Carg24740 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24740
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Vesicle transport protein
Location	Cucurbita_argyrosperma_scaffold_259 : 124394 .. 128922 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCACAACCCAATTTCTGCTCCCAAATCAGAGCAAATCCTGACATTTTCTCGATTTTTTGAGCTTCGATTTGAAAGAAAGCGATGCTGAAAACGGCGCAGGGATGGTTCACGCAAGGGGATAGTAGTGGGAGTGATAATCAGGTCAAACCGACCTCTTCGTTGCTCGCCAGTTGGAATTCTTACGCAGAATCACAAGCTGCCGATGATAGCAGCTCCAATTCGAGAATCGGTTTCGATCTTGAAAGTGCTGTTAGGTCAGCGAATGAAACCGTTTCGGGAACTTTTAGCGTGTAAGTCTCCGATCGATCCTCATATCCATCTTAGCAAAGAATTTGAGATTGAATTTTGTATTTGTTTTCTGGATCGTTGGGTACTCGAGTTCTTGAGTAGTATCTGTTTGGTGTTGGGTAAATTTGCTGTAGTGTTGCTACTTTGGCTATGGCTGTTACATTTTTTCTTGAGCATGATTTGATTGGCTGGCTATGGGGAAGTTTGGGAAATGTTCTACCGTAGGCTCTTGGAATTTTGATTTGTCTTTTATTGTCATTTGAATTATTGAGATTTTCATTTAAGAATGTTGGATGTCTAGCATATGAACTTCCATTTGAGAATTAGAGAGTTAAGAATGGATCTGAAGAAACAAAGAATGTCATTATGGTTGCCAAACAGCGTGAAGAGAAATTCTCCTAAGGCTAGTTTGAATATAGCTTTACATGTTTGAAGGTCTTGATTGAATGTTTGGGCTAACCGATATTGTCCTCTTTGGGCTTTCTCTTTTGGACTTCCCTGGAAGGTTTTTAAAATGCGTCTACATTGTAAGAGTCGGTAAAATGACTCGTACTCCAAGTGTTTGAACTGGTTTTCAAAATGAATGGGAAATGGCTGGATGTTGTCCTTTGTAGTCTGCTAGCATTAGAATATTGAAAAATTTCCAACCAATCAAGTGACGTCTAAGGCGCGCGAAACCAAATTCTCAATCTCCTGCTACTAGAAACGCTTCCTGTCAAAGAAATTGAGCAATAAACCCTTAAACTCACAGATGGGATTGTGAGATCCCATGTCGGTAGGAGAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAAACCTTGAGGGAAAGCCCAAAGAGGACACTATCTACTATTGGTGGGCTTGGATCGTTACAAATGGTATCAGAGTCAGACACTGGGCAATGTCCCAGCGAGGAGGCTGAGGTTGAGCCCCAAAGGGGGTGGACACAAGGTGGTGTGCCAGCAAGGACTCTGAGCCCCGAAGGGGGTGGATTGGGGGTCCCACATCAATTGAAGAAGACAACGAGTGCCAGCGAGGACGTTAGGCCTCGAAGGGGGGAAGGGGGTGGATTGTGAGAACCCACATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGGATGTGAAAACCTCTCCCTAGTAGGCGCGTCTTAAAAACCTTGAGGGGTAGCTTGAAAGGGAAAGCCCAAATAGGACAATATCTGCTAGCGGTAGGCTTGGGCTGTTACAATAATCAATGTGTTTAAGGCTTCCGGATTCGCTCCAAAGAAAAACAACACCAGCAGAAGCACGAAATGAGTTTGAGGCCATCTTGTCAATATTTCTGAAGTTTCTAGGAGATTATTCACCTGTGTTTGGACACATCCCATAGAAGGGTTTCCTCCAAAAGGGACTACTTACGAACTAAAGGATAGTATACTTACGAACTAAAGGATAGTATCCTTTCTGATTGTTTTGTAATTTGATCCTTGTACAGGGTTTCTAAAGGAGTAAGAGAACTTCCTGGGAACCTCCAATCTGCCACTAGCAATGTACCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATTTTCATTGCGTTTGCATTGTTCCTCCCTATCATGGTTCTGGTGCCTCATAAGTTTGCTATCTGTTTTACCCTTGGGTGTTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCTAAGAATCAGCTTGCACATATGTTCTCAAAAGAGGTACCCTTGGTCGATGCTCCTTTTATTACATTTATACCGACACCGTCCCGATATTTTAGCTGATTCTATTCTGTTATTTGTTCCTTTGTTTCACAATGCAGAGACTTCCTTTTACGGTGATCTTTATTGGATGTATGTTTGGCACCTTGTACGTTTCAATGGGGCTCCACAGCTATATTCTCTCTGTTATCTTCTCTGTATTACAGGTATCTAAACACAAGGCCTCTTCTTTCTTCATTATTCTACAAAATTTTATTCCCATATTGCAGTTAGTATCTTTTTACTTCAGAATTGTTTATTTATTTTTTTATTTTAGAAGAAACAATATTGGTTGAATTACAAGTTTAGTCCATGAACGTTCGAGCTTGTGTTTGAAAGTTCCTTGAAGTTTAAAAAATATCTAATAGGCCGGTGAACTTTTAATTCTGTATCTAAAAGGTTCTTGAACTTTGAAACTGTCTCATAAGTTCAGTGACTAATAGGGAGTTGAACTGCACAATCACACAAAACATTAGATTTATCTTCCAAACTTTATTCCAGCCATAAATCCACCTTTGAGGAAAGCATATGGACAAAACGAGCTCACTTAAGATGAAAAGCCAAGTTTTGAGTGAACTCACAGTGGATGATCTCGCTGTCTTAGTAGCGTTGGCAGCAGAGCAAGGGGCCGGGTGTCCAGTAGGGAGCTTTTCTTTGCACCTTATTAGCAGTGTTCAAGCTTCTACAGATCTTCGACTAAAAGAATTTCAACTTTTCTGGGACTTTAAGCCTCCAAATGTAGTCCATCAGAGGGCTTCAACTTTGCTTCAGGTTTAGTAAGGTGAACGAAGGCTGACTGATTTTGCTGGAAAACCATCCTAAGCCTTTAGCTTCCAATAATGCTGTTTTGATCCATCCCAATTTGAACAGCATTGTAACAACCCAAGTCCACCGCTAGCAGAGAGTGCCCTCTTTGCTTTCCCTTTCGGGCTTTCTCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAGGTTTTCACGCCCTTATAAAGAATGCTTCGTTCTCTTCTCCAATCGATGTGGGATCTCACAATCCATCCCCCTTTGGGGCCCAGCGTCCTTGCTGGCACACCGCCCGGTATCTCACATCGATTGGAGAGGGGAACAAGTGCCAACGAGGACACTGAGACCCGAAGATGGGTGGATTGTGAGATCCCATATTGATTGGAGAGGAGAACGAAGCATTCTTTAAAAGGGTTTGGAAACCTCTCCCTAACAAACGTATTTTAAAAACCTTGAGGGGAAGCCCAAAAAGATAAACCCAAGGAGGACAATATCTGTTAGCGGTCGATTTGGGCCGTTACAATCCAGCTTCTCTGTAAGTTCAGCCCACTTCATTACCTCTCTATTGAATAATCTTCTTTTCCTAGATTCCAAGTCTAATGGACATCATCCCGACAATCAATCTGCAGTGGTCGACCCCTTTTTTTGAAGTTCATGCATAGAACTCCGAGAAGAGAGAGGACTCACCCGACTATTTTGTTTATGATTATCCTCCTGGCTCACATAGTTCTGCACCACATGCACGTCAATTTCAACCTATAACATATTGGTAGGAAGGTTATTAGGGTATTATTGTTTGTTGGTTACAAATAGAGGGGCGGGGAATGAGGAAGCTTGAGAGTAATCTCCAGAAGGGAAAGTCCAAATATCTCAAAACACTTCGTTTAACTTGTAGTTCTGATATGTTTTACATTTCAATACATTCGAGTTCTATCACATATTAAAGGTACATTTCATATCTACCGCGTTCTTTATCATACACGACACAAATGGTCCGATTTTGAAACGTTATGATTCCTCCAGGTTCTTGCACTTGCATACTATGCTGTTTCATATTTCCCTGGTGGGTCTACTGGGATGAAGTTTTTGTCATCCGCTCTTATGTCTTCGGTTATGAAATGTTTTGGTAGTTGATCTCGACTCCAACGTGGCATACGCTAGGTGCACTGCACATTTCTCTTCTGATTAGAGATCTTTGTTAACGTTCGGGAAGTCTGGGAAACGATCCACAACATATTGCTGAGTGTGTAAACTAAAAGTATTAGCTACAGACACCCATTTTTGTGTTCTCTGGTTGTTTCATCCCCATCATCATATTGACTGAGCTATTCAGCAACTGTAGATGAAGGTGGTGTGAAGGCCTTGGGGCATTGTTATTTTCTTCCTATCACAATTTGAGGCACTAGAGAATGAAAAGCTAGAGTACTTCATCCCCTTCATCCCGCTTCTTTCTTATTATATATTGTCGTTTTTTTCGTGAAAATGTTACCTATCTCTCTCCTAACTATCGTGCTAAATGTATTATTAATTTTTTTAGTTCACTATTCGAGAGTGCGGAGTAAATAGTGATGTCTTATCTATTAAATTACGCTTGGTTGACAAGTTCATGTATTCAATTGATCAATAGTATAATGATTTGTACTAT

