Carg24823 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24823
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	21.7 kDa class VI heat shock protein
Location	Cucurbita_argyrosperma_scaffold_157 : 222171 .. 223937 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCTGCCGGCATGGCCACTTCGAAGCCGCAACTGGAAGTCCATAAAGCAGACCACAGCCCTTCAAAATGGAGTGTGGCTCTTGGAGAAGAGGTTTTCAGCAGATTTGTGGGGCAACCCAATTCGGGTGTGCAGAAGGTGTTGGGCGAGGGCTCCTTGTTCAGCCCGCTGCTGTTCGGGAAGTTCTTCGACCCCGCCGATGCCTTTCCGCTCTGGGAGTTTGAGTCCGATCTGTTCATGTCAGCCCTCCGCAGCTCTGGGAAATCTTCAATTGATTGGTTTCAGACTGATCAGGAATACGTTCTTCAAGCAGAATTACAAGGTATTTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCTTTTTTTAATCTTAATATTTAATTTGCAAAATTAATTAAAAAAATTTGTATTTAGATGAAGATGTTAGAGATTTTTTGAAATTTAACTAAGAAGTGAAATTTTTATGCTTAGTTATTAAAATTTTAATTTGGATAAAAACAACTTTTAGGCTGTAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTAGAAGTGTTTAATGGATTTTTCAAAATATTAATTATTAGGTGCCAAATTAAATGAATTTTGATTATAAAATTAAAAAAATGGTGAGAGATCAAATTTATTTCAAATCAGAACCTCCCACATCGAAGAATTTGTAAACGATGGAGACTTTAAATTGGTAATCCCGTCCAACGTCCATTGGGGTGTGGGCCAGAAACGACACGCGCTAATTTAAACCCTAAACCTGTTTGACTGTTAAGGGGATTTTGCCGGCGTTTACCCCTGTGGATCCCAAAAAATCTTAAACGTTGATGCACTGCGCGTGGTTTAGTTTCCAGTTGTCTAATATAGCCTTTGAGGTTCGTAGGTGGGTGCTGCCTACACCATTGCCATGGTGTCTTGCGGCGGCAGCTATTGTCCTCGCCTCTTAATCACCCCCCCTTTTTTATTTTTACCAAAATTTTTACTCTTGTGATAGGTCTTTCAATTATAAATTAGACTTTAGAGTCTACTGGACAAAAATTAATTAGTTAGAATCGTATTATATATAAAATTTAAACTTAGGAAAACATATTAAATACAAAATTGAAAGTGAGTTTTAAATTTGACGGTGGTTAAGAGCATTCTCAAACATTTATTTTGCAGAGAGTTGAAGTTGAAAGGATGATAAAAGAGAGAATTGATTTTAATGGTGAAATTATGTTATCAACTTCGTTTTAAAAGACAATCCAAAGGGCCTTCCAACTCTCTCTCTCTCTGTAGCTACTCATTCAAAAAAGATTGGGTGATATGTTTGATTGACACAAACCAAAATTTTACAAACAGAACCTTGGAGAAACGCTTTGCAAATCTCCGTAGAAGACGGGAAGGTGTTAGAGATAAGTGGTCAGTTGAAGGAACAACAAAGAGAAGCCACCAAGCTGGTCGATTGGCGATGTGCCAATTGGTGGGAGCACGGATTCGTTCGGCGACTCGAGTTGCCTGAAGATGTTGATTGTTGTAGAATAGAGGCTCAGATGAAGAATGACACGATTCTTGAGATCAAGATTCCCAAGTTAGAATCGAATAGAGGTGCTGAATCAAAGAGCAAGGATTCTGATCAAGATGTTTAAGTTCATGGCCAAATTTGTAATGGAAAACATGTTTAACTTAAACTTAATTTACATATGCTCTGTGGATCTCAAATATATGTATGTTTCTGACCAACTTCTATGGATGAGAATACAAACACTTTCT

