CmoCh11G015020 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G015020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription cofactor, putative
Location	Cmo_Chr11 : 10662604 .. 10665039 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATGTATGATTTCTTGCTTCTTTGAGAAGTTTGTCTGAGATTTTGTAACTTTTTGTGTTCATAGTTCGCTGCTTAGATTAGTTACTATGTGATGGTTTTCTGAATTAAGCTATGAACGGCAAAACCTTTTTCTACCTTTTCTTAAATTTGTGTTTAACTGATGGATTCGAACTGATTTTTCCAAAACCTTATCGAAGATTGTTTGGAGAGAATTCCACGTTGGGTAATTAAGATGATCCTAAGGATTAGGCCTTTTGGGGTTCCGAAAAGTAAAAGCTACGAGAGGTTATGCTCAAAGTGGAAAATATCATACAATTTTAGAGAGTCGTGATTCCTAACTTGGTATTAGAGTCATGAGAATCTTCAAATGTCGAACAAAGAAGTTGTGAGCCTTGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAGAGAGTGTACTCTGTTCGAGGGCTCCAGAGAAAGAAATCAAGGGTGTACTTTGTTTGAGGGCTCCAAAGAAAGGAGTCGAGCCTCGTTTAAGAGGAGATTGTTCTTGAGGGCTACATAGTTCTCAGGAGAGTCTCTATAGTGTAGTTACTTTGTTCGAGGGCTCCAGAAAAAGTAGTCGAGCCTCGTTTAAGGGGAAATTGTTCTTGAGAGCTACATAGTTCTCAAGAGAGGTTCTATAGTGTAGTTTGTTCGTGGGAAGGATCGTTGAGGATTGGTGAGAGAGTTGGTGATTTAAAATTATCCCGTTCACTTTTCCATTTCTGGTTTGAAGATGTGGTAGGTTAGATTTTGTGGATGCGGTTCCTATTTGTTTCTTCAAGTGTTACCCCTTCATTGAACATAAGACGAATATCTTATTTGGAGCAGCATGGACTCTATTGAATTTTCCTCTAACTGTTCTAAAGTATCGTGACATCCCATATTGGTTGGAGAGTATGGAGAGGGGAATGAAACATTCGTCGTAATGGTGTAGAAACCTCTCCTTAGCAGATGCATTTTAAAATCGCGAGACTGACAACGATACTTAACGGGCCAAAGCGGACAATATATTTTAGTGGTGAGGTTAGGCTGTTACAAATGGTACCAAAATCACCTAGCGAGGATGCTAGACCCTTCAGGGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGGGGAACCCTAGACCCTCAAGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGAACGAAACATTCCTCGTAAGGGTGTGGAGACCTCTCCCTAGTAGACACGTTTTAAAACCGCAAGATTGACAGCGATACGTAACGAGTCAAAGCGGACAATATATTTTAGCGGTGGGCTTGGGCTGTTATAAATGGTACCAGAGTCAAACACCGGACAGTAAACCAACAAAGACGCTAGGCCCTGTTCTCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGAATGAAACATTCCTCGTAAGGGTGTGGAAACCTCCATAGTAAATTCGTTTTAAAACGGCGATACATAACAAGTCAAATCATATAATATCTGCTAGCAGGGAGCTTAAGTTGTTACACTAATATTTTGAATCATGGATGTGGGTTACAGCTATAGTTTTTTCGCTCCCGAACAGCTTCACGTGCTTTTGCGTTTAATAAACTTGTCAGCCACCATCTTTTCCATTTTTATGTAGAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGGTACTTGCTGCTCTCACTTGTATAAAGCCCTGATCTATTATGCTATCTACTAAATACAACACTGAGTACTCACCATTTCTATATTGAACCTCTAATTTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAGTCAGAGAACATCCACAATGACAATGTTTCTTCTAATGTATTTACCAACTCTCAGAGGCCAATATACTTTATTGGCTAATAAGGTAAATGAGTCTACTATTAGAACGTCTAGAACGTCTTAGTATGTCCTTAGTATGTCCTGAGTATGTCTTGAGTATGTCTTAGTGTTGGAATGAGATATTATATGATAGTCTTAGTACGTCTTAATGTTGGAATAGAACTGTTCTGAATCTTGAATGTTTATTATGTTAGTCTTAGTACGTCTTAGTGTTATGAGATATTATATGATAATTAGAACTGTTCTAAATCGTGAATGTTTATTGAGAACTGTTCTGAATCTTGAATG

mRNA sequence

ATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAGTCAGAGAACATCCACAATGACAATGTTTCTTCTAATGTATTTACCAACTCTCAGAGGCCAATATACTTTATTGGCTAATAAGGTAAATGAGTCTACTATTAGAACGTCTAGAACGTCTTAGTATGTCCTTAGTATGTCCTGAGTATGTCTTGAGTATGTCTTAGTGTTGGAATGAGATATTATATGATAGTCTTAGTACGTCTTAATGTTGGAATAGAACTGTTCTGAATCTTGAATGTTTATTATGTTAGTCTTAGTACGTCTTAGTGTTATGAGATATTATATGATAATTAGAACTGTTCTAAATCGTGAATGTTTATTGAGAACTGTTCTGAATCTTGAATG