mRNA sequence

TTCCACAACCCAATTTCTGCTCCCAAATCAGAGCAAATCCTGACATTTTCTCGATTTTTTGAGCTTCGATTTGAAAGAAAGCGATGCTGAAAACGGCGCAGGGATGGTTCACGCAAGGGGATAGTAGTGGGAGTGATAATCAGGTCAAACCGACCTCTTCGTTGCTCGCCAGTTGGAATTCTTACGCAGAATCACAAGCTGCCGATGATAGCAGCTCCAATTCGAGAATCGGTTTCGATCTTGAAAGTGCTGTTAGGTCAGCGAATGAAACCGTTTCGGGAACTTTTAGCGTGGTTTCTAAAGGAGTAAGAGAACTTCCTGGGAACCTCCAATCTGCCACTAGCAATGTACCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATTTTCATTGCGTTTGCATTGTTCCTCCCTATCATGGTTCTGGTGCCTCATAAGTTTGCTATCTGTTTTACCCTTGGGTGTTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCTAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACGGTGATCTTTATTGGATGTATGTTTGGCACCTTGTACGTTTCAATGGGGCTCCACAGCTATATTCTCTCTGTTATCTTCTCTGTATTACAGGTTCTTGCACTTGCATACTATGCTGTTTCATATTTCCCTGGTGGGTCTACTGGGATGAAGTTTTTGTCATCCGCTCTTATGTCTTCGGTTATGAAATGTTTTGGTAGTTGATCTCGACTCCAACGTGGCATACGCTAGGTGCACTGCACATTTCTCTTCTGATTAGAGATCTTTGTTAACGTTCGGGAAGTCTGGGAAACGATCCACAACATATTGCTGAGTGTGTAAACTAAAAGTATTAGCTACAGACACCCATTTTTGTGTTCTCTGGTTGTTTCATCCCCATCATCATATTGACTGAGCTATTCAGCAACTGTAGATGAAGGTGGTGTGAAGGCCTTGGGGCATTGTTATTTTCTTCCTATCACAATTTGAGGCACTAGAGAATGAAAAGCTAGAGTACTTCATCCCCTTCATCCCGCTTCTTTCTTATTATATATTGTCGTTTTTTTCGTGAAAATGTTACCTATCTCTCTCCTAACTATCGTGCTAAATGTATTATTAATTTTTTTAGTTCACTATTCGAGAGTGCGGAGTAAATAGTGATGTCTTATCTATTAAATTACGCTTGGTTGACAAGTTCATGTATTCAATTGATCAATAGTATAATGATTTGTACTAT

Coding sequence (CDS)

ATGCTGAAAACGGCGCAGGGATGGTTCACGCAAGGGGATAGTAGTGGGAGTGATAATCAGGTCAAACCGACCTCTTCGTTGCTCGCCAGTTGGAATTCTTACGCAGAATCACAAGCTGCCGATGATAGCAGCTCCAATTCGAGAATCGGTTTCGATCTTGAAAGTGCTGTTAGGTCAGCGAATGAAACCGTTTCGGGAACTTTTAGCGTGGTTTCTAAAGGAGTAAGAGAACTTCCTGGGAACCTCCAATCTGCCACTAGCAATGTACCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATTTTCATTGCGTTTGCATTGTTCCTCCCTATCATGGTTCTGGTGCCTCATAAGTTTGCTATCTGTTTTACCCTTGGGTGTTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCTAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACGGTGATCTTTATTGGATGTATGTTTGGCACCTTGTACGTTTCAATGGGGCTCCACAGCTATATTCTCTCTGTTATCTTCTCTGTATTACAGGTTCTTGCACTTGCATACTATGCTGTTTCATATTTCCCTGGTGGGTCTACTGGGATGAAGTTTTTGTCATCCGCTCTTATGTCTTCGGTTATGAAATGTTTTGGTAGTTGA