mRNA sequence

CCCCTGCCGGCATGGCCACTTCGAAGCCGCAACTGGAAGTCCATAAAGCAGACCACAGCCCTTCAAAATGGAGTGTGGCTCTTGGAGAAGAGGTTTTCAGCAGATTTGTGGGGCAACCCAATTCGGGTGTGCAGAAGGTGTTGGGCGAGGGCTCCTTGTTCAGCCCGCTGCTGTTCGGGAAGTTCTTCGACCCCGCCGATGCCTTTCCGCTCTGGGAGTTTGAGTCCGATCTGTTCATGTCAGCCCTCCGCAGCTCTGGGAAATCTTCAATTGATTGGTTTCAGACTGATCAGGAATACGTTCTTCAAGCAGAATTACAAGAACCTTGGAGAAACGCTTTGCAAATCTCCGTAGAAGACGGGAAGGTGTTAGAGATAAGTGGTCAGTTGAAGGAACAACAAAGAGAAGCCACCAAGCTGGTCGATTGGCGATGTGCCAATTGGTGGGAGCACGGATTCGTTCGGCGACTCGAGTTGCCTGAAGATGTTGATTGTTGTAGAATAGAGGCTCAGATGAAGAATGACACGATTCTTGAGATCAAGATTCCCAAGTTAGAATCGAATAGAGGTGCTGAATCAAAGAGCAAGGATTCTGATCAAGATGTTTAAGTTCATGGCCAAATTTGTAATGGAAAACATGTTTAACTTAAACTTAATTTACATATGCTCTGTGGATCTCAAATATATGTATGTTTCTGACCAACTTCTATGGATGAGAATACAAACACTTTCT

Coding sequence (CDS)

ATGGCCACTTCGAAGCCGCAACTGGAAGTCCATAAAGCAGACCACAGCCCTTCAAAATGGAGTGTGGCTCTTGGAGAAGAGGTTTTCAGCAGATTTGTGGGGCAACCCAATTCGGGTGTGCAGAAGGTGTTGGGCGAGGGCTCCTTGTTCAGCCCGCTGCTGTTCGGGAAGTTCTTCGACCCCGCCGATGCCTTTCCGCTCTGGGAGTTTGAGTCCGATCTGTTCATGTCAGCCCTCCGCAGCTCTGGGAAATCTTCAATTGATTGGTTTCAGACTGATCAGGAATACGTTCTTCAAGCAGAATTACAAGAACCTTGGAGAAACGCTTTGCAAATCTCCGTAGAAGACGGGAAGGTGTTAGAGATAAGTGGTCAGTTGAAGGAACAACAAAGAGAAGCCACCAAGCTGGTCGATTGGCGATGTGCCAATTGGTGGGAGCACGGATTCGTTCGGCGACTCGAGTTGCCTGAAGATGTTGATTGTTGTAGAATAGAGGCTCAGATGAAGAATGACACGATTCTTGAGATCAAGATTCCCAAGTTAGAATCGAATAGAGGTGCTGAATCAAAGAGCAAGGATTCTGATCAAGATGTTTAA

Protein sequence

MATSKPQLEVHKADHSPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFFDPADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKIPKLESNRGAESKSKDSDQDV

Homology

[Close]

BLAST of Carg24823 vs. NCBI nr
Match: XP_022985262.1 (21.7 kDa class VI heat shock protein [Cucurbita maxima])

HSP 1 Score: 399.1 bits (1024), Expect = 9.1e-108
Identity = 193/198 (97.47%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MATSKPQLEVHKADHSPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFFD 60
           MATSKPQLEVHKADHSPSKWSVALGEEVFS+FVGQPNSGVQKVLGEGSLFSPLLFGKFFD
Sbjct: 25  MATSKPQLEVHKADHSPSKWSVALGEEVFSKFVGQPNSGVQKVLGEGSLFSPLLFGKFFD 84

Query: 61  PADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKVL 120
           PADAFPLWEFESDL MSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKVL
Sbjct: 85  PADAFPLWEFESDLLMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKVL 144

Query: 121 EISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKIPK 180
           EISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEA+MKNDTILEIKIPK
Sbjct: 145 EISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEARMKNDTILEIKIPK 204

Query: 181 LESNRGAESKSKDSDQDV 199
           LE+NRGA+SKSKDSDQDV
Sbjct: 205 LETNRGADSKSKDSDQDV 222

[Close]

BLAST of Carg24823 vs. NCBI nr
Match: XP_023520414.1 (21.7 kDa class VI heat shock protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.7 bits (1018), Expect = 4.5e-107
Identity = 192/198 (96.97%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MATSKPQLEVHKADHSPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFFD 60
           MATSKPQLEVHKADH+PSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFG+FFD
Sbjct: 1   MATSKPQLEVHKADHNPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGRFFD 60

Query: 61  PADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKVL 120
           PADAFPLWEFE+DL MSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKVL
Sbjct: 61  PADAFPLWEFEADLLMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKVL 120

Query: 121 EISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKIPK 180
           EISGQLKEQQREATKLVDWRCANWWE+GFVRRLELPEDVDCCRIEA+MKNDTILEIKIPK
Sbjct: 121 EISGQLKEQQREATKLVDWRCANWWEYGFVRRLELPEDVDCCRIEARMKNDTILEIKIPK 180

Query: 181 LESNRGAESKSKDSDQDV 199
           LESNRGAESKSKDSDQDV
Sbjct: 181 LESNRGAESKSKDSDQDV 198

[Close]

BLAST of Carg24823 vs. NCBI nr
Match: ADU55792.1 (HSP23.0 [Citrullus lanatus])

HSP 1 Score: 315.5 bits (807), Expect = 1.3e-82
Identity = 156/199 (78.39%), Postives = 169/199 (84.92%), Query Frame = 0


Query: 1   MATSKPQLEVHKAD-HSPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFF 60
           MATSK QLEVHK D H+PSKWSV+LGEEVF +FVGQ NS VQ V G+GSLFSPLLFGKFF
Sbjct: 1   MATSKQQLEVHKEDHHTPSKWSVSLGEEVFRKFVGQANSAVQTVFGDGSLFSPLLFGKFF 60

Query: 61  DPADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKV 120
           DPADAFPLWEFESDL +S LR SGKSS+DWFQTDQEY LQAEL E WRNALQIS+EDGKV
Sbjct: 61  DPADAFPLWEFESDLLLSNLRISGKSSVDWFQTDQEYGLQAELLEAWRNALQISIEDGKV 120

Query: 121 LEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKIP 180
           LEISGQLKEQQRE     DWR  NWWEHG+VRRLELPED D  R+EA+MKND +LEIKIP
Sbjct: 121 LEISGQLKEQQREGRTTFDWRSVNWWEHGYVRRLELPEDADWSRMEARMKNDHVLEIKIP 180

Query: 181 KLESNRGAESKSKD-SDQD 198
           K E+N G ES SKD SD+D
Sbjct: 181 KSETNEGVESNSKDNSDED 199

[Close]

BLAST of Carg24823 vs. NCBI nr
Match: XP_004152915.1 (PREDICTED: 21.7 kDa class VI heat shock protein isoform X1 [Cucumis sativus] >KGN56157.1 hypothetical protein Csa_3G081340 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 158/200 (79.00%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1   MATSKPQLEVHKADH-SPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFF 60
           MATSK QLEVHK DH +PSKWSV+LGEEVF RF+GQ NS +QKV G+GSLFSPLLFGKFF
Sbjct: 1   MATSK-QLEVHKEDHPTPSKWSVSLGEEVFRRFLGQANSAIQKVFGDGSLFSPLLFGKFF 60

Query: 61  DPADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISV-EDGK 120
           DPADAFPLWEFESDL +S LR SGKSSIDW QTDQEYVLQAEL E WRNALQIS+ EDGK
Sbjct: 61  DPADAFPLWEFESDLLLSNLRISGKSSIDWSQTDQEYVLQAELLEAWRNALQISIEEDGK 120

Query: 121 VLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKI 180
           VLEISGQLKEQQRE    VDWR  +WWEHG+VRRLELPED D  R+EA++KND +LEIKI
Sbjct: 121 VLEISGQLKEQQREGKTTVDWRRVHWWEHGYVRRLELPEDADSSRMEARIKNDLVLEIKI 180

Query: 181 PKLESNRGAESKSKD-SDQD 198
           PKLE+N+G+ESKSKD SD+D
Sbjct: 181 PKLETNQGSESKSKDNSDED 199

[Close]

BLAST of Carg24823 vs. NCBI nr
Match: XP_008463443.1 (PREDICTED: 21.7 kDa class VI heat shock protein [Cucumis melo])

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 156/200 (78.00%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 1   MATSKPQLEVHKADHS-PSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFF 60
           MAT K QLEVHK DHS PSKWSV+LGEEVF RF+GQ NS +QKV G+GSLFSPLLFGKFF
Sbjct: 1   MATPK-QLEVHKEDHSTPSKWSVSLGEEVFRRFLGQANSAIQKVFGDGSLFSPLLFGKFF 60

Query: 61  DPADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVED-GK 120
           DPADAFPLWEFESDL +S LR SGKSSIDW QTDQEY+LQAEL E WRNALQIS+E+ GK
Sbjct: 61  DPADAFPLWEFESDLLLSNLRISGKSSIDWSQTDQEYILQAELLEAWRNALQISIEEGGK 120

Query: 121 VLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKI 180
           VLEISGQL+EQQRE    VDWR  NWWEHGFVRRLELPED D  R+EA++KND +LEIKI
Sbjct: 121 VLEISGQLREQQREGKTTVDWRRVNWWEHGFVRRLELPEDADSSRMEARIKNDLVLEIKI 180

Query: 181 PKLESNRGAESKSKD-SDQD 198
           PKLE+N+ +ESKSKD SD+D
Sbjct: 181 PKLETNQSSESKSKDNSDED 199

[Close]

BLAST of Carg24823 vs. TAIR10
Match: AT5G54660.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 194.1 bits (492), Expect = 8.0e-50
Identity = 92/181 (50.83%), Postives = 128/181 (70.72%), Query Frame = 0


