Carg23989 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23989
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator of RNA polymerase II transcription subunit 15a
Location	Cucurbita_argyrosperma_scaffold_129 : 91769 .. 93977 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCCTTTTGCTTTGTTATTGGGGTTTTGACGCAATTTCTTCTCGTAGGTTATTTCGAAACTTTTGAATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATGTATGATTTCTTGCTTCTTTGAGAAGTTTGTCTGAGATTTTGTAACTTTTTGTGTTCATAGTTCGCTGCTTAGATTAGTTACTATGTGATGGTTTTCTGAATTAAGCTATGAACGGCAAAACCTTTTTCTACCTTTTCTTAAATTTGTGTTTAACTGATGGATTCGAACTGATTTTTCCAAAACCTTATCGAAGATTGTTTGGAGAGAATTCCACGTTGGGTAATTAAGATGATCCTAAGGATTAGGCCTTTTGGGGTTCCGAAAAGTAAAAGCTACGAGAGGTTATGCTCAAAGTGGAAAATATCATACAATTTTAGAGAGTCGTGATTCCTAACTTGGTATTAGAGTCATGAGAATCTTCAAATGTCGAACAAAGAAGTTGTGAGCCTTGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAGAGAGTGTACTCTGTTCGAGGGCTCCAGAGAAAGAAATCAAGGGTGTACTTTGTTTGAGGGCTCCAAAGAAAGGAGTCGAGCCTCGTTTAAGAGGAGATTGTTCTTGAGGGCTACATAGTTCTCAGGAGAGTCTCTATAGTGTAGTTACTTTGTTCGAGGGCTCCAGAAAAAGTAGTCGAGCCTCGTTTAAGGGGAAATTGTTCTTGAGAGCTACATAGTTCTCAAGAGAGGTTCTATAGTGTAGTTTGTTCGTGGGAAGGATCGTTGAGGATTGGTGAGAGAGTTGGTGATTTAAAATTATCCCGTTCACTTTTCCATTTCTGGTTTGAAGATGTGGTAGGTTAGATTTTGTGGATGCGGTTCCTATTTGTTTCTTCAAGTGTTACCCCTTCATTGAACATAAGACGAATATCTTATTTGGAGCAGCATGGACTCTATTGAATTTTCCTCTAACTGTTCTAAAGTATCGTGACATCCCATATTGGTTGGAGAGTATGGAGAGGGGAATGAAACATTCGTCGTAATGGTGTAGAAACCTCTCCTTAGCAGATGCATTTTAAAATCGCGAGACTGACAACGATACTTAACGGGCCAAAGCGGACAATATATTTTAGTGGTGAGGTTAGGCTGTTACAAATGGTACCAAAATCACCTAGCGAGGATGCTAGACCCTTCAGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGGGAACCCTAGACCCTCAAGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGAACGAAACATTCCTCGTAAGGGTGTGGAGACCTCTCCCTAGTAGACACGTTTTAAAACCGCAAGATTGACAGCGATACGTAACGAGTCAAAGCGGACAATATATTTTAGCGGTGGGCTTGGGCTGTTATAAATGGTACCAGAGTCAAACACCGGACAGTAAACCAACAAAGACGCTAGGCCCTGTTCTCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGAATGAAACATTCCTCGTAAGGGTGTGGAAACCTCCATAGTAAATTCGTTTTAAAACGGCGATACATAACAAGTCAAATCATATAATATCTGCTAGCAGGGAGCTTAAGTTGTTACACTAATATTTTGAATCATGGATGTGGGTTACAGCTATAGTTTTTTCGCTCCCGAACAGCTTCACGTGCTTTTGCGTTTAATAAACTTGTCAGCCACCATCTTTTCCATTTTTATGTAGAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGGTACTTGCTGCTCTCACTTGTATAAAGCCCTGATCTATTATGCTATCTACTAAATACAACACTGAGTACTCACCATTTCTATATTGAACCTCTAATTTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAGTCAGAGAACATCCACAATGACAATGTTTCTTCTAATGTATTTACCAACTC

mRNA sequence

CTCTCCTTTTGCTTTGTTATTGGGGTTTTGACGCAATTTCTTCTCGTAGGTTATTTCGAAACTTTTGAATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAGTCAGAGAACATCCACAATGACAATGTTTCTTCTAATGTATTTACCAACTC

Coding sequence (CDS)

ATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAG

Protein sequence

MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP

Homology

[Close]

BLAST of Carg23989 vs. NCBI nr
Match: XP_022927776.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata] >XP_022927777.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 7.1e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA
Sbjct: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 111
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 110

[Close]

BLAST of Carg23989 vs. NCBI nr
Match: XP_023530801.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo] >XP_023530802.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.5 bits (550), Expect = 4.6e-53
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA
Sbjct: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 111
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGT TALPSVSGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTFTALPSVSGPVSSNQP 110

[Close]