Protein sequence

MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSANETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATGVFFIFIAFALFLPIMVLVPHKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMGLHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFGS

Homology

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BLAST of Carg24740 vs. NCBI nr
Match: XP_022937297.1 (protein transport protein SFT2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 343.6 bits (880), Expect = 5.2e-91
Identity = 228/230 (99.13%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA 60
           MLKTAQGWFTQGDSSGSDNQVKPTSSLLA+WNSYAESQAADDSSSNSRIGFDLE+AVRSA
Sbjct: 1   MLKTAQGWFTQGDSSGSDNQVKPTSSLLANWNSYAESQAADDSSSNSRIGFDLENAVRSA 60

Query: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120
           NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX
Sbjct: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180
           XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180

Query: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFGS 231
           LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFGS
Sbjct: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFGS 230

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BLAST of Carg24740 vs. NCBI nr
Match: XP_022976009.1 (protein transport protein SFT2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 6.8e-91
Identity = 228/230 (99.13%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA 60
           MLKTAQGWFTQGDSSGSDNQVKP+SSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA
Sbjct: 1   MLKTAQGWFTQGDSSGSDNQVKPSSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA 60

Query: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120
           NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX
Sbjct: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180
           XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180

Query: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFGS 231
           LH+YILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFGS
Sbjct: 181 LHNYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFGS 230

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BLAST of Carg24740 vs. NCBI nr
Match: XP_023536553.1 (protein transport protein SFT2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.1 bits (858), Expect = 1.9e-88
Identity = 224/230 (97.39%), Postives = 228/230 (99.13%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA 60
           MLKTAQGWFTQGDSSGSD+QVKP+SSLLASWNSYAESQAADDS SNSRIGFDLESAVRSA
Sbjct: 1   MLKTAQGWFTQGDSSGSDDQVKPSSSLLASWNSYAESQAADDSISNSRIGFDLESAVRSA 60

Query: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120
           NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX
Sbjct: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180
           XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180

Query: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFGS 231
           LHSYILSVIFSVLQVLALAYYAVSYFPGGS GMKFL+SAL+SSVMKCFGS
Sbjct: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSIGMKFLTSALVSSVMKCFGS 230

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BLAST of Carg24740 vs. NCBI nr
Match: XP_004139775.1 (PREDICTED: protein transport protein SFT2-like [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 1.6e-79
Identity = 209/229 (91.27%), Postives = 212/229 (92.58%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA 60
           M K AQGWFTQG SSGSDNQ+K +SSLLA WNSYAESQAADDS+ N  IG DLESAVRSA
Sbjct: 1   MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNLGIGLDLESAVRSA 60

Query: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120
           NETVSGTFSVVSKGVRELPGN QSATSNVPSGKALMYFGLFLAT XXXXXXXXXXXXXXX
Sbjct: 61  NETVSGTFSVVSKGVRELPGNFQSATSNVPSGKALMYFGLFLATGXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180
           XXXXXXXXXXXXXXXXXXXXXXX LKGPKNQLAHMFSKERLPFTVIFIG M GTLYVSMG
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXALKGPKNQLAHMFSKERLPFTVIFIGSMLGTLYVSMG 180

Query: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFG 230
           LHSYILSV FSVLQVLALAYYAVSYFPGGSTGMKFLSSAL SSV KCFG
Sbjct: 181 LHSYILSVFFSVLQVLALAYYAVSYFPGGSTGMKFLSSALTSSVTKCFG 229

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BLAST of Carg24740 vs. NCBI nr
Match: XP_022981600.1 (protein transport protein SFT2 [Cucurbita maxima])

HSP 1 Score: 305.4 bits (781), Expect = 1.6e-79
Identity = 206/229 (89.96%), Postives = 214/229 (93.45%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA 60
           M K AQGWFTQG +SGSDNQ+K +SSLLA WNSYAESQA++DSSSN  IGFDLESAVRSA
Sbjct: 1   MQKAAQGWFTQGGNSGSDNQLKSSSSLLADWNSYAESQASEDSSSNLGIGFDLESAVRSA 60

Query: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120
           NETVSGTFSVVSKGVRELPGN QSATSNVPSGKALMYFGLFLAT XXXXXXXXXXXXXXX
Sbjct: 61  NETVSGTFSVVSKGVRELPGNFQSATSNVPSGKALMYFGLFLATGXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180
           XXXXXXXXXXXXXXXXXXXXXXX LKGP+NQLAHMFSKERLPFT IFIG M GTLYVSMG
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXALKGPQNQLAHMFSKERLPFTAIFIGSMLGTLYVSMG 180

