MELO3C013189.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013189.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Vesicle transport protein
Location	chr01 : 14257922 .. 14258134 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAAATGGCGCAGGGTTGGTTCACGCAAGGAGGTAGTAGTGGCAGTGATAATCAACTCAAAACTTCCTCTTCGTTGCTCGCCGATTGGAACTCTTACGCAGAATCACAAGCTGCTGATGATAGCACCTTCAATATGGGAATTGGATTGGATCTCGAAAGTGCTGTTAGGTCCGCCAATGAAACTGTTTCGGGAACCTTCAACGTGTAA

mRNA sequence

ATGCAGAAAATGGCGCAGGGTTGGTTCACGCAAGGAGGTAGTAGTGGCAGTGATAATCAACTCAAAACTTCCTCTTCGTTGCTCGCCGATTGGAACTCTTACGCAGAATCACAAGCTGCTGATGATAGCACCTTCAATATGGGAATTGGATTGGATCTCGAAAGTGCTGTTAGGTCCGCCAATGAAACTGTTTCGGGAACCTTCAACGTGTAA

Coding sequence (CDS)

ATGCAGAAAATGGCGCAGGGTTGGTTCACGCAAGGAGGTAGTAGTGGCAGTGATAATCAACTCAAAACTTCCTCTTCGTTGCTCGCCGATTGGAACTCTTACGCAGAATCACAAGCTGCTGATGATAGCACCTTCAATATGGGAATTGGATTGGATCTCGAAAGTGCTGTTAGGTCCGCCAATGAAACTGTTTCGGGAACCTTCAACGTGTAA

Protein sequence

MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSANETVSGTFNV

Homology

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BLAST of MELO3C013189.2 vs. NCBI nr
Match: XP_004139775.1 (PREDICTED: protein transport protein SFT2-like [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 2.5e-28
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSA 60
          MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFN+GIGLDLESAVRSA
Sbjct: 1  MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNLGIGLDLESAVRSA 60

Query: 61 NETVSGTFNV 71
          NETVSGTF+V
Sbjct: 61 NETVSGTFSV 70

[Close]

BLAST of MELO3C013189.2 vs. NCBI nr
Match: KGN44130.1 (hypothetical protein Csa_7G200830 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 4  MAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSANET 63
          MAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFN+GIGLDLESAVRSANET
Sbjct: 1  MAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNLGIGLDLESAVRSANET 60

Query: 64 VSGTFNV 71
          VSGTF+V
Sbjct: 61 VSGTFSV 67

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BLAST of MELO3C013189.2 vs. NCBI nr
Match: XP_022940578.1 (protein transport protein SFT2-like [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSA 60
          MQK AQGWFTQGG+SGSDNQLK+SSSLLADWNSYAESQA++DS+ N+GIG DLESAVRSA
Sbjct: 1  MQKAAQGWFTQGGNSGSDNQLKSSSSLLADWNSYAESQASEDSSSNLGIGFDLESAVRSA 60

Query: 61 NETVSGTFNV 71
          NETVSGTF+V
Sbjct: 61 NETVSGTFSV 70

[Close]

BLAST of MELO3C013189.2 vs. NCBI nr
Match: XP_022981600.1 (protein transport protein SFT2 [Cucurbita maxima])

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSA 60
          MQK AQGWFTQGG+SGSDNQLK+SSSLLADWNSYAESQA++DS+ N+GIG DLESAVRSA
Sbjct: 1  MQKAAQGWFTQGGNSGSDNQLKSSSSLLADWNSYAESQASEDSSSNLGIGFDLESAVRSA 60

Query: 61 NETVSGTFNV 71
          NETVSGTF+V
Sbjct: 61 NETVSGTFSV 70

[Close]

BLAST of MELO3C013189.2 vs. NCBI nr
Match: XP_022139356.1 (protein transport protein SFT2 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSY-AESQAADDSTFNMGIGLDLESAVRS 60
          MQKMAQGWFTQGG SGSDNQLKTSSSLLADWNSY AESQAA+DST ++GIG DLESAVRS
Sbjct: 1  MQKMAQGWFTQGGGSGSDNQLKTSSSLLADWNSYAAESQAAEDSTSSLGIGFDLESAVRS 60

