CsaV3_7G006150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G006150
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionmediator of RNA polymerase II transcription subunit 15a
Locationchr7 : 3737168 .. 3739323 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACGTTCTTCAGATTCTGTTTGGGCCTTCTTCAAAGCCAAAGTTTGGGCTGTTATATGTGGTTAAAGGTAGTCAAGGCCATCCTTGCATAATCTTCCATTCTAGATGTATGGATCAACTTTTTGTAGGGTAAATCTTCCCAAATTTTGTATAAAAATGTTATTTGTTGTAAATTTATTTGAAATTTTATATAGTTATAAAATGAAAAATTGCACCCAACAGCATAAGTTAGAAAATAAATATAATCTATAACACAAGAAAACATTTTTGTTTTTTTTAAAATGTCAATTTCACCCTTCAGTTTCCTTCTTCTCATGAAGGGCATTTTGGTAAAATTGGCTCGTGTAAGTGTTTTGGGCAGGGAACGAAGCAAAGAAATAACATAAATAACTTTGTTTATCAATGGCTGGCTGACGCTGCTCACGAAGAAGACTAGAACGAACAGGTTTCTTTCTTGGTTTGCCTTCCACGCATGGAGATGCTTCTTGATCCACACAACACCCACACCCTCCCCTCTTCCACGGCTTGCTAAATCGCGCTCCCTGGCTAACAAGTTTTCGATGATTTATCTTCTTTAGGTTTCCGCTATTTCCAGATAATTTGACTCATCATTCTCTGTAATCAGCTCCAAAACAATTGCAGAATCCATTCATTGACCCCACCCAATTTCTGCCCGATTACTATCTCCACCGCCAATTTCTGACCTTCATTGATCCCACCCACCCCACTCCTTGTTATTGGGGTTTTGGACACACCCTTTTCCATTTTGGTTGTTTGGGAACTTTTGAATGGATAACAATAATTGGAGACCTACTCAAGCTGTAGAACCTGGAATGGAGACCGTGGATTGGAGGTCTCAATTGCAACCAGATTCTCGACAACGAATTGTCAACAAAATGTATGATTTCTTACATCCTGCTCTACTATTCTATCTTATTTAACATATGCCTTTGAGCTTATATAGCTCTTTGTTTCATAGTTCGTTGGTTAGATTACTCGGGAATGATTTCTTGAATTCTGTTTCTAAAACGTAATTTCTTGAAATTACACGTTATTGACTTTCCCATTCTTGGATTGAAGATATAGTAGGTTGGGTTTTGTGGGGAGGTTCTTTTTTGATTCTTCAGGTATTATCCTCTTCTTTAAAAAGAAGAAATGTAAGCTATTTGTAGAGGTGGGGATCTTGCTGAATTTGACTGGGCCATTTTAGAGTACGCTCCTCTAAAGTATCTAATACTTTGAATCATGGACATAGATTGCTATTGTAGTTTTCCTTTCAAGAACAACTTCTCATGCTTTTGCATTTAATATACTAGTTAGCCACTATGCTTTTATATTTTTATCTTTTTTTTTTTTGGTTAGAATGGAGACATTGAAGAGGCACCTTCCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGGAAAAGATTTTTACTGCCGCTACCAGTCAGGTATTCTTGCTCGCTTTGTTGTTGTTTAAATCAAGGATTGTCATTTATGTTTATCCCATATTCTATTAACAATAAGATACCGGTTTGATTTGCTACCTAAGTTTTAGTTGTGTAACGAACATACTCCTTTTTTTTCTTTGGGGCCTGACTTTCTTTTTTTGTGTGCCCATGTATATTCTTTCATTTCTCTCATTGAAATCCTGTTTGATCGTGTTATGTGTTCTTCCACCAAACACAACTTTGTTTTAGCAATCTCACCAATTTTATTTTTAATATCTTATTTCAGTCAGATTACCTAAGGAAAATATCTCTTAAGATGCTTACCATGGAAACGAAAACTCAGCCCCCTATGGGGAATTCATTACTAGTCAATATTGAAAATGAGTTGGGTAATTTTTTTTCCAACGAAGCTTTAAATATATCATTGTGTATATATTATACTTTGTAAATTAATTTGTTGTCTTCTTTTTAGGTCTTATAGAATATTCTGGTGAAGATGAAGCATCCACAATAACTTGTGTAGATGGTTGAAGAAGAATGGACGTTAAATGTGCAATTTATATGGGAATAAGGTTGGATGGATTTTAAATAGATACTTATAGTAAATAGTAATTAAGGTGATGGGCTCGTCACGAATCCATTCAACCTAGTGTGACTTTTTTTTTTTTTTTGATAAGAGACA

