Carg25243 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25243
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	10 kDa chaperonin-like
Location	Cucurbita_argyrosperma_scaffold_210 : 55516 .. 57170 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCCAATAGCCACATAAAAGCACCTCTTCTCGTCGCCTTCCTACTCCAAAACCCTAATTCTTCGAGCACAGACGTTGCACGAACAATCAACTCAAAGACGAATGGCGAAGCGATTAATTCCATTCTTCAATCGTGTCCTGATCGAGAAAATTGTTCCTCCTTCCAAAACCACCGCCGGCATTCTTCTCCCAGAGAGCTCCACCAAGGTATTTTGCAATGTAGCATTCGTTTTATCTGTAGTTTCATTTCAATTTTCGTTGTCCTTACTTGATATTTGGTTTATATGTGATTAACCGATGTTTGCTCCGACAGTTGAACTCCGGTAAGGTGGTTGCAGTGGGTCCTGGTGCACGGGATAGAAACGGGAATCTGATTCCGGTCAGTGTGAAAGAAGGTGATACCGTTCTTTTGCCTGAATATGGAGGCACGTCGGTGAAGCTTGGAGAGAAAGAGTATGATTTTAAACAGTTTTAACTTAGTTTTCTTTCTTTGTTTGCGGAAATGGTCGTCTGCGACATAATTCGTCCTGCACTTTTTATTATGCTTGTTTTGTTTGCATTTTTAGTTCACTAACGTAAACTCATGTCTCTGGGGGCCCCATCTCCGATTCTTAATGAATTTGAATTCTTGTTAAACTAATTAATAAAAAAAAGTTTAAGAGCTAAATTTGGTTTCGACAGAGTTGTGGGATAGAACTTAACTTGTTGTGTTAAAACTAAGTATTTCAAAGTCCAAGAGAGAAAACATAAAGCTGAATCAACTAAAATGTACAGGAAGATTTAGGGCTAAGAGTGAATTTAAGAGGATTTGTAGAAAGATTTAAAGCTAGTGCATTAACTCTTATATTTGATTAGATAATGAACAAGTGTTTTTGAAACTTTCAGAGGATAAAAACACTTAAAAAGTACTTTCGAGAGAAGAACTAAATTAAAATAGCATTTTTGTATTCATTTTCTTGATTTTAGTTTGAACTCTTTGATTTGGGTTTATCTGCAGGTTCCATTTGTTTAGAGATGAAGACCTTTTGGGTACTCTACATGATTGATAGATTCATCCGACTCAATGGTGTGGTCGGATTGCGCTTTTTGCAAGAGGAGCTCATTCTGGTACTCTGAGTTGATTCTCTTCTCTTCCATGTTGTAGCTTCTTATTCACTGCAATAATGAAGGTTGCCATCATTTTATGGTTAGTTTTCCATTTGGATAAGTCTTAATGGAAACTCTTTTCAGTTCATCGTTGCTTCTGTTGTGATTCCTTATCTTCATTCAGCATTTGTTTTGTTTTTCTAATGGGTTGGAGGAATAGAGAACTGTTGTATTTGATGGCTAAGGCTATTTTGTAGGAATTTGGGGGCTTTTTATAACATACGATTATGGAAATAAGATAGTTCTGAGTTGCTTCAATTACTTTGTTCTTCCTATTTTGTTTCCACTCGTTCTAAATCCAATGAGATACATAATTATAGGACTTACATATTGAATAAAAAAACAGTCTTGTGCGATCGAATTATGATGTTATGGATGGTTAATCTTGTGTTAAGTCATGTTTGTATCACATGAAAGAGGAGAATGAGTTGGAGTAATTATGGGGTACAGTTGTTTATATAGCCAATGATTGTAATGTTCTCACTTCCTTACCGAATACAAAAATTTT