Query: 7   QLEVHKADHSPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFFDPADAFP 66
           +LE+H  D +P KWSV LG++VF RF+       + V GEGSLFSP LFGK+FDP+DAFP
Sbjct: 9   KLEIHTDDKTPGKWSVPLGDDVFRRFLSGGGGSEKAVFGEGSLFSPFLFGKYFDPSDAFP 68

Query: 67  LWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVE-DGKVLEISGQ 126
           LWEFE+++ +++LRS G+  +DW QTDQ YVL++++    +N +Q+ V+ +G+V+EISGQ
Sbjct: 69  LWEFEAEVLLASLRSLGQCRVDWSQTDQAYVLKSDIPVVGKNNVQVYVDINGRVMEISGQ 128

Query: 127 LKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKND---TILEIKIPKLE 184
               ++ AT   DWR   WWEHG+VRRLELP D D    EA + N+   + LEI+IPK+ 
Sbjct: 129 WNSNKKAATN-SDWRSGRWWEHGYVRRLELPSDADAKYSEAFLSNNDDYSFLEIRIPKIN 188

[Close]

BLAST of Carg24823 vs. TAIR10
Match: AT1G59860.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 43/138 (31.16%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 59  FDPADAFPLWE-FESDLFMSALRSS-GKSSIDWFQTDQEYVLQAELQEPWRNALQISVED 118
           FDP  +  +W+ F+   F S+  S+   + +DW +T + +V +A+L    +  +++ +ED
Sbjct: 19  FDPF-SLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIED 78

Query: 119 GKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEI 178
             VL+ISG+   ++ E  K   W        GF R+  LPE+V   +++A M+N  +L +
Sbjct: 79  DSVLKISGERHVEKEE--KQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENG-VLTV 138

Query: 179 KIPKLESN-RGAESKSKD 194
            +PK+E+N + A+ KS D
Sbjct: 139 TVPKVETNKKKAQVKSID 152

[Close]

BLAST of Carg24823 vs. TAIR10
Match: AT1G53540.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 5.3e-09
Identity = 45/154 (29.22%), Postives = 71/154 (46.10%), Query Frame = 0


Query: 52  PLLFG----KFFDPADAFPLWEFESDLFMSALRSS--------GKSSIDWFQTDQEYVLQ 111
           P +FG      FDP        FE  L  S L ++          + +DW +T + +V +
Sbjct: 5   PSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFK 64

Query: 112 AELQEPWRNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDV 171
           A+L    +  +++ VEDG +L+ISG+   +  E  K   W         F RR  LPE+ 
Sbjct: 65  ADLPGLRKEEVKVEVEDGNILQISGERSNENEE--KNDKWHRVERSSGKFTRRFRLPENA 124

Query: 172 DCCRIEAQMKNDTILEIKIPKLESNRGAESKSKD 194
               I+A M+N  +L + +PK+   +  E KS D
Sbjct: 125 KMEEIKASMENG-VLSVTVPKVPEKK-PEVKSID 154

[Close]

BLAST of Carg24823 vs. TAIR10
Match: AT1G07400.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 9.0e-09
Identity = 44/143 (30.77%), Postives = 80/143 (55.94%), Query Frame = 0


Query: 59  FDPADAFPLWE-FESDLFMSALRSSGKSS------IDWFQTDQEYVLQAELQEPWRNALQ 118
           FDP  +  +W+ F+   F S+L  SG++S      +DW +T + +V +A+L    +  ++
Sbjct: 18  FDPF-SLDVWDPFKELQFPSSL--SGETSAITNARVDWKETAEAHVFKADLPGMKKEEVK 77

Query: 119 ISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKND 178
           + +ED  VL+ISG+   ++ E  K   W         F R+ +LPE+V   +++A M+N 
Sbjct: 78  VEIEDDSVLKISGERHVEKEE--KQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENG 137

Query: 179 TILEIKIPKL-ESNRGAESKSKD 194
            +L + +PK+ E+ + A+ KS D
Sbjct: 138 -VLTVTVPKVEEAKKKAQVKSID 154

[Close]

BLAST of Carg24823 vs. TAIR10
Match: AT3G46230.1 (heat shock protein 17.4)

HSP 1 Score: 57.8 bits (138), Expect = 9.0e-09
Identity = 43/154 (27.92%), Postives = 75/154 (48.70%), Query Frame = 0


Query: 52  PLLFG----KFFDPADAFPLWE-FESDLFMSALRSSGK-------SSIDWFQTDQEYVLQ 111
           P  FG      FDP  +  +W+ FE  L      +  K       + +DW +T + +V +
Sbjct: 5   PSFFGGRRTNVFDPF-SLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFK 64