mRNA sequence

ATGGATAACAATAATTGGAGACCTACTCAAGCTGTAGAACCTGGAATGGAGACCGTGGATTGGAGGTCTCAATTGCAACCAGATTCTCGACAACGAATTGTCAACAAAATAATGGAGACATTGAAGAGGCACCTTCCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGGAAAAGATTTTTACTGCCGCTACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTTAAGATGCTTACCATGGAAACGAAAACTCAGCCCCCTATGGGGAATTCATTACTAGTCAATATTGAAAATGAGTTGGGTCTTATAGAATATTCTGGTGAAGATGAAGCATCCACAATAACTTGTGTAGATGGTTGA

Coding sequence (CDS)

ATGGATAACAATAATTGGAGACCTACTCAAGCTGTAGAACCTGGAATGGAGACCGTGGATTGGAGGTCTCAATTGCAACCAGATTCTCGACAACGAATTGTCAACAAAATAATGGAGACATTGAAGAGGCACCTTCCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGGAAAAGATTTTTACTGCCGCTACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTTAAGATGCTTACCATGGAAACGAAAACTCAGCCCCCTATGGGGAATTCATTACTAGTCAATATTGAAAATGAGTTGGGTCTTATAGAATATTCTGGTGAAGATGAAGCATCCACAATAACTTGTGTAGATGGTTGA

Protein sequence

MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENELGLIEYSGEDEASTITCVDG
Homology
[Close]
BLAST of CsaV3_7G006150 vs. NCBI nr
Match: XP_011658765.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 104
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGN L  N
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNPLPSN 103

[Close]
BLAST of CsaV3_7G006150 vs. NCBI nr
Match: XP_008455247.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 93/103 (90.29%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MD NNWRPTQ  EPGME  DWRSQLQPDSR RIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 104
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQP MGN L  N
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSN 103

[Close]
BLAST of CsaV3_7G006150 vs. NCBI nr
Match: XP_022963528.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 176.8 bits (447), Expect = 4.7e-41
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MD NNWRPTQ  EPG+E  DWRSQLQPDSRQRIVNKIMETLKRHLPVSG EGLSEL+KIA
Sbjct: 1   MDTNNWRPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 104
           VRFEEKI+TAATSQSDYLRKISLKMLTMETK+Q PMG SL  N
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSN 103

[Close]
BLAST of CsaV3_7G006150 vs. NCBI nr
Match: XP_023553730.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.8 bits (447), Expect = 4.7e-41
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MD NNWRPTQ  EPG+E  DWRSQLQPDSRQRIVNKIMETLKRHLPVSG EGLSEL+KIA
Sbjct: 1   MDTNNWRPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 104
           VRFEEKI+TAATSQSDYLRKISLKMLTMETK+Q PMG SL  N
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSN 103

[Close]
BLAST of CsaV3_7G006150 vs. NCBI nr
Match: XP_022967562.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 176.4 bits (446), Expect = 6.2e-41
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MD NNWRPTQ  EPG+E  DWRSQLQPDSRQRIVNKIMETLKRHLPVSG EGLSEL+KIA
Sbjct: 1   MDTNNWRPTQGGEPGIEDGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 104
           VRFEEKI+TAATSQSDYLRKISLKMLTMETK+Q PMG SL  N
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSN 103

[Close]
BLAST of CsaV3_7G006150 vs. TAIR10
Match: AT1G15780.1 (unknown protein)

HSP 1 Score: 144.8 bits (364), Expect = 3.6e-35
Identity = 72/107 (67.29%), Postives = 87/107 (81.31%), Query Frame = 0 

Query: 1   MDNNNWRPT-QAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 60
           MDNNNWRP+    EP M+T DWR+QL PDSRQ+IVNKIMETLK+HLP SG EG++ELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIEN 107
           A RFEEKIF+ A +Q+DYLRKIS+KMLTMETK+Q   G+S  +   N
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAAN 107

[Close]
BLAST of CsaV3_7G006150 vs. TAIR10
Match: AT1G15790.1 (unknown protein)

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-20
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 18  TVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDY 77
           T DWR+Q    SR RIVNKIMET  + LP    EG +ELRKIAVRFEEK+F  A++Q++Y
Sbjct: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 78  LRKISLKMLTMETKTQPPMGNS 100
           LR+I +KML METK+Q   G+S
Sbjct: 64  LRQICMKMLNMETKSQNAAGSS 85