BLAST of Carg23989 vs. NCBI nr
Match: XP_022989020.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima] >XP_022989021.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima] >XP_022989022.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 213.4 bits (542), Expect = 3.9e-52
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGEPEVDAG WRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGL+ELRKIA
Sbjct: 1   MDSNHLGPAQGGEPEVDAGDWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLSELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 111
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS+SGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSMSGPVSSNQP 110

[Close]

BLAST of Carg23989 vs. NCBI nr
Match: XP_022989023.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 199.9 bits (507), Expect = 4.5e-48
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGP QGGE  VDAG WRSQL P+SRHRIVN IIETLKRHIPVSGPEGL+ELRKIA
Sbjct: 1   MDSNHLGPTQGGESGVDAGDWRSQLQPESRHRIVNKIIETLKRHIPVSGPEGLSELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 111
           VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPS+SGPVSSNQP
Sbjct: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSMSGPVSSNQP 110

[Close]

BLAST of Carg23989 vs. NCBI nr
Match: XP_023530803.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023530804.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023530805.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023530806.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 93/110 (84.55%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MDSNHLGPAQGGE EVDAG WRSQL P+SRHRIV+ IIETLKRH+PVSGPEGL+E+RKIA
Sbjct: 1   MDSNHLGPAQGGESEVDAGDWRSQLQPESRHRIVDKIIETLKRHLPVSGPEGLSEVRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSNQP 111
           VRFEEKV+  ATSQSDYLRKISLRMLTMETK GTT ALPS+SGP++SNQP
Sbjct: 61  VRFEEKVHTVATSQSDYLRKISLRMLTMETKPGTTPALPSMSGPMASNQP 110

[Close]

BLAST of Carg23989 vs. TAIR10
Match: AT1G15780.1 (unknown protein)

HSP 1 Score: 134.0 bits (336), Expect = 5.5e-32
Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKI 60
           MD+N+  P+   GEP +D G WR+QLPPDSR +IVN I+ETLK+H+P SGPEG+NELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTTTALPSVSGPVS 107
           A RFEEK+++ A +Q+DYLRKIS++MLTMETKS    G++ A+P+ +   S
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111

[Close]

BLAST of Carg23989 vs. TAIR10
Match: AT1G15790.1 (unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 6.3e-20
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 19 GVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYL 78
          G WR+Q P  SR RIVN I+ET  + +P   PEG NELRKIAVRFEEK++N A++Q++YL
Sbjct: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 79 RKISLRMLTMETKS 93
          R+I ++ML METKS
Sbjct: 65 RQICMKMLNMETKS 78

[Close]

BLAST of Carg23989 vs. Swiss-Prot
Match: sp|F4I171|MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.9e-31
Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKI 60
           MD+N+  P+   GEP +D G WR+QLPPDSR +IVN I+ETLK+H+P SGPEG+NELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTTTALPSVSGPVS 107
           A RFEEK+++ A +Q+DYLRKIS++MLTMETKS    G++ A+P+ +   S
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111

[Close]

BLAST of Carg23989 vs. TrEMBL
Match: tr|A0A1S3C0H1|A0A1S3C0H1_CUCME (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC103495458 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 8.4e-35
Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P QGGEP ++AG WRSQL PDSRHRIVN I+ETLKRH+PVSG EGL+ELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGP-VSSNQP 111
           VRFEEK++ AATSQSDYLRKISL+MLTMETK+  T   P  S P V SN+P
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSNPMVPSNKP 111

[Close]

BLAST of Carg23989 vs. TrEMBL
Match: tr|A0A2P6QLK2|A0A2P6QLK2_ROSCH (Putative coactivator CBP, KIX domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0075871 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-32
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P QGGEP +DAG WRSQL  DSR RIVN I++TLKRH+P SG EGL+EL+KIA
Sbjct: 1   MDTNNWRPPQGGEPAMDAGDWRSQLQQDSRQRIVNKIMDTLKRHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTT--TALPSVSGPVSSNQP 111
           VRFEEK+Y AATSQSDYLRKISL+MLTMETKS  T  T+LPS S   S+  P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIGTSLPSNSAGNSNRPP 112

[Close]

BLAST of Carg23989 vs. TrEMBL
Match: tr|F6I6N7|F6I6N7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0067g02320 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.0e-32
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  PAQ  EP +D G WR+QLPPDSR RIVN I++TLKRH+PVSG EGL+ELRKIA
Sbjct: 1   MDTNNWRPAQ-AEPAMDGGDWRTQLPPDSRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTT--TALPSVSGPVSSNQP 111
           VRFEEK+Y AATSQSDYLRKISL+MLTMETKS T   + LPS S   S N P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTAMPSNLPSNSAGNSKNPP 111

[Close]

