Carg24740-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCCACAACCCAATTTCTGCTCCCAAATCAGAGCAAATCCTGACATTTTCTCGATTTTTTGAGCTTCGATTTGAAAGAAAGCGATGCTGAAAACGGCGCAGGGATGGTTCACGCAAGGGGATAGTAGTGGGAGTGATAATCAGGTCAAACCGACCTCTTCGTTGCTCGCCAGTTGGAATTCTTACGCAGAATCACAAGCTGCCGATGATAGCAGCTCCAATTCGAGAATCGGTTTCGATCTTGAAAGTGCTGTTAGGTCAGCGAATGAAACCGTTTCGGGAACTTTTAGCGTGTAAGTCTCCGATCGATCCTCATATCCATCTTAGCAAAGAATTTGAGATTGAATTTTGTATTTGTTTTCTGGATCGTTGGGTACTCGAGTTCTTGAGTAGTATCTGTTTGGTGTTGGGTAAATTTGCTGTAGTGTTGCTACTTTGGCTATGGCTGTTACATTTTTTCTTGAGCATGATTTGATTGGCTGGCTATGGGGAAGTTTGGGAAATGTTCTACCGTAGGCTCTTGGAATTTTGATTTGTCTTTTATTGTCATTTGAATTATTGAGATTTTCATTTAAGAATGTTGGATGTCTAGCATATGAACTTCCATTTGAGAATTAGAGAGTTAAGAATGGATCTGAAGAAACAAAGAATGTCATTATGGTTGCCAAACAGCGTGAAGAGAAATTCTCCTAAGGCTAGTTTGAATATAGCTTTACATGTTTGAAGGTCTTGATTGAATGTTTGGGCTAACCGATATTGTCCTCTTTGGGCTTTCTCTTTTGGACTTCCCTGGAAGGTTTTTAAAATGCGTCTACATTGTAAGAGTCGGTAAAATGACTCGTACTCCAAGTGTTTGAACTGGTTTTCAAAATGAATGGGAAATGGCTGGATGTTGTCCTTTGTAGTCTGCTAGCATTAGAATATTGAAAAATTTCCAACCAATCAAGTGACGTCTAAGGCGCGCGAAACCAAATTCTCAATCTCCTGCTACTAGAAACGCTTCCTGTCAAAGAAATTGAGCAATAAACCCTTAAACTCACAGATGGGATTGTGAGATCCCATGTCGGTAGGAGAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAAACCTTGAGGGAAAGCCCAAAGAGGACACTATCTACTATTGGTGGGCTTGGATCGTTACAAATGGTATCAGAGTCAGACACTGGGCAATGTCCCAGCGAGGAGGCTGAGGTTGAGCCCCAAAGGGGGTGGACACAAGGTGGTGTGCCAGCAAGGACTCTGAGCCCCGAAGGGGGTGGATTGGGGGTCCCACATCAATTGAAGAAGACAACGAGTGCCAGCGAGGACGTTAGGCCTCGAAGGGGGGAAGGGGGTGGATTGTGAGAACCCACATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGGATGTGAAAACCTCTCCCTAGTAGGCGCGTCTTAAAAACCTTGAGGGGTAGCTTGAAAGGGAAAGCCCAAATAGGACAATATCTGCTAGCGGTAGGCTTGGGCTGTTACAATAATCAATGTGTTTAAGGCTTCCGGATTCGCTCCAAAGAAAAACAACACCAGCAGAAGCACGAAATGAGTTTGAGGCCATCTTGTCAATATTTCTGAAGTTTCTAGGAGATTATTCACCTGTGTTTGGACACATCCCATAGAAGGGTTTCCTCCAAAAGGGACTACTTACGAACTAAAGGATAGTATACTTACGAACTAAAGGATAGTATCCTTTCTGATTGTTTTGTAATTTGATCCTTGTACAGGGTTTCTAAAGGAGTAAGAGAACTTCCTGGGAACCTCCAATCTGCCACTAGCAATGTACCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATTTTCATTGCGTTTGCATTGTTCCTCCCTATCATGGTTCTGGTGCCTCATAAGTTTGCTATCTGTTTTACCCTTGGGTGTTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCTAAGAATCAGCTTGCACATATGTTCTCAAAAGAGGTACCCTTGGTCGATGCTCCTTTTATTACATTTATACCGACACCGTCCCGATATTTTAGCTGATTCTATTCTGTTATTTGTTCCTTTGTTTCACAATGCAGAGACTTCCTTTTACGGTGATCTTTATTGGATGTATGTTTGGCACCTTGTACGTTTCAATGGGGCTCCACAGCTATATTCTCTCTGTTATCTTCTCTGTATTACAGGTATCTAAACACAAGGCCTCTTCTTTCTTCATTATTCTACAAAATTTTATTCCCATATTGCAGTTAGTATCTTTTTACTTCAGAATTGTTTATTTATTTTTTTATTTTAGAAGAAACAATATTGGTTGAATTACAAGTTTAGTCCATGAACGTTCGAGCTTGTGTTTGAAAGTTCCTTGAAGTTTAAAAAATATCTAATAGGCCGGTGAACTTTTAATTCTGTATCTAAAAGGTTCTTGAACTTTGAAACTGTCTCATAAGTTCAGTGACTAATAGGGAGTTGAACTGCACAATCACACAAAACATTAGATTTATCTTCCAAACTTTATTCCAGCCATAAATCCACCTTTGAGGAAAGCATATGGACAAAACGAGCTCACTTAAGATGAAAAGCCAAGTTTTGAGTGAACTCACAGTGGATGATCTCGCTGTCTTAGTAGCGTTGGCAGCAGAGCAAGGGGCCGGGTGTCCAGTAGGGAGCTTTTCTTTGCACCTTATTAGCAGTGTTCAAGCTTCTACAGATCTTCGACTAAAAGAATTTCAACTTTTCTGGGACTTTAAGCCTCCAAATGTAGTCCATCAGAGGGCTTCAACTTTGCTTCAGGTTTAGTAAGGTGAACGAAGGCTGACTGATTTTGCTGGAAAACCATCCTAAGCCTTTAGCTTCCAATAATGCTGTTTTGATCCATCCCAATTTGAACAGCATTGTAACAACCCAAGTCCACCGCTAGCAGAGAGTGCCCTCTTTGCTTTCCCTTTCGGGCTTTCTCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAGGTTTTCACGCCCTTATAAAGAATGCTTCGTTCTCTTCTCCAATCGATGTGGGATCTCACAATCCATCCCCCTTTGGGGCCCAGCGTCCTTGCTGGCACACCGCCCGGTATCTCACATCGATTGGAGAGGGGAACAAGTGCCAACGAGGACACTGAGACCCGAAGATGGGTGGATTGTGAGATCCCATATTGATTGGAGAGGAGAACGAAGCATTCTTTAAAAGGGTTTGGAAACCTCTCCCTAACAAACGTATTTTAAAAACCTTGAGGGGAAGCCCAAAAAGATAAACCCAAGGAGGACAATATCTGTTAGCGGTCGATTTGGGCCGTTACAATCCAGCTTCTCTGTAAGTTCAGCCCACTTCATTACCTCTCTATTGAATAATCTTCTTTTCCTAGATTCCAAGTCTAATGGACATCATCCCGACAATCAATCTGCAGTGGTCGACCCCTTTTTTTGAAGTTCATGCATAGAACTCCGAGAAGAGAGAGGACTCACCCGACTATTTTGTTTATGATTATCCTCCTGGCTCACATAGTTCTGCACCACATGCACGTCAATTTCAACCTATAACATATTGGTAGGAAGGTTATTAGGGTATTATTGTTTGTTGGTTACAAATAGAGGGGCGGGGAATGAGGAAGCTTGAGAGTAATCTCCAGAAGGGAAAGTCCAAATATCTCAAAACACTTCGTTTAACTTGTAGTTCTGATATGTTTTACATTTCAATACATTCGAGTTCTATCACATATTAAAGGTACATTTCATATCTACCGCGTTCTTTATCATACACGACACAAATGGTCCGATTTTGAAACGTTATGATTCCTCCAGGTTCTTGCACTTGCATACTATGCTGTTTCATATTTCCCTGGTGGGTCTACTGGGATGAAGTTTTTGTCATCCGCTCTTATGTCTTCGGTTATGAAATGTTTTGGTAGTTGATCTCGACTCCAACGTGGCATACGCTAGGTGCACTGCACATTTCTCTTCTGATTAGAGATCTTTGTTAACGTTCGGGAAGTCTGGGAAACGATCCACAACATATTGCTGAGTGTGTAAACTAAAAGTATTAGCTACAGACACCCATTTTTGTGTTCTCTGGTTGTTTCATCCCCATCATCATATTGACTGAGCTATTCAGCAACTGTAGATGAAGGTGGTGTGAAGGCCTTGGGGCATTGTTATTTTCTTCCTATCACAATTTGAGGCACTAGAGAATGAAAAGCTAGAGTACTTCATCCCCTTCATCCCGCTTCTTTCTTATTATATATTGTCGTTTTTTTCGTGAAAATGTTACCTATCTCTCTCCTAACTATCGTGCTAAATGTATTATTAATTTTTTTAGTTCACTATTCGAGAGTGCGGAGTAAATAGTGATGTCTTATCTATTAAATTACGCTTGGTTGACAAGTTCATGTATTCAATTGATCAATAGTATAATGATTTGTACTAT TTCCACAACCCAATTTCTGCTCCCAAATCAGAGCAAATCCTGACATTTTCTCGATTTTTTGAGCTTCGATTTGAAAGAAAGCGATGCTGAAAACGGCGCAGGGATGGTTCACGCAAGGGGATAGTAGTGGGAGTGATAATCAGGTCAAACCGACCTCTTCGTTGCTCGCCAGTTGGAATTCTTACGCAGAATCACAAGCTGCCGATGATAGCAGCTCCAATTCGAGAATCGGTTTCGATCTTGAAAGTGCTGTTAGGTCAGCGAATGAAACCGTTTCGGGAACTTTTAGCGTGGTTTCTAAAGGAGTAAGAGAACTTCCTGGGAACCTCCAATCTGCCACTAGCAATGTACCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATTTTCATTGCGTTTGCATTGTTCCTCCCTATCATGGTTCTGGTGCCTCATAAGTTTGCTATCTGTTTTACCCTTGGGTGTTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCTAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACGGTGATCTTTATTGGATGTATGTTTGGCACCTTGTACGTTTCAATGGGGCTCCACAGCTATATTCTCTCTGTTATCTTCTCTGTATTACAGGTTCTTGCACTTGCATACTATGCTGTTTCATATTTCCCTGGTGGGTCTACTGGGATGAAGTTTTTGTCATCCGCTCTTATGTCTTCGGTTATGAAATGTTTTGGTAGTTGATCTCGACTCCAACGTGGCATACGCTAGGTGCACTGCACATTTCTCTTCTGATTAGAGATCTTTGTTAACGTTCGGGAAGTCTGGGAAACGATCCACAACATATTGCTGAGTGTGTAAACTAAAAGTATTAGCTACAGACACCCATTTTTGTGTTCTCTGGTTGTTTCATCCCCATCATCATATTGACTGAGCTATTCAGCAACTGTAGATGAAGGTGGTGTGAAGGCCTTGGGGCATTGTTATTTTCTTCCTATCACAATTTGAGGCACTAGAGAATGAAAAGCTAGAGTACTTCATCCCCTTCATCCCGCTTCTTTCTTATTATATATTGTCGTTTTTTTCGTGAAAATGTTACCTATCTCTCTCCTAACTATCGTGCTAAATGTATTATTAATTTTTTTAGTTCACTATTCGAGAGTGCGGAGTAAATAGTGATGTCTTATCTATTAAATTACGCTTGGTTGACAAGTTCATGTATTCAATTGATCAATAGTATAATGATTTGTACTAT ATGCTGAAAACGGCGCAGGGATGGTTCACGCAAGGGGATAGTAGTGGGAGTGATAATCAGGTCAAACCGACCTCTTCGTTGCTCGCCAGTTGGAATTCTTACGCAGAATCACAAGCTGCCGATGATAGCAGCTCCAATTCGAGAATCGGTTTCGATCTTGAAAGTGCTGTTAGGTCAGCGAATGAAACCGTTTCGGGAACTTTTAGCGTGGTTTCTAAAGGAGTAAGAGAACTTCCTGGGAACCTCCAATCTGCCACTAGCAATGTACCCTCAGGAAAAGCCCTGATGTATTTTGGTTTGTTTCTAGCAACTGGGGTTTTCTTTATTTTCATTGCGTTTGCATTGTTCCTCCCTATCATGGTTCTGGTGCCTCATAAGTTTGCTATCTGTTTTACCCTTGGGTGTTGCTTCATCATTGGATCCTTCTTTGCACTCAAGGGTCCTAAGAATCAGCTTGCACATATGTTCTCAAAAGAGAGACTTCCTTTTACGGTGATCTTTATTGGATGTATGTTTGGCACCTTGTACGTTTCAATGGGGCTCCACAGCTATATTCTCTCTGTTATCTTCTCTGTATTACAGGTTCTTGCACTTGCATACTATGCTGTTTCATATTTCCCTGGTGGGTCTACTGGGATGAAGTTTTTGTCATCCGCTCTTATGTCTTCGGTTATGAAATGTTTTGGTAGTTGA MLKTAQGWFTQGDSSGSDNQVKPTSSLLASWNSYAESQAADDSSSNSRIGFDLESAVRSANETVSGTFSVVSKGVRELPGNLQSATSNVPSGKALMYFGLFLATGVFFIFIAFALFLPIMVLVPHKFAICFTLGCCFIIGSFFALKGPKNQLAHMFSKERLPFTVIFIGCMFGTLYVSMGLHSYILSVIFSVLQVLALAYYAVSYFPGGSTGMKFLSSALMSSVMKCFGS
BLAST of Carg24740-RA vs. NCBI nr
Match: XP_022937297.1 (protein transport protein SFT2-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 343.6 bits (880), Expect = 5.2e-91 Identity = 228/230 (99.13%), Postives = 230/230 (100.00%), Query Frame = 0
BLAST of Carg24740-RA vs. NCBI nr
Match: XP_022976009.1 (protein transport protein SFT2-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 343.2 bits (879), Expect = 6.8e-91 Identity = 228/230 (99.13%), Postives = 230/230 (100.00%), Query Frame = 0
BLAST of Carg24740-RA vs. NCBI nr
Match: XP_023536553.1 (protein transport protein SFT2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 335.1 bits (858), Expect = 1.9e-88 Identity = 224/230 (97.39%), Postives = 228/230 (99.13%), Query Frame = 0
BLAST of Carg24740-RA vs. NCBI nr
Match: XP_004139775.1 (PREDICTED: protein transport protein SFT2-like [Cucumis sativus]) HSP 1 Score: 305.4 bits (781), Expect = 1.6e-79 Identity = 209/229 (91.27%), Postives = 212/229 (92.58%), Query Frame = 0
BLAST of Carg24740-RA vs. NCBI nr
Match: XP_022981600.1 (protein transport protein SFT2 [Cucurbita maxima]) HSP 1 Score: 305.4 bits (781), Expect = 1.6e-79 Identity = 206/229 (89.96%), Postives = 214/229 (93.45%), Query Frame = 0