[Close]
BLAST of CsaV3_7G006150 vs. TAIR10
Match: AT2G10440.1 (unknown protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 23/76 (30.26%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 3  NNNWRPTQA---VEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 62
          N NW+P +     +     +DWRSQ +P+ RQ++++KI+E  K       +  +++   I
Sbjct: 4  NTNWKPNEQGGNRDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---I 63

Query: 63 AVRFEEKIFTAATSQS 76
          A +FEE  ++ AT ++
Sbjct: 64 ASKFEENFYSIATDKT 76

[Close]
BLAST of CsaV3_7G006150 vs. Swiss-Prot
Match: sp|F4I171|MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.5e-34
Identity = 72/107 (67.29%), Postives = 87/107 (81.31%), Query Frame = 0 

Query: 1   MDNNNWRPT-QAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 60
           MDNNNWRP+    EP M+T DWR+QL PDSRQ+IVNKIMETLK+HLP SG EG++ELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIEN 107
           A RFEEKIF+ A +Q+DYLRKIS+KMLTMETK+Q   G+S  +   N
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAAN 107

[Close]
BLAST of CsaV3_7G006150 vs. Swiss-Prot
Match: sp|Q9SHV7|MD15C_ARATH (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana OX=3702 GN=MED15C PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-04
Identity = 23/76 (30.26%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 3  NNNWRPTQA---VEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 62
          N NW+P +     +     +DWRSQ +P+ RQ++++KI+E  K       +  +++   I
Sbjct: 4  NTNWKPNEQGGNRDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---I 63

Query: 63 AVRFEEKIFTAATSQS 76
          A +FEE  ++ AT ++
Sbjct: 64 ASKFEENFYSIATDKT 76

[Close]
BLAST of CsaV3_7G006150 vs. TrEMBL
Match: tr|A0A1S3C0H1|A0A1S3C0H1_CUCME (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC103495458 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.7e-43
Identity = 93/103 (90.29%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MD NNWRPTQ  EPGME  DWRSQLQPDSR RIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 104
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQP MGN L  N
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSN 103

[Close]
BLAST of CsaV3_7G006150 vs. TrEMBL
Match: tr|A0A2K3P4N0|A0A2K3P4N0_TRIPR (Mediator of RNA polymerase II transcription subunit 15a-like protein OS=Trifolium pratense OX=57577 GN=L195_g006813 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 9.4e-38
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRP Q  EP M+T DWR QLQP+SRQRIVNKIM+TLKRHLPVSGQEGL ELRKIA
Sbjct: 1   MDNNNWRPNQGAEPNMDTNDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNI-ENELG 110
            RFEEKIFTAATSQSDYLRKISLKMLTMETK+Q   G ++  NI  N++G
Sbjct: 61  QRFEEKIFTAATSQSDYLRKISLKMLTMETKSQ---GTTMANNIPPNQVG 107

[Close]
BLAST of CsaV3_7G006150 vs. TrEMBL
Match: tr|W9RBX9|W9RBX9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025703 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRP Q  EP M+ VDWR+QLQPDSRQRIVNKIM+TLK+HLP SGQEGL EL+KIA
Sbjct: 1   MDNNNWRPIQGGEPAMDAVDWRTQLQPDSRQRIVNKIMDTLKKHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 104
            RFEEKI+TAATSQSDYLRKISLKMLTMETK+Q  + NSL  N
Sbjct: 61  ERFEEKIYTAATSQSDYLRKISLKMLTMETKSQNSIPNSLPTN 103

[Close]
BLAST of CsaV3_7G006150 vs. TrEMBL
Match: tr|G7IM96|G7IM96_MEDTR (Transcription cofactor, putative OS=Medicago truncatula OX=3880 GN=11442044 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.1e-37
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MD NNWRP Q  EP M+T DWR QLQP+SRQRIVNKIM+TLKRHLPVSGQEGL ELRKIA
Sbjct: 1   MDTNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 104
            RFEEKI+TAATSQSDYLRKISLKMLTMETK+Q  + N++  N
Sbjct: 61  QRFEEKIYTAATSQSDYLRKISLKMLTMETKSQGTISNNIPPN 103

[Close]
BLAST of CsaV3_7G006150 vs. TrEMBL
Match: tr|A0A2P5EWW4|A0A2P5EWW4_9ROSA (Coactivator CBP, KIX domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_140690 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.7e-37
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 0 

Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRP Q  EP M+T DWR+QLQPDSRQRIVNKIM+TLK+HLP SGQEGL EL+KIA
Sbjct: 1   MDNNNWRPVQGGEPTMDTTDWRTQLQPDSRQRIVNKIMDTLKKHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 104
            RFEEKI+TAATSQSDYLRKISLKMLTMETK+Q  + N+L  N
Sbjct: 61  ERFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIPNALPSN 103

The following BLAST results are available for this feature:
BLAST of CsaV3_7G006150 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011658765.11.2e-4797.09PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis sati... [more]
XP_008455247.11.5e-4290.29PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis melo... [more]
XP_022963528.14.7e-4186.41mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
XP_023553730.14.7e-4186.41mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub... [more]
XP_022967562.16.2e-4186.41mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
BLAST of CsaV3_7G006150 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G15780.13.6e-3567.29unknown protein[more]
AT1G15790.14.3e-2059.76unknown protein[more]
AT2G10440.11.3e-0530.26unknown protein[more]
BLAST of CsaV3_7G006150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4I171|MD15A_ARATH6.5e-3467.29Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
sp|Q9SHV7|MD15C_ARATH2.4e-0430.26Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ... [more]
BLAST of CsaV3_7G006150 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C0H1|A0A1S3C0H1_CUCME9.7e-4390.29mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 ... [more]
tr|A0A2K3P4N0|A0A2K3P4N0_TRIPR9.4e-3878.18Mediator of RNA polymerase II transcription subunit 15a-like protein OS=Trifoliu... [more]
tr|W9RBX9|W9RBX9_9ROSA1.2e-3779.61Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025703 PE=4 SV=1[more]
tr|G7IM96|G7IM96_MEDTR2.1e-3778.64Transcription cofactor, putative OS=Medicago truncatula OX=3880 GN=11442044 PE=4... [more]
tr|A0A2P5EWW4|A0A2P5EWW4_9ROSA4.7e-3778.64Coactivator CBP, KIX domain containing protein OS=Trema orientalis OX=63057 GN=T... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR036529KIX_dom_sf
IPR036546MED15_KIX
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003712 transcription cofactor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G006150.1CsaV3_7G006150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.246.20coord: 19..96
e-value: 3.3E-23
score: 83.5
NoneNo IPR availablePANTHERPTHR33137FAMILY NOT NAMEDcoord: 16..100
NoneNo IPR availablePANTHERPTHR33137:SF4F7H2.13 PROTEIN-RELATEDcoord: 16..100
IPR036546Mediator complex subunit 15, KIX domainPFAMPF16987KIX_2coord: 19..98
e-value: 2.8E-40
score: 136.1
IPR036529Coactivator CBP, KIX domain superfamilySUPERFAMILYSSF47040Kix domain of CBP (creb binding protein)coord: 20..94

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G006150Carg23989Silver-seed gourdcarcucB0772
CsaV3_7G006150Cla009435Watermelon (97103) v1cucwmB586
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G006150Silver-seed gourdcarcucB0677
CsaV3_7G006150Cucumber (Gy14) v2cgybcucB348
CsaV3_7G006150Cucumber (Gy14) v1cgycucB529
CsaV3_7G006150Cucurbita maxima (Rimu)cmacucB0171
CsaV3_7G006150Cucurbita maxima (Rimu)cmacucB0638
CsaV3_7G006150Cucurbita maxima (Rimu)cmacucB0642
CsaV3_7G006150Cucurbita moschata (Rifu)cmocucB0160
CsaV3_7G006150Cucurbita moschata (Rifu)cmocucB0627
CsaV3_7G006150Cucurbita moschata (Rifu)cmocucB0622
CsaV3_7G006150Cucurbita pepo (Zucchini)cpecucB0322
CsaV3_7G006150Cucurbita pepo (Zucchini)cpecucB0326
CsaV3_7G006150Cucurbita pepo (Zucchini)cpecucB0868
CsaV3_7G006150Wild cucumber (PI 183967)cpicucB415
CsaV3_7G006150Bottle gourd (USVL1VR-Ls)cuclsiB534
CsaV3_7G006150Bottle gourd (USVL1VR-Ls)cuclsiB555
CsaV3_7G006150Melon (DHL92) v3.5.1cucmeB548
CsaV3_7G006150Melon (DHL92) v3.6.1cucmedB536
CsaV3_7G006150Watermelon (Charleston Gray)cucwcgB551
CsaV3_7G006150Watermelon (97103) v2cucwmbB597
CsaV3_7G006150Wax gourdcucwgoB686