mRNA sequence

TCTTCCAATAGCCACATAAAAGCACCTCTTCTCGTCGCCTTCCTACTCCAAAACCCTAATTCTTCGAGCACAGACGTTGCACGAACAATCAACTCAAAGACGAATGGCGAAGCGATTAATTCCATTCTTCAATCGTGTCCTGATCGAGAAAATTGTTCCTCCTTCCAAAACCACCGCCGGCATTCTTCTCCCAGAGAGCTCCACCAAGTTGAACTCCGGTAAGGTGGTTGCAGTGGGTCCTGGTGCACGGGATAGAAACGGGAATCTGATTCCGGTCAGTGTGAAAGAAGGTGATACCGTTCTTTTGCCTGAATATGGAGGCACGTCGGTGAAGCTTGGAGAGAAAGAGTTCCATTTGTTTAGAGATGAAGACCTTTTGGGTACTCTACATGATTGATAGATTCATCCGACTCAATGGTGTGGTCGGATTGCGCTTTTTGCAAGAGGAGCTCATTCTGGTACTCTGAGTTGATTCTCTTCTCTTCCATGTTGTAGCTTCTTATTCACTGCAATAATGAAGGTTGCCATCATTTTATGGTTAGTTTTCCATTTGGATAAGTCTTAATGGAAACTCTTTTCAGTTCATCGTTGCTTCTGTTGTGATTCCTTATCTTCATTCAGCATTTGTTTTGTTTTTCTAATGGGTTGGAGGAATAGAGAACTGTTGTATTTGATGGCTAAGGCTATTTTGTAGGAATTTGGGGGCTTTTTATAACATACGATTATGGAAATAAGATAGTTCTGAGTTGCTTCAATTACTTTGTTCTTCCTATTTTGTTTCCACTCGTTCTAAATCCAATGAGATACATAATTATAGGACTTACATATTGAATAAAAAAACAGTCTTGTGCGATCGAATTATGATGTTATGGATGGTTAATCTTGTGTTAAGTCATGTTTGTATCACATGAAAGAGGAGAATGAGTTGGAGTAATTATGGGGTACAGTTGTTTATATAGCCAATGATTGTAATGTTCTCACTTCCTTACCGAATACAAAAATTTT

Coding sequence (CDS)

ATGGCGAAGCGATTAATTCCATTCTTCAATCGTGTCCTGATCGAGAAAATTGTTCCTCCTTCCAAAACCACCGCCGGCATTCTTCTCCCAGAGAGCTCCACCAAGTTGAACTCCGGTAAGGTGGTTGCAGTGGGTCCTGGTGCACGGGATAGAAACGGGAATCTGATTCCGGTCAGTGTGAAAGAAGGTGATACCGTTCTTTTGCCTGAATATGGAGGCACGTCGGTGAAGCTTGGAGAGAAAGAGTTCCATTTGTTTAGAGATGAAGACCTTTTGGGTACTCTACATGATTGA

Protein sequence

MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSVKEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD

Homology

[Close]

BLAST of Carg25243 vs. NCBI nr
Match: XP_022923512.1 (10 kDa chaperonin, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 194.5 bits (493), Expect = 1.7e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV
Sbjct: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD
Sbjct: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 97

[Close]

BLAST of Carg25243 vs. NCBI nr
Match: XP_023550871.1 (10 kDa chaperonin, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.7 bits (491), Expect = 2.8e-46
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV
Sbjct: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGTSVKLGEKEFHLFRDED+LGTLHD
Sbjct: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDILGTLHD 97

[Close]

BLAST of Carg25243 vs. NCBI nr
Match: XP_022990905.1 (10 kDa chaperonin, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 95/97 (97.94%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDR+GNLIPVSV
Sbjct: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRSGNLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGTSVKLGEKEFHLFRDED+LGTLHD
Sbjct: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDILGTLHD 97

[Close]

BLAST of Carg25243 vs. NCBI nr
Match: XP_022152333.1 (10 kDa chaperonin, mitochondrial-like [Momordica charantia])

HSP 1 Score: 183.7 bits (465), Expect = 2.9e-43
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIP  NRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDR+GNL+PVSV
Sbjct: 1  MAKRLIPLLNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRSGNLVPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLP+YGGT VKLGEKEFHLFRDED+LGTLHD
Sbjct: 61 KEGDTVLLPDYGGTPVKLGEKEFHLFRDEDILGTLHD 97

[Close]

BLAST of Carg25243 vs. NCBI nr
Match: XP_008467132.1 (PREDICTED: 10 kDa chaperonin-like [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-41
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIP  NRVLIEKIVPPSKT+AGILLPESS+KLNSGKV+AVGPGARD NGNL+PV V
Sbjct: 1  MAKRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDINGNLVPVCV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLH 97
          KEGDTVLLPEYGGTSVKLGEKEFHLFRDED+LGTLH
Sbjct: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDILGTLH 96

[Close]

BLAST of Carg25243 vs. TAIR10
Match: AT1G14980.1 (chaperonin 10)