Query: 112 AELQEPWRNALQISVEDGKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDV 171
           A++    +  +++ VEDG +L+ISG+   +  E  K   W         F+RR  LPE+ 
Sbjct: 65  ADVPGLKKEEVKVEVEDGNILQISGERSSENEE--KSDTWHRVERSSGKFMRRFRLPENA 124

Query: 172 DCCRIEAQMKNDTILEIKIPKLESNRGAESKSKD 194
               ++A M+N  +L + +PK++ ++  E KS D
Sbjct: 125 KVEEVKASMENG-VLSVTVPKVQESK-PEVKSVD 153

[Close]

BLAST of Carg24823 vs. Swiss-Prot
Match: sp|Q9FIT9|HS217_ARATH (21.7 kDa class VI heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP21.7 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-48
Identity = 92/181 (50.83%), Postives = 128/181 (70.72%), Query Frame = 0


Query: 7   QLEVHKADHSPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFFDPADAFP 66
           +LE+H  D +P KWSV LG++VF RF+       + V GEGSLFSP LFGK+FDP+DAFP
Sbjct: 9   KLEIHTDDKTPGKWSVPLGDDVFRRFLSGGGGSEKAVFGEGSLFSPFLFGKYFDPSDAFP 68

Query: 67  LWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVE-DGKVLEISGQ 126
           LWEFE+++ +++LRS G+  +DW QTDQ YVL++++    +N +Q+ V+ +G+V+EISGQ
Sbjct: 69  LWEFEAEVLLASLRSLGQCRVDWSQTDQAYVLKSDIPVVGKNNVQVYVDINGRVMEISGQ 128

Query: 127 LKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKND---TILEIKIPKLE 184
               ++ AT   DWR   WWEHG+VRRLELP D D    EA + N+   + LEI+IPK+ 
Sbjct: 129 WNSNKKAATN-SDWRSGRWWEHGYVRRLELPSDADAKYSEAFLSNNDDYSFLEIRIPKIN 188

[Close]

BLAST of Carg24823 vs. Swiss-Prot
Match: sp|Q6AUW3|HS223_ORYSJ (22.3 kDa class VI heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP22.3 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.3e-37
Identity = 81/185 (43.78%), Postives = 118/185 (63.78%), Query Frame = 0


Query: 8   LEVHKA--DHSPSKWSVALGEEVFSRFVGQPNSGV-------QKVLGEGSLFSPLLFGKF 67
           +EV +A  D +  +W ++L E  FS F+     GV       + V GEGSLFSP LFGKF
Sbjct: 7   IEVRQAVGDGAAPRWRMSLLENTFSSFLQSIGGGVAADGAAARAVFGEGSLFSPFLFGKF 66

Query: 68  FDPADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDG- 127
           FDPADAFPLWEFE ++ ++ALR   ++++DW +TD EY L+A++    +  +++S +D  
Sbjct: 67  FDPADAFPLWEFEPEVLLAALRRGARTTVDWAETDSEYYLRADIPGGRKCDVEVSGDDAM 126

Query: 128 KVLEISGQLKEQQREATKL-VDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKN-DTILE 181
           +V+++SG  +           DWR   WWEHGFVRR+ELPED D  ++EA   + + +LE
Sbjct: 127 RVVDVSGLWRAXXXXXXXXGRDWRAGRWWEHGFVRRVELPEDADWRKVEAFFDDGEGLLE 186

[Close]

BLAST of Carg24823 vs. Swiss-Prot
Match: sp|P31673|HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-10
Identity = 44/147 (29.93%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 43  VLGEGSLFSPLLFGKFFDPADAFPLWEFESDLFMSALRSSGK---SSIDWFQTDQEYVLQ 102
           ++   ++F P      +DP D FP       LF  A   +     + IDW +T + +V +
Sbjct: 3   MIRRSNVFDPFSL-DLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFK 62

Query: 103 AELQEPWRNALQISVEDGKVLEISGQ-LKEQQREATKLVDWRCANWWEHGFVRRLELPED 162
           A++    +  +++ VEDG VL+ISG+ +KEQ+ +  K   W         F+RR  LPE+
Sbjct: 63  ADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDK---WHRVERSSGKFLRRFRLPEN 122

Query: 163 VDCCRIEAQMKNDTILEIKIPKLESNR 186
               +I+A M+N  +L + +PK E  +
Sbjct: 123 TKPEQIKASMENG-VLTVTVPKEEPKK 144

[Close]

BLAST of Carg24823 vs. Swiss-Prot
Match: sp|P27397|HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 39/129 (30.23%), Postives = 69/129 (53.49%), Query Frame = 0


Query: 59  FDPADAFPLWEFE--SDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVED 118
           +DP   +PL      S  F     +   + IDW +T Q +V +A+L    +  +++ VE+
Sbjct: 24  WDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEE 83