BLAST of Carg23989 vs. TrEMBL
Match: tr|W9RBX9|W9RBX9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025703 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-30
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P QGGEP +DA  WR+QL PDSR RIVN I++TLK+H+P SG EGL+EL+KIA
Sbjct: 1   MDNNNWRPIQGGEPAMDAVDWRTQLQPDSRQRIVNKIMDTLKKHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSN 109
            RFEEK+Y AATSQSDYLRKISL+MLTMETKS  +      + PVS+N
Sbjct: 61  ERFEEKIYTAATSQSDYLRKISLKMLTMETKSQNSIPNSLPTNPVSNN 108

[Close]

BLAST of Carg23989 vs. TrEMBL
Match: tr|A0A2P5EWW4|A0A2P5EWW4_9ROSA (Coactivator CBP, KIX domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_140690 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 72/105 (68.57%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P QGGEP +D   WR+QL PDSR RIVN I++TLK+H+P SG EGL+EL+KIA
Sbjct: 1   MDNNNWRPVQGGEPTMDTTDWRTQLQPDSRQRIVNKIMDTLKKHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTT--TALPSVSG 104
            RFEEK+Y AATSQSDYLRKISL+MLTMETKS  T   ALPS  G
Sbjct: 61  ERFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIPNALPSNPG 105

The following BLAST results are available for this feature:

BLAST of Carg23989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927776.1	7.1e-54	100.00	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata...	[more]
XP_023530801.1	4.6e-53	99.09	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub...	[more]
XP_022989020.1	3.9e-52	97.27	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]
XP_022989023.1	4.5e-48	91.82	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbi...	[more]
XP_023530803.1	1.8e-44	84.55	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]

BLAST of Carg23989 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15780.1	5.5e-32	58.56	unknown protein	[more]
AT1G15790.1	6.3e-20	60.81	unknown protein	[more]

BLAST of Carg23989 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4I171\|MD15A_ARATH	9.9e-31	58.56	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]

BLAST of Carg23989 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0H1\|A0A1S3C0H1_CUCME	8.4e-35	72.07	mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A2P6QLK2\|A0A2P6QLK2_ROSCH	1.3e-32	69.64	Putative coactivator CBP, KIX domain-containing protein OS=Rosa chinensis OX=746...	[more]
tr\|F6I6N7\|F6I6N7_VITVI	3.0e-32	70.54	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0067g02320 PE=4 SV=...	[more]
tr\|W9RBX9\|W9RBX9_9ROSA	1.6e-30	65.74	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025703 PE=4 SV=1	[more]
tr\|A0A2P5EWW4\|A0A2P5EWW4_9ROSA	2.1e-30	68.57	Coactivator CBP, KIX domain containing protein OS=Trema orientalis OX=63057 GN=T...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR036529	KIX_dom_sf
IPR036546	MED15_KIX

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23989-RA	Carg23989-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.246.20		coord: 20..98 e-value: 3.8E-22 score: 80.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33137	FAMILY NOT NAMED	coord: 17..100
None	No IPR available	PANTHER	PTHR33137:SF4	F7H2.13 PROTEIN-RELATED	coord: 17..100
IPR036546	Mediator complex subunit 15, KIX domain	PFAM	PF16987	KIX_2	coord: 20..94 e-value: 5.6E-37 score: 125.5
IPR036529	Coactivator CBP, KIX domain superfamily	SUPERFAMILY	SSF47040	Kix domain of CBP (creb binding protein)	coord: 20..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23989	MELO3C018676	Melon (DHL92) v3.5.1	carmeB0729
Carg23989	ClCG09G013450	Watermelon (Charleston Gray)	carwcgB0712
Carg23989	CmaCh19G002810	Cucurbita maxima (Rimu)	carcmaB1029
Carg23989	CmoCh19G003080	Cucurbita moschata (Rifu)	carcmoB1001
Carg23989	CmoCh11G015020	Cucurbita moschata (Rifu)	carcmoB1000
Carg23989	Lsi03G008060	Bottle gourd (USVL1VR-Ls)	carlsiB674
Carg23989	Cp4.1LG04g06860	Cucurbita pepo (Zucchini)	carcpeB1035
Carg23989	Cp4.1LG15g02490	Cucurbita pepo (Zucchini)	carcpeB1034
Carg23989	MELO3C018677.2	Melon (DHL92) v3.6.1	carmedB0740
Carg23989	CsaV3_7G006150	Cucumber (Chinese Long) v3	carcucB0772
Carg23989	Cla97C09G176100	Watermelon (97103) v2	carwmbB0769

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23989	Carg24582	Silver-seed gourd	carcarB566

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23989	Cucumber (Gy14) v2	carcgybB0731
Carg23989	Cucumber (Gy14) v1	carcgyB0827
Carg23989	Cucurbita maxima (Rimu)	carcmaB1028
Carg23989	Wild cucumber (PI 183967)	carcpiB0769
Carg23989	Cucumber (Chinese Long) v2	carcuB0753
Carg23989	Wax gourd	carwgoB0868