HSP 1 Score: 160.6 bits (405), Expect = 4.8e-40
Identity = 73/97 (75.26%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          M KRLIP FNR+L+++++ P+KT +GILLPE S+KLNSGKV+AVGPG+RD++G LIPVSV
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGT VKLGE E+HLFRDED+LGTLH+
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEYHLFRDEDVLGTLHE 97

[Close]

BLAST of Carg25243 vs. TAIR10
Match: AT1G23100.1 (GroES-like family protein)

HSP 1 Score: 159.5 bits (402), Expect = 1.1e-39
Identity = 76/97 (78.35%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIP  NRVL+EKI+PPSKT +GILLPE S++LNSG+V+AVGPGARDR GNLIPVSV
Sbjct: 1  MAKRLIPTLNRVLVEKILPPSKTVSGILLPEKSSQLNSGRVIAVGPGARDRAGNLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGD VLLPE+GGT VKLGEKEF L+RDED++ TLH+
Sbjct: 61 KEGDNVLLPEFGGTQVKLGEKEFLLYRDEDIMATLHE 97

[Close]

BLAST of Carg25243 vs. Swiss-Prot
Match: sp|P34893|CH10_ARATH (10 kDa chaperonin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN10 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.7e-39
Identity = 73/97 (75.26%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          M KRLIP FNR+L+++++ P+KT +GILLPE S+KLNSGKV+AVGPG+RD++G LIPVSV
Sbjct: 1  MMKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGT VKLGE E+HLFRDED+LGTLH+
Sbjct: 61 KEGDTVLLPEYGGTQVKLGENEYHLFRDEDVLGTLHE 97

[Close]

BLAST of Carg25243 vs. Swiss-Prot
Match: sp|Q96539|CH10_BRANA (10 kDa chaperonin OS=Brassica napus OX=3708 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-38
Identity = 73/97 (75.26%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          M KRLIP FNR+L++ ++ P+KT +GILLPE ++KLNSGKV+AVGPG+RD++G LIPVSV
Sbjct: 1  MMKRLIPTFNRILVQGVIQPAKTESGILLPEKASKLNSGKVIAVGPGSRDKDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGT VKLGEKE+HLFRDED+LGTLH+
Sbjct: 61 KEGDTVLLPEYGGTQVKLGEKEYHLFRDEDVLGTLHE 97

[Close]

BLAST of Carg25243 vs. Swiss-Prot
Match: sp|Q64433|CH10_MOUSE (10 kDa heat shock protein, mitochondrial OS=Mus musculus OX=10090 GN=Hspe1 PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-19
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 3   KRLIPFFNRVLIEKIVPPSKTTAGILLPESST-KLNSGKVVAVGPGARDRNGNLIPVSVK 62
           ++ +P F+RVL+E+    + T  GI+LPE S  K+    VVAVG G + ++G + PVSVK
Sbjct: 7   RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKSGEIEPVSVK 66

Query: 63  EGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
            GD VLLPEYGGT V L +K++ LFRD D+LG   D
Sbjct: 67  VGDKVLLPEYGGTKVVLDDKDYFLFRDSDILGKYVD 102

[Close]

BLAST of Carg25243 vs. Swiss-Prot
Match: sp|P61603|CH10_BOVIN (10 kDa heat shock protein, mitochondrial OS=Bos taurus OX=9913 GN=HSPE1 PE=3 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-19
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 3   KRLIPFFNRVLIEKIVPPSKTTAGILLPESST-KLNSGKVVAVGPGARDRNGNLIPVSVK 62
           ++ +P F+RVL+E+    + T  GI+LPE S  K+    VVAVG G++ + G + PVSVK
Sbjct: 7   RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVK 66

Query: 63  EGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
            GD VLLPEYGGT V L +K++ LFRD D+LG   D
Sbjct: 67  VGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102

[Close]

BLAST of Carg25243 vs. Swiss-Prot
Match: sp|P61604|CH10_HUMAN (10 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPE1 PE=1 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-19
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 3   KRLIPFFNRVLIEKIVPPSKTTAGILLPESST-KLNSGKVVAVGPGARDRNGNLIPVSVK 62
           ++ +P F+RVL+E+    + T  GI+LPE S  K+    VVAVG G++ + G + PVSVK
Sbjct: 7   RKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVK 66

Query: 63  EGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
            GD VLLPEYGGT V L +K++ LFRD D+LG   D
Sbjct: 67  VGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102

[Close]