Query: 119 GKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEI 178
           GKVL+ISG+  +++ E  K   W    +    F+RR  LPE+ +   ++A M+N  +L +
Sbjct: 84  GKVLQISGERNKEKEE--KNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENG-VLTV 143

Query: 179 KIPKLESNR 186
            +PK+E  +
Sbjct: 144 TVPKVEMKK 149

[Close]

BLAST of Carg24823 vs. Swiss-Prot
Match: sp|Q9XIE3|HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-09
Identity = 43/138 (31.16%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 59  FDPADAFPLWE-FESDLFMSALRSS-GKSSIDWFQTDQEYVLQAELQEPWRNALQISVED 118
           FDP  +  +W+ F+   F S+  S+   + +DW +T + +V +A+L    +  +++ +ED
Sbjct: 19  FDPF-SLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIED 78

Query: 119 GKVLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEI 178
             VL+ISG+   ++ E  K   W        GF R+  LPE+V   +++A M+N  +L +
Sbjct: 79  DSVLKISGERHVEKEE--KQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENG-VLTV 138

Query: 179 KIPKLESN-RGAESKSKD 194
            +PK+E+N + A+ KS D
Sbjct: 139 TVPKVETNKKKAQVKSID 152

[Close]

BLAST of Carg24823 vs. TrEMBL
Match: tr|H6TB45|H6TB45_CITLA (HSP23.0 OS=Citrullus lanatus OX=3654 PE=2 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 8.7e-83
Identity = 156/199 (78.39%), Postives = 169/199 (84.92%), Query Frame = 0


Query: 1   MATSKPQLEVHKAD-HSPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFF 60
           MATSK QLEVHK D H+PSKWSV+LGEEVF +FVGQ NS VQ V G+GSLFSPLLFGKFF
Sbjct: 1   MATSKQQLEVHKEDHHTPSKWSVSLGEEVFRKFVGQANSAVQTVFGDGSLFSPLLFGKFF 60

Query: 61  DPADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKV 120
           DPADAFPLWEFESDL +S LR SGKSS+DWFQTDQEY LQAEL E WRNALQIS+EDGKV
Sbjct: 61  DPADAFPLWEFESDLLLSNLRISGKSSVDWFQTDQEYGLQAELLEAWRNALQISIEDGKV 120

Query: 121 LEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKIP 180
           LEISGQLKEQQRE     DWR  NWWEHG+VRRLELPED D  R+EA+MKND +LEIKIP
Sbjct: 121 LEISGQLKEQQREGRTTFDWRSVNWWEHGYVRRLELPEDADWSRMEARMKNDHVLEIKIP 180

Query: 181 KLESNRGAESKSKD-SDQD 198
           K E+N G ES SKD SD+D
Sbjct: 181 KSETNEGVESNSKDNSDED 199

[Close]

BLAST of Carg24823 vs. TrEMBL
Match: tr|A0A0A0L6D5|A0A0A0L6D5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081340 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 9.6e-82
Identity = 158/200 (79.00%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1   MATSKPQLEVHKADH-SPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFF 60
           MATSK QLEVHK DH +PSKWSV+LGEEVF RF+GQ NS +QKV G+GSLFSPLLFGKFF
Sbjct: 1   MATSK-QLEVHKEDHPTPSKWSVSLGEEVFRRFLGQANSAIQKVFGDGSLFSPLLFGKFF 60

Query: 61  DPADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISV-EDGK 120
           DPADAFPLWEFESDL +S LR SGKSSIDW QTDQEYVLQAEL E WRNALQIS+ EDGK
Sbjct: 61  DPADAFPLWEFESDLLLSNLRISGKSSIDWSQTDQEYVLQAELLEAWRNALQISIEEDGK 120

Query: 121 VLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKI 180
           VLEISGQLKEQQRE    VDWR  +WWEHG+VRRLELPED D  R+EA++KND +LEIKI
Sbjct: 121 VLEISGQLKEQQREGKTTVDWRRVHWWEHGYVRRLELPEDADSSRMEARIKNDLVLEIKI 180

Query: 181 PKLESNRGAESKSKD-SDQD 198
           PKLE+N+G+ESKSKD SD+D
Sbjct: 181 PKLETNQGSESKSKDNSDED 199

[Close]

BLAST of Carg24823 vs. TrEMBL
Match: tr|A0A1S3CJA6|A0A1S3CJA6_CUCME (21.7 kDa class VI heat shock protein OS=Cucumis melo OX=3656 GN=LOC103501614 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 8.2e-81
Identity = 156/200 (78.00%), Postives = 173/200 (86.50%), Query Frame = 0


