >XP_022150584.1 INO80 complex subunit D-like isoform X1 [Momordica charantia])

HSP 1 Score: 374.0 bits (959), Expect = 3.8e-100
Identity = 185/241 (76.76%), Postives = 201/241 (83.40%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQ         VIDG +HD+ALAS +F TR+E+L RRSRRVKQL R+Y+  
Sbjct: 1   MAESNSPGSFQPXXXXXXXXVIDGTDHDVALASSKFITRKELLVRRSRRVKQLIRIYKAF 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YWALM              GKSPFKEDEKEAEGIGDYPEGIGENGK G+GS  GSD+IRR
Sbjct: 61  YWALMEDFKRKFREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKFGIGSAAGSDDIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCK KAMA+TKYCHAHILSD KQRLYKGCTFVIKSM SGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKVKAMAMTKYCHAHILSDSKQRLYKGCTFVIKSMPSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
           PGHLQKGEKCLARDLRKAGLN+SSTSKLRP+ HVL++E VRQIQ+KRRA RKATAVK E+
Sbjct: 181 PGHLQKGEKCLARDLRKAGLNISSTSKLRPELHVLLSEYVRQIQLKRRAMRKATAVKTET 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of Carg25542-RA vs. NCBI nr
Match: PON42812.1 (KAT8 regulatory NSL complex subunit [Trema orientalis])

HSP 1 Score: 280.0 bits (715), Expect = 7.5e-72
Identity = 148/234 (63.25%), Postives = 167/234 (71.37%), Query Frame = 0


Query: 7   PGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMX 66
           P    S P+P  PM IDG++ D ALA+ E+ +RREVLERRSRRVKQL R+YR  YWALM 
Sbjct: 5   PPESPSSPSPSSPMTIDGSDRDSALANSEWLSRREVLERRSRRVKQLARLYRHHYWALME 64

Query: 67  XXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGS-DEIRRCDVTG 126
                        GKSPFKEDE      G   +G GENG+LG GS  G+ D+IRRC V  
Sbjct: 65  DLKAKHREYYWTYGKSPFKEDEAAPPANG--TDGYGENGRLGFGSGGGNGDDIRRCQVAN 124

Query: 127 CKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQ 186
           CKAKAMALTK+CHAHILSD  Q+LYKGCT VIKSMQSGPLLC KP+LR+TVP  CP H Q
Sbjct: 125 CKAKAMALTKFCHAHILSDPHQKLYKGCTHVIKSMQSGPLLCCKPILRTTVPSLCPTHFQ 184

Query: 187 KGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
           K EKCL RDLRKAGLNVSS S L P  HV+VAE V QIQ +RRA RKA+  K+E
Sbjct: 185 KNEKCLIRDLRKAGLNVSSLSNLAPKLHVIVAEYVCQIQTRRRAIRKASVAKVE 236

[Close]

BLAST of Carg25542-RA vs. TAIR10
Match: AT2G31600.1 (unknown protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-40
Identity = 101/224 (45.09%), Postives = 123/224 (54.91%), Query Frame = 0


Query: 28  DLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMXXXXXXXXXXXXXXGKSPFKED 87
           D  LA     TR E+L+RRS  +KQL + YR+ YWALM              G S FK++
Sbjct: 69  DEILARSSHITRSELLKRRSHNLKQLAKCYRDNYWALMEDVKAQHRDYWWKYGISQFKDE 128

Query: 88  EKEA--------EGI----GDYPEGIGENGKLGLGSVTGSDEIRRCD--VTGCKAKAMAL 147
             ++        EG     GD  EG G+N     G  +       C   + GCKAKAMAL
Sbjct: 129 NNQSNKRRRLGQEGDIGDGGDAVEGSGDNVTNNDGVKSDQYANSNCGSCMYGCKAKAMAL 188

Query: 148 TKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLAR 207
           TKYC  HIL D KQ+LY GCT VIK   +GPLLC KP L STVP  C  H QK +K +A+
Sbjct: 189 TKYCQLHILKDSKQKLYTGCTNVIKRAPAGPLLCGKPTLASTVPALCNIHFQKAQKHVAK 248

Query: 208 DLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVK 238
            L+ AG NVSSTSK  P  HV+VA  V  IQ KR+  +K   +K
Sbjct: 249 ALKDAGHNVSSTSKPPPKLHVIVAAFVHHIQAKRKNPQKECKLK 292