Coding sequence (CDS)

ATGGATTCAAATCATTTAGGGCCTGCTCAAGGTGGAGAACCCGAAGTCGATGCCGGGGTTTGGAGGTCTCAGTTGCCGCCGGATTCTCGGCATCGAATTGTCAACAGCATAATTGAGACATTGAAGAGGCACATTCCTGTTTCTGGTCCTGAGGGATTGAATGAGTTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGGTTTACAATGCCGCAACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTGAGGATGCTTACTATGGAAACCAAGTCTGGGACGACCACTGCATTACCATCAGTGTCGGGCCCCGTGTCTTCCAATCAACCTTAG

Homology

[Close]

BLAST of CmoCh11G015020 vs. Swiss-Prot
Match: MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.7e-31
Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 1   MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKI 60
           MD+N+  P+   GEP +D G WR+QLPPDSR +IVN I+ETLK+H+P SGPEG+NELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTTTALPSVSGPVS 107
           A RFEEK+++ A +Q+DYLRKIS++MLTMETKS    G++ A+P+ +   S
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111

[Close]

BLAST of CmoCh11G015020 vs. TrEMBL
Match: F6I6N7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02320 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 1


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  PAQ  EP +D G WR+QLPPDSR RIVN I++TLKRH+PVSG EGL+ELRKIA
Sbjct: 1   MDTNNWRPAQA-EPAMDGGDWRTQLPPDSRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTT--TALPSVSGPVSSNQP 111
           VRFEEK+Y AATSQSDYLRKISL+MLTMETKS T   + LPS S   S N P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTAMPSNLPSNSAGNSKNPP 111

[Close]

BLAST of CmoCh11G015020 vs. TrEMBL
Match: W9RBX9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025703 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.8e-31
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P QGGEP +DA  WR+QL PDSR RIVN I++TLK+H+P SG EGL+EL+KIA
Sbjct: 1   MDNNNWRPIQGGEPAMDAVDWRTQLQPDSRQRIVNKIMDTLKKHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSN 109
            RFEEK+Y AATSQSDYLRKISL+MLTMETKS  +      + PVS+N
Sbjct: 61  ERFEEKIYTAATSQSDYLRKISLKMLTMETKSQNSIPNSLPTNPVSNN 108

[Close]

BLAST of CmoCh11G015020 vs. TrEMBL
Match: M5W7P2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000277mg PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-30
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P Q GE  +DAG WRSQL PDSR RIVN I++TLKRH+P SG EGL EL+KIA
Sbjct: 1   MDTNNWRPPQVGEAPMDAGDWRSQLQPDSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPV-SSNQP 111
           VRFEEK+Y AATSQSDYLRKISL+MLTMETKS  T A    S    +SN+P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTMANSLQSNSAGNSNRP 111

[Close]

BLAST of CmoCh11G015020 vs. TrEMBL
Match: G7IM96_MEDTR (Transcription cofactor, putative OS=Medicago truncatula GN=MTR_2g104400 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-30
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P QG EP +D   WR QL P+SR RIVN I++TLKRH+PVSG EGL+ELRKIA
Sbjct: 1   MDTNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTA---LPSVSGPVSSNQP 111
            RFEEK+Y AATSQSDYLRKISL+MLTMETKS  T +    P+  GP  SNQP
Sbjct: 61  QRFEEKIYTAATSQSDYLRKISLKMLTMETKSQGTISNNIPPNQVGP--SNQP 111

[Close]

BLAST of CmoCh11G015020 vs. TrEMBL
Match: A0A059A869_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00090 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-30
Identity = 77/119 (64.71%), Postives = 86/119 (72.27%), Query Frame = 1


Query: 1   MDSNHLGPAQ-------GGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGL 60
           MD+N+  P         G E  +D G WR QLPP+SR RIVN I+ETLKRH+PVSGPEGL
Sbjct: 2   MDNNNWRPTPPAGVGGGGAEAALDGGDWRGQLPPESRDRIVNKIMETLKRHLPVSGPEGL 61

Query: 61  NELRKIAVRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTT--TALPSVSGPVSSNQP 111
            EL+KIAVRFEEK+Y AATSQSDYLRKISL+MLTMETKS  T   ALPS     SS  P
Sbjct: 62  QELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNTIPNALPSNPAGNSSKDP 120

[Close]

BLAST of CmoCh11G015020 vs. TAIR10
Match: AT1G15780.1 (AT1G15780.1 unknown protein)

HSP 1 Score: 134.0 bits (336), Expect = 5.5e-32
Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 1   MDSNHLGPA-QGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKI 60
           MD+N+  P+   GEP +D G WR+QLPPDSR +IVN I+ETLK+H+P SGPEG+NELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKVYNAATSQSDYLRKISLRMLTMETKS----GTTTALPSVSGPVS 107
           A RFEEK+++ A +Q+DYLRKIS++MLTMETKS    G++ A+P+ +   S
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAANNGTS 111

[Close]

BLAST of CmoCh11G015020 vs. TAIR10
Match: AT1G15790.1 (AT1G15790.1 unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 6.3e-20
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1


Query: 19 GVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIAVRFEEKVYNAATSQSDYL 78
          G WR+Q P  SR RIVN I+ET  + +P   PEG NELRKIAVRFEEK++N A++Q++YL
Sbjct: 5  GDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEYL 64

Query: 79 RKISLRMLTMETKS 93
          R+I ++ML METKS
Sbjct: 65 RQICMKMLNMETKS 78

[Close]

BLAST of CmoCh11G015020 vs. NCBI nr
Match: gi|659110481|ref|XP_008455247.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 6.5e-35
Identity = 80/111 (72.07%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P QGGEP ++AG WRSQL PDSRHRIVN I+ETLKRH+PVSG EGL+ELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGP-VSSNQP 111
           VRFEEK++ AATSQSDYLRKISL+MLTMETK+  T   P  S P V SN+P
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSNPMVPSNKP 111

[Close]

BLAST of CmoCh11G015020 vs. NCBI nr
Match: gi|731436010|ref|XP_003634891.2| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like [Vitis vinifera])

HSP 1 Score: 146.7 bits (369), Expect = 2.3e-32
Identity = 79/112 (70.54%), Postives = 90/112 (80.36%), Query Frame = 1


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  PAQ  EP +D G WR+QLPPDSR RIVN I++TLKRH+PVSG EGL+ELRKIA
Sbjct: 1   MDTNNWRPAQA-EPAMDGGDWRTQLPPDSRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTT--TALPSVSGPVSSNQP 111
           VRFEEK+Y AATSQSDYLRKISL+MLTMETKS T   + LPS S   S N P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTAMPSNLPSNSAGNSKNPP 111

[Close]

BLAST of CmoCh11G015020 vs. NCBI nr
Match: gi|764563456|ref|XP_011461615.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 142.1 bits (357), Expect = 5.7e-31
Identity = 75/112 (66.96%), Postives = 88/112 (78.57%), Query Frame = 1


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P  GGEP +DAG WRSQL  DSR RIVN I++TLKRH+P SG EGL+EL+KIA
Sbjct: 1   MDTNNWRPPPGGEPAMDAGDWRSQLQADSRQRIVNKIMDTLKRHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTT--TALPSVSGPVSSNQP 111
           VRFEEK+Y AATSQSDYLRKISL+MLTME+KS  T   +LPS S   S+  P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNTMGNSLPSNSAGNSNRPP 112

[Close]

BLAST of CmoCh11G015020 vs. NCBI nr
Match: gi|764563459|ref|XP_011461616.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 142.1 bits (357), Expect = 5.7e-31
Identity = 75/112 (66.96%), Postives = 88/112 (78.57%), Query Frame = 1


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P  GGEP +DAG WRSQL  DSR RIVN I++TLKRH+P SG EGL+EL+KIA
Sbjct: 1   MDTNNWRPPPGGEPAMDAGDWRSQLQADSRQRIVNKIMDTLKRHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTT--TALPSVSGPVSSNQP 111
           VRFEEK+Y AATSQSDYLRKISL+MLTME+KS  T   +LPS S   S+  P
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNTMGNSLPSNSAGNSNRPP 112

[Close]

BLAST of CmoCh11G015020 vs. NCBI nr
Match: gi|703101333|ref|XP_010097158.1| (hypothetical protein L484_025703 [Morus notabilis])

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-30
Identity = 71/108 (65.74%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 1   MDSNHLGPAQGGEPEVDAGVWRSQLPPDSRHRIVNSIIETLKRHIPVSGPEGLNELRKIA 60
           MD+N+  P QGGEP +DA  WR+QL PDSR RIVN I++TLK+H+P SG EGL+EL+KIA
Sbjct: 1   MDNNNWRPIQGGEPAMDAVDWRTQLQPDSRQRIVNKIMDTLKKHLPFSGQEGLHELKKIA 60