Query: 1   MATSKPQLEVHKADHS-PSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFF 60
           MAT K QLEVHK DHS PSKWSV+LGEEVF RF+GQ NS +QKV G+GSLFSPLLFGKFF
Sbjct: 1   MATPK-QLEVHKEDHSTPSKWSVSLGEEVFRRFLGQANSAIQKVFGDGSLFSPLLFGKFF 60

Query: 61  DPADAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVED-GK 120
           DPADAFPLWEFESDL +S LR SGKSSIDW QTDQEY+LQAEL E WRNALQIS+E+ GK
Sbjct: 61  DPADAFPLWEFESDLLLSNLRISGKSSIDWSQTDQEYILQAELLEAWRNALQISIEEGGK 120

Query: 121 VLEISGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKI 180
           VLEISGQL+EQQRE    VDWR  NWWEHGFVRRLELPED D  R+EA++KND +LEIKI
Sbjct: 121 VLEISGQLREQQREGKTTVDWRRVNWWEHGFVRRLELPEDADSSRMEARIKNDLVLEIKI 180

Query: 181 PKLESNRGAESKSKD-SDQD 198
           PKLE+N+ +ESKSKD SD+D
Sbjct: 181 PKLETNQSSESKSKDNSDED 199

[Close]

BLAST of Carg24823 vs. TrEMBL
Match: tr|V4UMA5|V4UMA5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009527mg PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 6.7e-59
Identity = 116/198 (58.59%), Postives = 145/198 (73.23%), Query Frame = 0


Query: 3   TSKPQLEVHKADHSPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFFDPA 62
           TS  +LEVH  D +P KW VALGE+VF RF+ Q N  V K  G+GSLFSPLLFGKFFDP+
Sbjct: 2   TSCIKLEVHTDDRTPHKWIVALGEDVFRRFLSQGNPAVHKAFGDGSLFSPLLFGKFFDPS 61

Query: 63  DAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKVLEI 122
           DAFPLWEFESD+ +S L+S+G+SS+DW QTDQ YVL+AEL    +N +Q+SVE+GK++EI
Sbjct: 62  DAFPLWEFESDVLLSHLQSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEI 121

Query: 123 SGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKIPK-- 182
           SGQ KEQ+    K  DWR  +WWEHGFVRRLELPED D  + EA + ND  LEI+IPK  
Sbjct: 122 SGQWKEQRDPRAK--DWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 181

Query: 183 ----LESNRGAESKSKDS 195
               +    GA +K+ ++
Sbjct: 182 STCDISHGNGAATKNSEA 197

[Close]

BLAST of Carg24823 vs. TrEMBL
Match: tr|V4US93|V4US93_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009527mg PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 6.7e-59
Identity = 116/198 (58.59%), Postives = 145/198 (73.23%), Query Frame = 0


Query: 3   TSKPQLEVHKADHSPSKWSVALGEEVFSRFVGQPNSGVQKVLGEGSLFSPLLFGKFFDPA 62
           TS  +LEVH  D +P KW VALGE+VF RF+ Q N  V K  G+GSLFSPLLFGKFFDP+
Sbjct: 2   TSCIKLEVHTDDRTPHKWIVALGEDVFRRFLSQGNPAVHKAFGDGSLFSPLLFGKFFDPS 61

Query: 63  DAFPLWEFESDLFMSALRSSGKSSIDWFQTDQEYVLQAELQEPWRNALQISVEDGKVLEI 122
           DAFPLWEFESD+ +S L+S+G+SS+DW QTDQ YVL+AEL    +N +Q+SVE+GK++EI
Sbjct: 62  DAFPLWEFESDVLLSHLQSTGQSSVDWLQTDQAYVLKAELPGVGKNQVQVSVENGKIVEI 121

Query: 123 SGQLKEQQREATKLVDWRCANWWEHGFVRRLELPEDVDCCRIEAQMKNDTILEIKIPK-- 182
           SGQ KEQ+    K  DWR  +WWEHGFVRRLELPED D  + EA + ND  LEI+IPK  
Sbjct: 122 SGQWKEQRDPRAK--DWRSGHWWEHGFVRRLELPEDADWRKTEAYLSNDVFLEIRIPKNP 181

Query: 183 ----LESNRGAESKSKDS 195
               +    GA +K+ ++
Sbjct: 182 STCDISHGNGAATKNSEA 197

The following BLAST results are available for this feature:

BLAST of Carg24823 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985262.1	9.1e-108	97.47	21.7 kDa class VI heat shock protein [Cucurbita maxima]	[more]
XP_023520414.1	4.5e-107	96.97	21.7 kDa class VI heat shock protein [Cucurbita pepo subsp. pepo]	[more]
ADU55792.1	1.3e-82	78.39	HSP23.0 [Citrullus lanatus]	[more]
XP_004152915.1	1.5e-81	79.00	PREDICTED: 21.7 kDa class VI heat shock protein isoform X1 [Cucumis sativus] >KG...	[more]
XP_008463443.1	1.2e-80	78.00	PREDICTED: 21.7 kDa class VI heat shock protein [Cucumis melo]	[more]