Query: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFG 230
           LHSY+LSV FSVLQVLALAYYAVSYFPGGSTGMKFLSSAL SSVM+CFG
Sbjct: 181 LHSYVLSVFFSVLQVLALAYYAVSYFPGGSTGMKFLSSALTSSVMRCFG 229

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BLAST of Carg24740 vs. TAIR10
Match: AT4G26550.1 (Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 228.0 bits (580), Expect = 5.8e-60
Identity = 131/225 (58.22%), Postives = 152/225 (67.56%), Query Frame = 0


Query: 5   AQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSANETV 64
           +QGWF+ G SS  D Q +  SSLLA WNSYA S+  D   S    GFD+ESAVRSAN+TV
Sbjct: 2   SQGWFSMGGSSTVDQQQQSGSSLLADWNSYAASR--DFEESGGSFGFDIESAVRSANDTV 61

Query: 65  SGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXXXXXX 124
           SGTFSVVSKGVR++PG+LQSATS++PSGKALMYFGL LA+                    
Sbjct: 62  SGTFSVVSKGVRDIPGSLQSATSSMPSGKALMYFGLLLASGVFFIFIAFTMFLPVMVLMP 121

Query: 125 XXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMGLHSY 184
                               L+GPKNQLAHM S ERLP T+ FI  M GT+YVSM LHSY
Sbjct: 122 QKFAICFTLGCGFIIGSFFALRGPKNQLAHMSSMERLPSTLGFIATMVGTIYVSMVLHSY 181

Query: 185 ILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFG 230
           ILSV+FSVLQVLAL YY +SYFPGGS+GM+FLSSAL SS ++ FG
Sbjct: 182 ILSVLFSVLQVLALVYYCISYFPGGSSGMRFLSSALTSSALRVFG 224

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BLAST of Carg24740 vs. TAIR10
Match: AT5G56020.1 (Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 211.5 bits (537), Expect = 5.6e-55
Identity = 130/234 (55.56%), Postives = 150/234 (64.10%), Query Frame = 0


Query: 1   MLKTAQGWF-TQGDSSGSDNQVKPT----SSLLASWNSYAESQAADDSSSNSRIGFDLES 60
           M K A+GWF   G SS  D Q +P     +SLLA WNSYA S+  D       +GFD+ES
Sbjct: 1   MEKMAKGWFPMSGTSSSGDQQQQPLQTGGTSLLADWNSYAASR--DFEEDTGTLGFDIES 60

Query: 61  AVRSANETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXX 120
           AVRSAN+TVSGTF+VVSKGVR+   NLQSATS++PSGKALMYFGL LA+           
Sbjct: 61  AVRSANDTVSGTFNVVSKGVRD---NLQSATSSMPSGKALMYFGLLLASGVFFIFIAFTM 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTL 180
                                        L+GP+NQLAHM S ERLP T+ FI  M GT+
Sbjct: 121 FLPVMVLMPQKFAICFTLGCGFIIGSFFALRGPQNQLAHMSSAERLPLTLGFIATMVGTI 180

Query: 181 YVSMGLHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFG 230
           YVSM LHSYILSVIFS LQV+ALAYY +SYFPGGS+GMKFLSS L SSV + FG
Sbjct: 181 YVSMVLHSYILSVIFSALQVIALAYYCISYFPGGSSGMKFLSSTLTSSVFRMFG 229

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BLAST of Carg24740 vs. TAIR10
Match: AT5G24170.1 (Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05
Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 145 LKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMGLHSYILSVIFSVLQVLALAYYAVS 204
           L GP+ Q++ MF   R   T I+IGC+   L  ++ +HS IL+V+  + ++ AL +Y++S
Sbjct: 83  LMGPEQQMSMMFDPVRFLATSIYIGCVVVALICALLIHSKILTVLAILCEICALIWYSLS 142

Query: 205 YFP 208
           Y P
Sbjct: 143 YIP 145

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BLAST of Carg24740 vs. Swiss-Prot
Match: sp|P38166|SFT2_YEAST (Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SFT2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-10
Identity = 32/79 (40.51%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 145 LKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMGLHSYILSVIFSVLQVLALAYYAVS 204
           L GP   L H+ ++ERLPF++ F    F T+Y +    + +L++  ++L+++A+ YYA+S
Sbjct: 130 LMGPLAYLKHLTARERLPFSMFFFATCFMTIYFAAFSKNTVLTITCALLELVAVIYYAIS 189