[Close]

BLAST of Carg25542-RA vs. TAIR10
Match: AT3G53860.1 (unknown protein)

HSP 1 Score: 158.3 bits (399), Expect = 5.9e-39
Identity = 95/211 (45.02%), Postives = 118/211 (55.92%), Query Frame = 0


Query: 28  DLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMXXXXXXXXXXXXXXGKSPFKED 87
           D  LAS    TR E+L RR+  +KQL + Y+  YWALM              G S FK++
Sbjct: 65  DEILASSSHLTRPELLRRRADNLKQLAKCYKNHYWALMEDLKAQHRDYWCKYGVSQFKDE 124

Query: 88  EKEAEGIGDY-PEGIGENGKLGLGSVTGSDEIRRCDVTGCKAKAMALTKYCHAHILSDKK 147
           + ++       PEG G+ G  G      +     C + GCKAKAMALTKYC  HIL D K
Sbjct: 125 QNQSNKRRRLDPEGSGDKGNDGDQYANSNSGF--C-MYGCKAKAMALTKYCQLHILKDSK 184

Query: 148 QRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLARDLRKAGLNVSSTS 207
           Q+LY GCT VI    +GPLLC KP L STVP  C  H QK +K +A+ L+ AG NVSSTS
Sbjct: 185 QKLYTGCTNVINRSPAGPLLCGKPTLASTVPVLCNVHYQKAQKNVAKALKDAGHNVSSTS 244

Query: 208 KLRPDFHVLVAECVRQIQVKRRAARKATAVK 238
           K  P  HV+VA  V  IQ +R+   K   +K
Sbjct: 245 KPPPKLHVIVAAFVHHIQAQRKNPHKEGKLK 272

[Close]

BLAST of Carg25542-RA vs. TAIR10
Match: AT1G05860.1 (unknown protein)

HSP 1 Score: 151.8 bits (382), Expect = 5.6e-37
Identity = 99/237 (41.77%), Postives = 124/237 (52.32%), Query Frame = 0


Query: 10  FQSP--PAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMXX 69
           F++P  P+      I  A  D  L +    TR E+L RRS  +KQL R YR+ YWALM  
Sbjct: 37  FRNPNNPSTSSNSPISMAVEDQILGNSNHLTRPELLRRRSHNLKQLSRCYRDHYWALMED 96

Query: 70  XXXXXXXXXXXXGKSPFKED------EKEAEG-IGDYPEGIGENGKLGLGSVTGSDEIRR 129
                       G SPFK++       ++ EG  GD  EG           V   + +  
Sbjct: 97  LKAQHRYYSWNYGVSPFKDENYHQNKRRKVEGQTGDEIEGSXXXXXXXXXGVKAGNCV-A 156

Query: 130 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 189
           C  +GCK+KAMALT YC  HIL DKKQ+LY  CT+V K  QS  + C KP L STVP  C
Sbjct: 157 CG-SGCKSKAMALTNYCQLHILMDKKQKLYTSCTYVNKRAQSKAITCPKPTLASTVPALC 216

Query: 190 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVK 238
             H QK +K +AR L+ AG NVSS S+  P  H +VA  V  IQ KR+  RK   +K
Sbjct: 217 NVHFQKAQKDVARALKDAGHNVSSASRPPPKLHDIVAAFVHHIQAKRKDPRKEGKLK 271

[Close]

BLAST of Carg25542-RA vs. Swiss-Prot
Match: sp|Q54J07|IN80D_DICDI (INO80 complex subunit D OS=Dictyostelium discoideum OX=44689 GN=DDB_G0288447 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           C    CK K M L+KYC++HIL DK Q+L+  CT+ + + +     C  P+L+  +P  C
Sbjct: 531 CLSVNCKVKPMLLSKYCYSHILQDKDQKLFHECTYQLSANKK----CGYPILKVQIPTLC 590

Query: 181 PGHL 185
             HL
Sbjct: 591 REHL 590

[Close]