BLAST of Carg24823 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54660.1	8.0e-50	50.83	HSP20-like chaperones superfamily protein	[more]
AT1G59860.1	2.1e-10	31.16	HSP20-like chaperones superfamily protein	[more]
AT1G53540.1	5.3e-09	29.22	HSP20-like chaperones superfamily protein	[more]
AT1G07400.1	9.0e-09	30.77	HSP20-like chaperones superfamily protein	[more]
AT3G46230.1	9.0e-09	27.92	heat shock protein 17.4	[more]

BLAST of Carg24823 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FIT9\|HS217_ARATH	1.4e-48	50.83	21.7 kDa class VI heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP21.7 ...	[more]
sp\|Q6AUW3\|HS223_ORYSJ	3.3e-37	43.78	22.3 kDa class VI heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
sp\|P31673\|HS174_ORYSJ	3.5e-10	29.93	17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
sp\|P27397\|HSP12_DAUCA	1.3e-09	30.23	18.0 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1	[more]
sp\|Q9XIE3\|HS17A_ARATH	3.9e-09	31.16	17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6...	[more]

BLAST of Carg24823 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|H6TB45\|H6TB45_CITLA	8.7e-83	78.39	HSP23.0 OS=Citrullus lanatus OX=3654 PE=2 SV=1	[more]
tr\|A0A0A0L6D5\|A0A0A0L6D5_CUCSA	9.6e-82	79.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081340 PE=3 SV=1	[more]
tr\|A0A1S3CJA6\|A0A1S3CJA6_CUCME	8.2e-81	78.00	21.7 kDa class VI heat shock protein OS=Cucumis melo OX=3656 GN=LOC103501614 PE=...	[more]
tr\|V4UMA5\|V4UMA5_9ROSI	6.7e-59	58.59	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009527mg PE=3 ...	[more]
tr\|V4US93\|V4US93_9ROSI	6.7e-59	58.59	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009527mg PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR031107	HSP20
IPR008978	HSP20-like_chaperone
IPR002068	A-crystallin/Hsp20_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24823-RA	Carg24823-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 88..185 e-value: 2.3E-11 score: 43.6
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 78..195 score: 13.049
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 51..190 e-value: 6.3E-20 score: 73.3
IPR008978	HSP20-like chaperone	SUPERFAMILY	SSF49764	HSP20-like chaperones	coord: 52..185
IPR031107	Small heat shock protein HSP20	PANTHER	PTHR11527	SMALL HEAT-SHOCK PROTEIN HSP20 FAMILY	coord: 11..193
None	No IPR available	PANTHER	PTHR11527:SF5	21.7 KDA CLASS VI HEAT SHOCK PROTEIN	coord: 11..193

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24823	Cla005275	Watermelon (97103) v1	carwmB0791
Carg24823	Csa3G081340	Cucumber (Chinese Long) v2	carcuB0809
Carg24823	MELO3C025424	Melon (DHL92) v3.5.1	carmeB0789
Carg24823	ClCG10G005700	Watermelon (Charleston Gray)	carwcgB0766
Carg24823	CSPI03G05380	Wild cucumber (PI 183967)	carcpiB0828
Carg24823	Cucsa.059700	Cucumber (Gy14) v1	carcgyB0904
Carg24823	CmaCh16G008470	Cucurbita maxima (Rimu)	carcmaB1099
Carg24823	CmoCh16G009150	Cucurbita moschata (Rifu)	carcmoB1069
Carg24823	Lsi05G006280	Bottle gourd (USVL1VR-Ls)	carlsiB729
Carg24823	Cp4.1LG00g00140	Cucurbita pepo (Zucchini)	carcpeB1109
Carg24823	CsGy3G005480	Cucumber (Gy14) v2	carcgybB0784
Carg24823	MELO3C025424.2	Melon (DHL92) v3.6.1	carmedB0801
Carg24823	CsaV3_3G005420	Cucumber (Chinese Long) v3	carcucB0832
Carg24823	Cla97C10G189920	Watermelon (97103) v2	carwmbB0829
Carg24823	Bhi11G000520	Wax gourd	carwgoB0927

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24823	Silver-seed gourd	carcarB567
Carg24823	Cucurbita maxima (Rimu)	carcmaB1100
Carg24823	Cucurbita moschata (Rifu)	carcmoB1070
Carg24823	Cucurbita pepo (Zucchini)	carcpeB1110