Query: 205 YFPGGSTGMKFLSSALMSS 224
           YFP G+TG++ LSSA ++S
Sbjct: 190 YFPFGATGLRMLSSAGVNS 208

[Close]

BLAST of Carg24740 vs. Swiss-Prot
Match: sp|Q8WV19|SFT2A_HUMAN (Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.3e-04
Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 145 LKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMGLHSYILSVIFSVLQVLALAYYAVS 204
           L GP  QL  MF   RL  T++ + C   TL  ++  H   L+V+F +LQ L++ +Y++S
Sbjct: 82  LMGPVKQLKKMFEATRLLATIVMLLCFIFTLCAALWWHKKGLAVLFCILQFLSMTWYSLS 141

Query: 205 YFPGGSTGMKFLSSALMS 223
           Y P     +    S+L+S
Sbjct: 142 YIPYARDAVIKCCSSLLS 159

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BLAST of Carg24740 vs. TrEMBL
Match: tr|A0A2P6QLH8|A0A2P6QLH8_ROSCH (Vesicle transport protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0075471 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.3e-66
Identity = 149/229 (65.07%), Postives = 163/229 (71.18%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA 60
           M K AQ WF+ G +    +  +P SSLLA WNSYA SQ+A+DSSS S +GFDLESAVRSA
Sbjct: 1   MQKMAQEWFSGGSTGAGGDSQQPASSLLADWNSYAASQSAEDSSS-SALGFDLESAVRSA 60

Query: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120
           N+TVSGTFSVVSKGVR+LPGNLQSATS+VPSGKALMYFGLFLAT                
Sbjct: 61  NDTVSGTFSVVSKGVRDLPGNLQSATSSVPSGKALMYFGLFLATGVFFVFIAFTMFLPVM 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180
                                   LKGPKNQ  HM SKERLPFT+ F+G M GT+YVSM 
Sbjct: 121 VLMPQKFAICFTLGCAFIIGSFFALKGPKNQFVHMSSKERLPFTLGFLGSMVGTIYVSMV 180

Query: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFG 230
           LHSYILSV FSVLQVLALAYYAVSYFPGGS G+KFLSSAL SSVMKCFG
Sbjct: 181 LHSYILSVFFSVLQVLALAYYAVSYFPGGSAGLKFLSSALTSSVMKCFG 228

[Close]

BLAST of Carg24740 vs. TrEMBL
Match: tr|M5VZZ5|M5VZZ5_PRUPE (Vesicle transport protein OS=Prunus persica OX=3760 GN=PRUPE_6G028800 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 5.6e-65
Identity = 148/229 (64.63%), Postives = 164/229 (71.62%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA 60
           M K AQ WF+Q   SG+D+    +SSLLA WNSYA SQ+ D+SSS   +GFDLESAVRSA
Sbjct: 1   MQKMAQEWFSQ-SGSGADDSQNTSSSLLADWNSYAASQSTDESSSLG-LGFDLESAVRSA 60

Query: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120
           N+TVSGTFSVVSKGVR+LPGNLQSATS VPSGKALMYFGLFLAT                
Sbjct: 61  NDTVSGTFSVVSKGVRDLPGNLQSATSTVPSGKALMYFGLFLATGVFFVFIAFTMFLPVM 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180
                                   LKGPKNQLAHM S+ERLPFT  F+G M GT+YVSM 
Sbjct: 121 VLMPQKFAICFTLGCAFIIASFFALKGPKNQLAHMSSRERLPFTFGFLGSMAGTIYVSMV 180

Query: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFG 230
           LHSYILSV+FSV+QVLALAYYAVSYFPGGS G+KFLSSAL SSVM+CFG
Sbjct: 181 LHSYILSVLFSVIQVLALAYYAVSYFPGGSAGLKFLSSALTSSVMRCFG 227

[Close]

BLAST of Carg24740 vs. TrEMBL
Match: tr|W9RMJ7|W9RMJ7_9ROSA (Vesicle transport protein OS=Morus notabilis OX=981085 GN=L484_020215 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.2e-64
Identity = 144/229 (62.88%), Postives = 163/229 (71.18%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSA 60
           M K AQ WFTQ  S G+D   KP+SSLLA WNSYA S +  D +S+  +GFDLE+AVRSA
Sbjct: 1   MQKMAQEWFTQSVSDGADVSEKPSSSLLADWNSYAASHS--DENSSLPLGFDLEAAVRSA 60