BLAST of Carg25243 vs. TrEMBL
Match: tr|A0A1S3CU36|A0A1S3CU36_CUCME (10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC103504560 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.8e-41
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIP  NRVLIEKIVPPSKT+AGILLPESS+KLNSGKV+AVGPGARD NGNL+PV V
Sbjct: 1  MAKRLIPSLNRVLIEKIVPPSKTSAGILLPESSSKLNSGKVIAVGPGARDINGNLVPVCV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLH 97
          KEGDTVLLPEYGGTSVKLGEKEFHLFRDED+LGTLH
Sbjct: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDILGTLH 96

[Close]

BLAST of Carg25243 vs. TrEMBL
Match: tr|A0A251U2Z0|A0A251U2Z0_HELAN (Putative groES-like family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0212111 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-40
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIP  NRVL+EKIVPPSKTTAGILLPE S+KLNSGKV+AVGPGARD +GN IPV V
Sbjct: 1  MAKRLIPCLNRVLVEKIVPPSKTTAGILLPEKSSKLNSGKVIAVGPGARDNSGNTIPVGV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGT VKLGEKE+HLFRDED+LGTLHD
Sbjct: 61 KEGDTVLLPEYGGTEVKLGEKEYHLFRDEDILGTLHD 97

[Close]

BLAST of Carg25243 vs. TrEMBL
Match: tr|A0A059D6K0|A0A059D6K0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02909 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-40
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRL+P  NRVL+EKIVPPSKTTAGILLPE S KLNSGKVVAVGPGARD +GN +PVSV
Sbjct: 1  MAKRLVPLLNRVLVEKIVPPSKTTAGILLPEKSAKLNSGKVVAVGPGARDAHGNAVPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGT VKLGEK++HL+RDED+LGTLHD
Sbjct: 61 KEGDTVLLPEYGGTQVKLGEKDYHLYRDEDILGTLHD 97

[Close]

BLAST of Carg25243 vs. TrEMBL
Match: tr|A0A2P6R3B5|A0A2P6R3B5_ROSCH (Putative groES chaperonin family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0441491 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-40
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIP  NRVLIEKI+PPSKTTAGILLPESS KLNSGKVVAVGPG +D+ GN IPV+V
Sbjct: 1  MAKRLIPTLNRVLIEKIIPPSKTTAGILLPESSAKLNSGKVVAVGPGTKDKAGNAIPVAV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGT VKLG+KEFHLFRDED+LGTLHD
Sbjct: 61 KEGDTVLLPEYGGTQVKLGDKEFHLFRDEDILGTLHD 97

[Close]

BLAST of Carg25243 vs. TrEMBL
Match: tr|M0TSH4|M0TSH4_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103995368 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-40
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MAKRLIPFFNRVLIEKIVPPSKTTAGILLPESSTKLNSGKVVAVGPGARDRNGNLIPVSV 60
          MAKRLIP FNRVL+EKIVPPSKT+AGILLPE +TKLNSGKVVAVGPGARDR+G LIPVSV
Sbjct: 1  MAKRLIPLFNRVLVEKIVPPSKTSAGILLPEKTTKLNSGKVVAVGPGARDRDGKLIPVSV 60

Query: 61 KEGDTVLLPEYGGTSVKLGEKEFHLFRDEDLLGTLHD 98
          KEGDTVLLPEYGGT VKLGEKE+HL+RD+D+LGTL D
Sbjct: 61 KEGDTVLLPEYGGTEVKLGEKEYHLYRDDDILGTLCD 97

The following BLAST results are available for this feature:

BLAST of Carg25243 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923512.1	1.7e-46	100.00	10 kDa chaperonin, mitochondrial-like [Cucurbita moschata]	[more]
XP_023550871.1	2.8e-46	98.97	10 kDa chaperonin, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
XP_022990905.1	1.1e-45	97.94	10 kDa chaperonin, mitochondrial-like [Cucurbita maxima]	[more]
XP_022152333.1	2.9e-43	92.78	10 kDa chaperonin, mitochondrial-like [Momordica charantia]	[more]
XP_008467132.1	2.7e-41	90.63	PREDICTED: 10 kDa chaperonin-like [Cucumis melo]	[more]

BLAST of Carg25243 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14980.1	4.8e-40	75.26	chaperonin 10	[more]
AT1G23100.1	1.1e-39	78.35	GroES-like family protein	[more]