Query: 61 ANETVSGTFNV 71
          AN+TVSGTF+V
Sbjct: 61 ANDTVSGTFSV 71

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BLAST of MELO3C013189.2 vs. TAIR10
Match: AT4G26550.1 (Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 76.6 bits (187), Expect = 6.6e-15
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4  MAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSANET 63
          M+QGWF+ GGSS  D Q ++ SSLLADWNSYA S+  ++S      G D+ESAVRSAN+T
Sbjct: 1  MSQGWFSMGGSSTVDQQQQSGSSLLADWNSYAASRDFEES--GGSFGFDIESAVRSANDT 60

Query: 64 VSGTFNV 71
          VSGTF+V
Sbjct: 61 VSGTFSV 65

[Close]

BLAST of MELO3C013189.2 vs. TAIR10
Match: AT5G56020.1 (Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-13
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1  MQKMAQGWFTQGGSSGSDNQ----LKT-SSSLLADWNSYAESQAADDSTFNMGIGLDLES 60
          M+KMA+GWF   G+S S +Q    L+T  +SLLADWNSYA S+  ++ T    +G D+ES
Sbjct: 1  MEKMAKGWFPMSGTSSSGDQQQQPLQTGGTSLLADWNSYAASRDFEEDTGT--LGFDIES 60

Query: 61 AVRSANETVSGTFNV 71
          AVRSAN+TVSGTFNV
Sbjct: 61 AVRSANDTVSGTFNV 73

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BLAST of MELO3C013189.2 vs. TrEMBL
Match: tr|A0A0A0K382|A0A0A0K382_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G200830 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.0e-27
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 4  MAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSANET 63
          MAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFN+GIGLDLESAVRSANET
Sbjct: 1  MAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNLGIGLDLESAVRSANET 60

Query: 64 VSGTFNV 71
          VSGTF+V
Sbjct: 61 VSGTFSV 67

[Close]

BLAST of MELO3C013189.2 vs. TrEMBL
Match: tr|B9T1Q6|B9T1Q6_RICCO (Vesicle transport protein OS=Ricinus communis OX=3988 GN=RCOM_0104790 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-16
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 1  MQKMAQGWFTQGGSSGSDNQLK--TSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVR 60
          MQKMAQGWF+  G+SG D Q K  +SSSLLADWNSYA SQ AD+S+  +GIG DLE+ VR
Sbjct: 1  MQKMAQGWFSSSGTSGEDQQQKPQSSSSLLADWNSYAASQDADESS-GLGIGFDLEAVVR 60

Query: 61 SANETVSGTFNV 71
          SAN++VSGTFNV
Sbjct: 61 SANDSVSGTFNV 71

[Close]

BLAST of MELO3C013189.2 vs. TrEMBL
Match: tr|M5VZZ5|M5VZZ5_PRUPE (Vesicle transport protein OS=Prunus persica OX=3760 GN=PRUPE_6G028800 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.4e-16
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSA 60
          MQKMAQ WF+Q G SG+D+   TSSSLLADWNSYA SQ+ D+S+ ++G+G DLESAVRSA
Sbjct: 1  MQKMAQEWFSQSG-SGADDSQNTSSSLLADWNSYAASQSTDESS-SLGLGFDLESAVRSA 60

Query: 61 NETVSGTFNV 71
          N+TVSGTF+V
Sbjct: 61 NDTVSGTFSV 68

[Close]

BLAST of MELO3C013189.2 vs. TrEMBL
Match: tr|A0A2I4F2C2|A0A2I4F2C2_9ROSI (Vesicle transport protein OS=Juglans regia OX=51240 GN=LOC108994855 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSA 60
          MQKMAQGWF+  GSS  ++Q K SS+LLADWNSYA SQ ++D + ++G G DLE+AVRSA
Sbjct: 1  MQKMAQGWFS--GSSNGEDQQKPSSTLLADWNSYAASQDSEDGS-DLGRGFDLEAAVRSA 60

Query: 61 NETVSGTFNV 71
          N+TVSGTFNV
Sbjct: 61 NDTVSGTFNV 67

[Close]