Query: 61  NETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXXXX 120
           N+TVSGTFSVVSKGVR++PGNLQSATS+VPSGKALMYFGLFLAT                
Sbjct: 61  NDTVSGTFSVVSKGVRDIPGNLQSATSSVPSGKALMYFGLFLATGVFFVFLAFTMFLPVM 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMG 180
                                   LKGPKNQLAHM SKERLPFT+ F+G M GT+YVSM 
Sbjct: 121 VIMPQKFAICFTLGCGFIIGSFFALKGPKNQLAHMSSKERLPFTLGFLGSMVGTIYVSMV 180

Query: 181 LHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFG 230
           LHSYILSV+FSV+QVLALAYYA SYFPGGS G+KFLSS L S+V+KCFG
Sbjct: 181 LHSYILSVLFSVIQVLALAYYAFSYFPGGSAGLKFLSSTLTSTVLKCFG 227

[Close]

BLAST of Carg24740 vs. TrEMBL
Match: tr|B9T1Q6|B9T1Q6_RICCO (Vesicle transport protein OS=Ricinus communis OX=3988 GN=RCOM_0104790 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.8e-64
Identity = 144/231 (62.34%), Postives = 164/231 (71.00%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKP--TSSLLASWNSYAESQAADDSSSNSRIGFDLESAVR 60
           M K AQGWF+   +SG D Q KP  +SSLLA WNSYA SQ AD+SS    IGFDLE+ VR
Sbjct: 1   MQKMAQGWFSSSGTSGEDQQQKPQSSSSLLADWNSYAASQDADESSGLG-IGFDLEAVVR 60

Query: 61  SANETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXXX 120
           SAN++VSGTF+VVSKGVR++PG+ QSATSN+PSGKALMYFGLFLAT              
Sbjct: 61  SANDSVSGTFNVVSKGVRDIPGSFQSATSNIPSGKALMYFGLFLATGVFFVFIAFALFLP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVS 180
                                     LKGPKNQ AHM SKERLPFT+ FIG M GT+YVS
Sbjct: 121 VIVLMPQKFAICFTLGCVFIIASFVALKGPKNQFAHMTSKERLPFTLGFIGSMAGTIYVS 180

Query: 181 MGLHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFG 230
           M LHSYILSV+FSV+QVLALAYYA+SYFPGGS GMKFLSS+L+SSV +CFG
Sbjct: 181 MVLHSYILSVLFSVIQVLALAYYAISYFPGGSAGMKFLSSSLISSVTRCFG 230

[Close]

BLAST of Carg24740 vs. TrEMBL
Match: tr|A0A1D1XSP2|A0A1D1XSP2_9ARAE (Vesicle transport protein OS=Anthurium amnicola OX=1678845 GN=SFT2_0 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 138/232 (59.48%), Postives = 166/232 (71.55%), Query Frame = 0


Query: 1   MLKTAQGWFTQGDSSGSDNQVKPTS---SLLASWNSYAESQAADDSSSNSRIGFDLESAV 60
           M KT QGWF+ G ++G  +    +S   SLL+ WNSYA S++A+D++++  +GFD+E+AV
Sbjct: 1   MQKTVQGWFSGGPTAGDQHNPSSSSASPSLLSDWNSYAASKSAEDAAASPALGFDIEAAV 60

Query: 61  RSANETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATXXXXXXXXXXXXX 120
           R+AN+ V+GTF+VVSKGVRELPG+ QSATSNVPSGK+LMYFGL LAT             
Sbjct: 61  RTANDKVAGTFNVVSKGVRELPGSFQSATSNVPSGKSLMYFGLLLATGIFFIFIAFTMFL 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXLKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYV 180
                                      LKGPKNQLAHMFSKERLPFT+ FIG M GT+YV
Sbjct: 121 PVMVLMPQKFAICFTVGCAFIIGSFCALKGPKNQLAHMFSKERLPFTLGFIGSMVGTIYV 180

Query: 181 SMGLHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFG 230
           SM LHSYILSV+FSVLQVLAL+YYA+SYFPGGSTG+KFLSS L SSVMKCFG
Sbjct: 181 SMMLHSYILSVLFSVLQVLALSYYAISYFPGGSTGLKFLSSTLTSSVMKCFG 232

The following BLAST results are available for this feature:

BLAST of Carg24740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937297.1	5.2e-91	99.13	protein transport protein SFT2-like isoform X1 [Cucurbita moschata]	[more]
XP_022976009.1	6.8e-91	99.13	protein transport protein SFT2-like isoform X1 [Cucurbita maxima]	[more]
XP_023536553.1	1.9e-88	97.39	protein transport protein SFT2-like [Cucurbita pepo subsp. pepo]	[more]
XP_004139775.1	1.6e-79	91.27	PREDICTED: protein transport protein SFT2-like [Cucumis sativus]	[more]
XP_022981600.1	1.6e-79	89.96	protein transport protein SFT2 [Cucurbita maxima]	[more]

BLAST of Carg24740 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26550.1	5.8e-60	58.22	Got1/Sft2-like vescicle transport protein family	[more]
AT5G56020.1	5.6e-55	55.56	Got1/Sft2-like vescicle transport protein family	[more]
AT5G24170.1	1.4e-05	38.10	Got1/Sft2-like vescicle transport protein family	[more]

BLAST of Carg24740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P38166\|SFT2_YEAST	9.0e-10	40.51	Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	[more]
sp\|Q8WV19\|SFT2A_HUMAN	3.3e-04	34.62	Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1	[more]

BLAST of Carg24740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P6QLH8\|A0A2P6QLH8_ROSCH	1.3e-66	65.07	Vesicle transport protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0075471 PE...	[more]
tr\|M5VZZ5\|M5VZZ5_PRUPE	5.6e-65	64.63	Vesicle transport protein OS=Prunus persica OX=3760 GN=PRUPE_6G028800 PE=3 SV=1	[more]
tr\|W9RMJ7\|W9RMJ7_9ROSA	1.2e-64	62.88	Vesicle transport protein OS=Morus notabilis OX=981085 GN=L484_020215 PE=3 SV=1	[more]
tr\|B9T1Q6\|B9T1Q6_RICCO	2.8e-64	62.34	Vesicle transport protein OS=Ricinus communis OX=3988 GN=RCOM_0104790 PE=3 SV=1	[more]
tr\|A0A1D1XSP2\|A0A1D1XSP2_9ARAE	1.4e-63	59.48	Vesicle transport protein OS=Anthurium amnicola OX=1678845 GN=SFT2_0 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport

Vocabulary: **INTERPRO**
Term	Definition
IPR011691	Vesicle_transpt_SFT2
IPR007305	Vesicle_transpt_Got1/SFT2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24740-RA	Carg24740-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007305	Vesicle transport protein, Got1/SFT2-like	PFAM	PF04178	Got1	coord: 105..217 e-value: 7.6E-32 score: 110.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR23137:SF10	SUBFAMILY NOT NAMED	coord: 6..229
IPR011691	Vesicle transport protein SFT2	PANTHER	PTHR23137	UNCHARACTERIZED	coord: 6..229

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24740	Cla003334	Watermelon (97103) v1	carwmB0428
Carg24740	Csa7G200820	Cucumber (Chinese Long) v2	carcuB0464
Carg24740	MELO3C013189	Melon (DHL92) v3.5.1	carmeB0439
Carg24740	ClCG09G021560	Watermelon (Charleston Gray)	carwcgB0423
Carg24740	CSPI07G09460	Wild cucumber (PI 183967)	carcpiB0469
Carg24740	CmaCh01G010590	Cucurbita maxima (Rimu)	carcmaB0602
Carg24740	CmoCh01G011000	Cucurbita moschata (Rifu)	carcmoB0587
Carg24740	Lsi02G018060	Bottle gourd (USVL1VR-Ls)	carlsiB391
Carg24740	Cp4.1LG06g08250	Cucurbita pepo (Zucchini)	carcpeB0608
Carg24740	Cp4.1LG02g00350	Cucurbita pepo (Zucchini)	carcpeB0607
Carg24740	CsGy7G009090	Cucumber (Gy14) v2	carcgybB0440
Carg24740	MELO3C013189.2	Melon (DHL92) v3.6.1	carmedB0442
Carg24740	CsaV3_7G021580	Cucumber (Chinese Long) v3	carcucB0464
Carg24740	Cla97C09G182970	Watermelon (97103) v2	carwmbB0455
Carg24740	Bhi09G001512	Wax gourd	carwgoB0519

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24740	Carg23347	Silver-seed gourd	carcarB088

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24740	Cucurbita maxima (Rimu)	carcmaB0601
Carg24740	Cucurbita moschata (Rifu)	carcmoB0586