BLAST of Carg25542-RA vs. TrEMBL
Match: tr|A0A1S3BH19|A0A1S3BH19_CUCME (INO80 complex subunit D-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489752 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 4.7e-107
Identity = 197/241 (81.74%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MA+SNSPGSFQ PP  P P++IDGA+ D ALAS    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MADSNSPGSFQPPPVTPFPILIDGADRDRALASSMVCSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+              GKSPFKEDEKEAEGIGDYPEGIGENGKLGLGS TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSSTGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of Carg25542-RA vs. TrEMBL
Match: tr|A0A0A0K4I2|A0A0A0K4I2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337070 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 1.8e-106
Identity = 196/241 (81.33%), Postives = 209/241 (86.72%), Query Frame = 0


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQ PP  P P++IDGA+ D ALA+    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MAESNSPGSFQPPPVTPLPILIDGADRDRALATSMICSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMXXXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+              GKSPFKEDEKEAEGIGDYPEGIGENGKLGL S TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLASATGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of Carg25542-RA vs. TrEMBL
Match: tr|A0A2P5B201|A0A2P5B201_9ROSA (KAT8 regulatory NSL complex subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_335020 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 4.9e-72
Identity = 148/234 (63.25%), Postives = 167/234 (71.37%), Query Frame = 0


Query: 7   PGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMX 66
           P    S P+P  PM IDG++ D ALA+ E+ +RREVLERRSRRVKQL R+YR  YWALM 
Sbjct: 5   PPESPSSPSPSSPMTIDGSDRDSALANSEWLSRREVLERRSRRVKQLARLYRHHYWALME 64

Query: 67  XXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGS-DEIRRCDVTG 126
                        GKSPFKEDE      G   +G GENG+LG GS  G+ D+IRRC V  
Sbjct: 65  DLKAKHREYYWTYGKSPFKEDEAAPPANG--TDGYGENGRLGFGSGGGNGDDIRRCQVAN 124

Query: 127 CKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQ 186
           CKAKAMALTK+CHAHILSD  Q+LYKGCT VIKSMQSGPLLC KP+LR+TVP  CP H Q
Sbjct: 125 CKAKAMALTKFCHAHILSDPHQKLYKGCTHVIKSMQSGPLLCCKPILRTTVPSLCPTHFQ 184

Query: 187 KGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
           K EKCL RDLRKAGLNVSS S L P  HV+VAE V QIQ +RRA RKA+  K+E
Sbjct: 185 KNEKCLIRDLRKAGLNVSSLSNLAPKLHVIVAEYVCQIQTRRRAIRKASVAKVE 236

[Close]

BLAST of Carg25542-RA vs. TrEMBL
Match: tr|A0A2P5C305|A0A2P5C305_PARAD (KAT8 regulatory NSL complex subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_188680 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.3e-71
Identity = 147/234 (62.82%), Postives = 166/234 (70.94%), Query Frame = 0


Query: 7   PGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMX 66
           P    S P+   PM IDG++ D ALAS E+ +RREVLERRSRRVKQL R+YR  YWALM 
Sbjct: 5   PPESPSSPSXSSPMTIDGSDRDSALASSEWLSRREVLERRSRRVKQLARLYRHHYWALME 64

Query: 67  XXXXXXXXXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGS-DEIRRCDVTG 126
                        GKSPFKEDE      G   +G GENG+LG GS  G+ D+I RC V  
Sbjct: 65  DLKAKHREYYWTYGKSPFKEDEAAPPANG--TDGYGENGRLGFGSGGGNGDDIGRCQVAN 124

Query: 127 CKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQ 186
           CKAKAMALT++CHAHILSD  Q+LYKGCT+VIKSMQSGPLLC KPVLR+TVP  CP H Q
Sbjct: 125 CKAKAMALTEFCHAHILSDPHQKLYKGCTYVIKSMQSGPLLCCKPVLRTTVPSLCPTHFQ 184

Query: 187 KGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
           K EKCL RDLRKAGLNVSS S L P  HV+VAE V QIQ +RRA RKA+  K+E
Sbjct: 185 KNEKCLIRDLRKAGLNVSSLSNLAPKLHVIVAEYVCQIQTRRRAIRKASVAKVE 236

[Close]

BLAST of Carg25542-RA vs. TrEMBL
Match: tr|W9SSR1|W9SSR1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011783 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.4e-68
Identity = 139/228 (60.96%), Postives = 160/228 (70.18%), Query Frame = 0