BLAST of MELO3C013189.2 vs. TrEMBL
Match: tr|A0A2I4F2C6|A0A2I4F2C6_9ROSI (Vesicle transport protein OS=Juglans regia OX=51240 GN=LOC108994855 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MQKMAQGWFTQGGSSGSDNQLKTSSSLLADWNSYAESQAADDSTFNMGIGLDLESAVRSA 60
          MQKMAQGWF+  GSS  ++Q K SS+LLADWNSYA SQ ++D + ++G G DLE+AVRSA
Sbjct: 1  MQKMAQGWFS--GSSNGEDQQKPSSTLLADWNSYAASQDSEDGS-DLGRGFDLEAAVRSA 60

Query: 61 NETVSGTFNV 71
          N+TVSGTFNV
Sbjct: 61 NDTVSGTFNV 67

The following BLAST results are available for this feature:

BLAST of MELO3C013189.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139775.1	2.5e-28	97.14	PREDICTED: protein transport protein SFT2-like [Cucumis sativus]	[more]
KGN44130.1	1.1e-26	97.01	hypothetical protein Csa_7G200830 [Cucumis sativus]	[more]
XP_022940578.1	3.7e-24	85.71	protein transport protein SFT2-like [Cucurbita moschata]	[more]
XP_022981600.1	3.7e-24	85.71	protein transport protein SFT2 [Cucurbita maxima]	[more]
XP_022139356.1	1.1e-23	87.32	protein transport protein SFT2 [Momordica charantia]	[more]

BLAST of MELO3C013189.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26550.1	6.6e-15	61.19	Got1/Sft2-like vescicle transport protein family	[more]
AT5G56020.1	1.2e-13	57.33	Got1/Sft2-like vescicle transport protein family	[more]

BLAST of MELO3C013189.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C013189.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K382\|A0A0A0K382_CUCSA	7.0e-27	97.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G200830 PE=4 SV=1	[more]
tr\|B9T1Q6\|B9T1Q6_RICCO	5.5e-16	69.44	Vesicle transport protein OS=Ricinus communis OX=3988 GN=RCOM_0104790 PE=3 SV=1	[more]
tr\|M5VZZ5\|M5VZZ5_PRUPE	9.4e-16	70.00	Vesicle transport protein OS=Prunus persica OX=3760 GN=PRUPE_6G028800 PE=3 SV=1	[more]
tr\|A0A2I4F2C2\|A0A2I4F2C2_9ROSI	3.0e-14	67.14	Vesicle transport protein OS=Juglans regia OX=51240 GN=LOC108994855 PE=3 SV=1	[more]
tr\|A0A2I4F2C6\|A0A2I4F2C6_9ROSI	3.0e-14	67.14	Vesicle transport protein OS=Juglans regia OX=51240 GN=LOC108994855 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006810	transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013189.2.1	MELO3C013189.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013189.2	Csa7G200830	Cucumber (Chinese Long) v2	cumedB513
MELO3C013189.2	CSPI07G09470	Wild cucumber (PI 183967)	cpimedB527
MELO3C013189.2	CmaCh01G010590	Cucurbita maxima (Rimu)	cmamedB463
MELO3C013189.2	CmoCh01G011000	Cucurbita moschata (Rifu)	cmomedB451
MELO3C013189.2	Lsi02G018060	Bottle gourd (USVL1VR-Ls)	lsimedB203
MELO3C013189.2	Cp4.1LG02g00350	Cucurbita pepo (Zucchini)	cpemedB591
MELO3C013189.2	Cp4.1LG06g08250	Cucurbita pepo (Zucchini)	cpemedB844
MELO3C013189.2	CsGy7G009090	Cucumber (Gy14) v2	cgybmedB469
MELO3C013189.2	Cla003334	Watermelon (97103) v1	medwmB184
MELO3C013189.2	ClCG09G021560	Watermelon (Charleston Gray)	medwcgB158
MELO3C013189.2	Cla97C09G182970	Watermelon (97103) v2	medwmbB197
MELO3C013189.2	Bhi09G001512	Wax gourd	medwgoB243
MELO3C013189.2	Carg24740	Silver-seed gourd	carmedB0442
MELO3C013189.2	Carg23347	Silver-seed gourd	carmedB0076
MELO3C013189.2	CsaV3_7G021580	Cucumber (Chinese Long) v3	cucmedB540

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None