BLAST of Carg24740-RA vs. TAIR10
Match: AT4G26550.1 (Got1/Sft2-like vescicle transport protein family) HSP 1 Score: 228.0 bits (580), Expect = 5.8e-60 Identity = 131/225 (58.22%), Postives = 152/225 (67.56%), Query Frame = 0
BLAST of Carg24740-RA vs. TAIR10
Match: AT5G56020.1 (Got1/Sft2-like vescicle transport protein family) HSP 1 Score: 211.5 bits (537), Expect = 5.6e-55 Identity = 130/234 (55.56%), Postives = 150/234 (64.10%), Query Frame = 0
BLAST of Carg24740-RA vs. TAIR10
Match: AT5G24170.1 (Got1/Sft2-like vescicle transport protein family) HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05 Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Carg24740-RA vs. Swiss-Prot
Match: sp|P38166|SFT2_YEAST (Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SFT2 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 9.0e-10 Identity = 32/79 (40.51%), Postives = 55/79 (69.62%), Query Frame = 0
BLAST of Carg24740-RA vs. Swiss-Prot
Match: sp|Q8WV19|SFT2A_HUMAN (Vesicle transport protein SFT2A OS=Homo sapiens OX=9606 GN=SFT2D1 PE=1 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 3.3e-04 Identity = 27/78 (34.62%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of Carg24740-RA vs. TrEMBL
Match: tr|A0A2P6QLH8|A0A2P6QLH8_ROSCH (Vesicle transport protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0075471 PE=3 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 1.3e-66 Identity = 149/229 (65.07%), Postives = 163/229 (71.18%), Query Frame = 0
BLAST of Carg24740-RA vs. TrEMBL
Match: tr|M5VZZ5|M5VZZ5_PRUPE (Vesicle transport protein OS=Prunus persica OX=3760 GN=PRUPE_6G028800 PE=3 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 5.6e-65 Identity = 148/229 (64.63%), Postives = 164/229 (71.62%), Query Frame = 0
BLAST of Carg24740-RA vs. TrEMBL
Match: tr|W9RMJ7|W9RMJ7_9ROSA (Vesicle transport protein OS=Morus notabilis OX=981085 GN=L484_020215 PE=3 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 1.2e-64 Identity = 144/229 (62.88%), Postives = 163/229 (71.18%), Query Frame = 0
BLAST of Carg24740-RA vs. TrEMBL
Match: tr|B9T1Q6|B9T1Q6_RICCO (Vesicle transport protein OS=Ricinus communis OX=3988 GN=RCOM_0104790 PE=3 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 2.8e-64 Identity = 144/231 (62.34%), Postives = 164/231 (71.00%), Query Frame = 0
BLAST of Carg24740-RA vs. TrEMBL
Match: tr|A0A1D1XSP2|A0A1D1XSP2_9ARAE (Vesicle transport protein OS=Anthurium amnicola OX=1678845 GN=SFT2_0 PE=3 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63 Identity = 138/232 (59.48%), Postives = 166/232 (71.55%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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