Query: 14  PAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMXXXXXXXX 73
           P+P  PM IDG++ D ALA   + +RREVLERR R  KQL RVYR  YWALM        
Sbjct: 30  PSPSSPMTIDGSDRDAALAKSAWLSRREVLERRCRLAKQLARVYRHHYWALMEDVKAKHR 89

Query: 74  XXXXXXGKSPFKEDEKEAEGIGDYPEGIGENGK--LGLGSVTGSDEIRRCDVTGCKAKAM 133
                 GKSPFK+DE  A           ENGK  LGLG+  G D+I+RC VTGCK KAM
Sbjct: 90  DYYWTFGKSPFKDDETAAAA------ATAENGKLGLGLGNSGGGDDIKRCQVTGCKTKAM 149

Query: 134 ALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCL 193
           ALTK+CHAHIL+D +Q+LY+GC +VIKSMQSGPL C KP+LRST P  CP H QKGEKCL
Sbjct: 150 ALTKFCHAHILNDPQQKLYRGCQYVIKSMQSGPLKCCKPILRSTAPPLCPTHFQKGEKCL 209

Query: 194 ARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
            RDLRKAGLNVSS + L P FHV+VAE + QIQ KRRAARKA+  K+E
Sbjct: 210 IRDLRKAGLNVSSLTNLAPKFHVIVAEYICQIQSKRRAARKASVRKVE 251

The following BLAST results are available for this feature:

BLAST of Carg25542-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953677.1	7.6e-125	100.00	INO80 complex subunit D-like [Cucurbita moschata] >XP_022991632.1 INO80 complex ...	[more]
XP_008447279.1	7.1e-107	81.74	PREDICTED: INO80 complex subunit D-like isoform X1 [Cucumis melo]	[more]
XP_004139660.1	2.7e-106	81.33	PREDICTED: INO80 complex subunit D [Cucumis sativus] >KGN44580.1 hypothetical pr...	[more]
XP_022150569.1	3.8e-100	76.76	INO80 complex subunit D-like isoform X1 [Momordica charantia] >XP_022150579.1 IN...	[more]
PON42812.1	7.5e-72	63.25	KAT8 regulatory NSL complex subunit [Trema orientalis]	[more]

BLAST of Carg25542-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31600.1	1.4e-40	45.09	unknown protein	[more]
AT3G53860.1	5.9e-39	45.02	unknown protein	[more]
AT1G05860.1	5.6e-37	41.77	unknown protein	[more]

BLAST of Carg25542-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54J07\|IN80D_DICDI	2.0e-07	39.06	INO80 complex subunit D OS=Dictyostelium discoideum OX=44689 GN=DDB_G0288447 PE=...	[more]

BLAST of Carg25542-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BH19\|A0A1S3BH19_CUCME	4.7e-107	81.74	INO80 complex subunit D-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489752 ...	[more]
tr\|A0A0A0K4I2\|A0A0A0K4I2_CUCSA	1.8e-106	81.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337070 PE=4 SV=1	[more]
tr\|A0A2P5B201\|A0A2P5B201_9ROSA	4.9e-72	63.25	KAT8 regulatory NSL complex subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_3...	[more]
tr\|A0A2P5C305\|A0A2P5C305_PARAD	9.3e-71	62.82	KAT8 regulatory NSL complex subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x...	[more]
tr\|W9SSR1\|W9SSR1_9ROSA	7.4e-68	60.96	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011783 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0000123	histone acetyltransferase complex

Vocabulary: **INTERPRO**
Term	Definition
IPR026316	NSL2
IPR025927	Potential_DNA-bd

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000123	histone acetyltransferase complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25542	Carg25542	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25542-RA.three_prime_UTR.1	Carg25542-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25542-RA.CDS.2	Carg25542-RA.CDS.2	CDS
Carg25542-RA.CDS.1	Carg25542-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25542-RA.exon.2	Carg25542-RA.exon.2	exon
Carg25542-RA.exon.1	Carg25542-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25542-RA	Carg25542-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025927	Potential DNA-binding domain	PFAM	PF13891	zf-C3Hc3H	coord: 122..183 e-value: 3.6E-16 score: 59.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR13453:SF3	SUBFAMILY NOT NAMED	coord: 30..235
IPR026316	KAT8 regulatory NSL complex subunit 2	PANTHER	PTHR13453	UNCHARACTERIZED	coord: 30..235