Query: 61  VRFEEKVYNAATSQSDYLRKISLRMLTMETKSGTTTALPSVSGPVSSN 109
            RFEEK+Y AATSQSDYLRKISL+MLTMETKS  +      + PVS+N
Sbjct: 61  ERFEEKIYTAATSQSDYLRKISLKMLTMETKSQNSIPNSLPTNPVSNN 108

The following BLAST results are available for this feature:

BLAST of CmoCh11G015020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MD15A_ARATH	9.7e-31	58.56	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]

BLAST of CmoCh11G015020 vs. TrEMBL


Match Name	E-value	Identity	Description
F6I6N7_VITVI	1.6e-32	70.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02320 PE=4 SV=...	[more]
W9RBX9_9ROSA	8.8e-31	65.74	Uncharacterized protein OS=Morus notabilis GN=L484_025703 PE=4 SV=1	[more]
M5W7P2_PRUPE	2.0e-30	67.57	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000277mg PE=4 SV=1	[more]
G7IM96_MEDTR	2.0e-30	66.37	Transcription cofactor, putative OS=Medicago truncatula GN=MTR_2g104400 PE=4 SV=...	[more]
A0A059A869_EUCGR	2.6e-30	64.71	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00090 PE=4 SV=1	[more]

BLAST of CmoCh11G015020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15780.1	5.5e-32	58.56	unknown protein	[more]
AT1G15790.1	6.3e-20	60.81	unknown protein	[more]

BLAST of CmoCh11G015020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110481\|ref\|XP_008455247.1\|	6.5e-35	72.07	PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [C...	[more]
gi\|731436010\|ref\|XP_003634891.2\|	2.3e-32	70.54	PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like [Vitis v...	[more]
gi\|764563456\|ref\|XP_011461615.1\|	5.7e-31	66.96	PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [F...	[more]
gi\|764563459\|ref\|XP_011461616.1\|	5.7e-31	66.96	PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X2 [F...	[more]
gi\|703101333\|ref\|XP_010097158.1\|	1.3e-30	65.74	hypothetical protein L484_025703 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003101	Coactivator CBP, KIX domain

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G015020.1	CmoCh11G015020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003101	Coactivator CBP, KIX domain	GENE3D	G3DSA:1.10.246.20		coord: 21..91 score: 1.
IPR003101	Coactivator CBP, KIX domain	PFAM	PF16987	KIX_2	coord: 20..94 score: 5.5
IPR003101	Coactivator CBP, KIX domain	unknown	SSF47040	Kix domain of CBP (creb binding protein)	coord: 20..90 score: 3.9
None	No IPR available	PANTHER	PTHR33137	FAMILY NOT NAMED	coord: 1..92 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G015020	CmaCh19G002810	Cucurbita maxima (Rimu)	cmacmoB493
CmoCh11G015020	CmaCh11G016240	Cucurbita maxima (Rimu)	cmacmoB117
CmoCh11G015020	MELO3C018676	Melon (DHL92) v3.5.1	cmomeB085
CmoCh11G015020	ClCG09G013450	Watermelon (Charleston Gray)	cmowcgB068
CmoCh11G015020	CSPI07G05180	Wild cucumber (PI 183967)	cmocpiB137
CmoCh11G015020	Lsi03G008060	Bottle gourd (USVL1VR-Ls)	cmolsiB104
CmoCh11G015020	Cp4.1LG04g06860	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G015020	Cp4.1LG15g02490	Cucurbita pepo (Zucchini)	cmocpeB094
CmoCh11G015020	MELO3C018677.2	Melon (DHL92) v3.6.1	cmomedB091
CmoCh11G015020	CsaV3_7G006140	Cucumber (Chinese Long) v3	cmocucB0160
CmoCh11G015020	Cla97C09G176100	Watermelon (97103) v2	cmowmbB132
CmoCh11G015020	CsGy7G004750	Cucumber (Gy14) v2	cgybcmoB881
CmoCh11G015020	Carg24582	Silver-seed gourd	carcmoB0889
CmoCh11G015020	Carg23989	Silver-seed gourd	carcmoB1000

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G015020	CmoCh19G003080	Cucurbita moschata (Rifu)	cmocmoB109

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G015020	Watermelon (97103) v2	cmowmbB136
CmoCh11G015020	Wax gourd	cmowgoB0118
CmoCh11G015020	Cucumber (Gy14) v1	cgycmoB0947
CmoCh11G015020	Cucumber (Chinese Long) v2	cmocuB138
CmoCh11G015020	Watermelon (Charleston Gray)	cmowcgB072
CmoCh11G015020	Watermelon (97103) v1	cmowmB074