BLAST of Carg25243 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P34893\|CH10_ARATH	8.7e-39	75.26	10 kDa chaperonin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN10 PE=1 S...	[more]
sp\|Q96539\|CH10_BRANA	1.5e-38	75.26	10 kDa chaperonin OS=Brassica napus OX=3708 PE=3 SV=1	[more]
sp\|Q64433\|CH10_MOUSE	3.4e-19	50.00	10 kDa heat shock protein, mitochondrial OS=Mus musculus OX=10090 GN=Hspe1 PE=1 ...	[more]
sp\|P61603\|CH10_BOVIN	5.9e-19	50.00	10 kDa heat shock protein, mitochondrial OS=Bos taurus OX=9913 GN=HSPE1 PE=3 SV=...	[more]
sp\|P61604\|CH10_HUMAN	5.9e-19	50.00	10 kDa heat shock protein, mitochondrial OS=Homo sapiens OX=9606 GN=HSPE1 PE=1 S...	[more]

BLAST of Carg25243 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CU36\|A0A1S3CU36_CUCME	1.8e-41	90.63	10 kDa chaperonin-like OS=Cucumis melo OX=3656 GN=LOC103504560 PE=3 SV=1	[more]
tr\|A0A251U2Z0\|A0A251U2Z0_HELAN	1.2e-40	86.60	Putative groES-like family protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08...	[more]
tr\|A0A059D6K0\|A0A059D6K0_EUCGR	2.6e-40	84.54	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02909 PE=3 SV...	[more]
tr\|A0A2P6R3B5\|A0A2P6R3B5_ROSCH	2.6e-40	86.60	Putative groES chaperonin family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g044...	[more]
tr\|M0TSH4\|M0TSH4_MUSAM	2.6e-40	86.60	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103995...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **INTERPRO**
Term	Definition
IPR011032	GroES-like_sf
IPR037124	Chaperonin_GroES_sf
IPR020818	Chaperonin_GroES

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25243-RA	Carg25243-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020818	GroES chaperonin family	PRINTS	PR00297	CHAPERONIN10	coord: 82..95 score: 26.86 coord: 5..20 score: 26.43 coord: 61..73 score: 52.0 coord: 26..47 score: 40.29
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 4..95 e-value: 1.6E-32 score: 124.0
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 5..94 e-value: 1.9E-24 score: 85.4
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 1..96
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 4..95 e-value: 1.60205E-33 score: 112.215
IPR037124	GroES chaperonin superfamily	GENE3D	G3DSA:2.30.33.40		coord: 1..97 e-value: 1.0E-33 score: 117.3
None	No IPR available	PANTHER	PTHR10772:SF25	10 KDA CHAPERONIN	coord: 1..96
IPR011032	GroES-like superfamily	SUPERFAMILY	SSF50129	GroES-like	coord: 3..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25243	Cla003925	Watermelon (97103) v1	carwmB0884
Carg25243	Csa5G570400	Cucumber (Chinese Long) v2	carcuB0893
Carg25243	MELO3C005305	Melon (DHL92) v3.5.1	carmeB0867
Carg25243	ClCG01G006240	Watermelon (Charleston Gray)	carwcgB0857
Carg25243	CSPI05G19570	Wild cucumber (PI 183967)	carcpiB0913
Carg25243	Cucsa.280360	Cucumber (Gy14) v1	carcgyB1000
Carg25243	CmaCh04G021300	Cucurbita maxima (Rimu)	carcmaB1220
Carg25243	Lsi09G006590	Bottle gourd (USVL1VR-Ls)	carlsiB800
Carg25243	Cp4.1LG01g18500	Cucurbita pepo (Zucchini)	carcpeB1228
Carg25243	CsGy5G019080	Cucumber (Gy14) v2	carcgybB0866
Carg25243	MELO3C005305.2	Melon (DHL92) v3.6.1	carmedB0876
Carg25243	CsaV3_5G028420	Cucumber (Chinese Long) v3	carcucB0917
Carg25243	Cla97C01G006550	Watermelon (97103) v2	carwmbB0920
Carg25243	Bhi12G000768	Wax gourd	carwgoB1028

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25243	Cucumber (Gy14) v2	carcgybB0867
Carg25243	Cucurbita moschata (Rifu)	carcmoB1189
Carg25243	Wild cucumber (PI 183967)	carcpiB0915
Carg25243	Cucumber (Chinese Long) v2	carcuB0895
Carg25243	Bottle gourd (USVL1VR-Ls)	carlsiB799
Carg25243	Melon (DHL92) v3.5.1	carmeB0869
Carg25243	Watermelon (Charleston Gray)	carwcgB0856
Carg25243	Watermelon (97103) v1	carwmB0883
Carg25243	Watermelon (97103) v2	carwmbB0919