Carg23949 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23949
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_253 : 112027 .. 112560 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGCCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGTAAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGATGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCAACCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCTTACAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTTCTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGCGTGTCTTGGTGGTGGTGAAGTGA

mRNA sequence

ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGCCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGTAAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGATGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCAACCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCTTACAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTTCTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGCGTGTCTTGGTGGTGGTGAAGTGA

Coding sequence (CDS)

ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGCCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGTAAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGATGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCAACCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCTTACAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTTCTACGCTTCGAATTCATGTTCTCTGAATTCTCCGGCGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGCGTGTCTTGGTGGTGGTGAAGTGA

Protein sequence

MEHSTTTTLFFILLIVHLAGAAMPSDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPTPSPPPPPVPVAASSHSPPPPAYKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPAFLWALFLFHLVRVLVVVK

Homology

[Close]

BLAST of Carg23949 vs. NCBI nr
Match: XP_023536686.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-04
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 149 ASNSCSLNSPAFLWALFLFHLVRVLVVVK 178
           ASNSCSLNSPAFLWALFLFHLV VLVVVK
Sbjct: 149 ASNSCSLNSPAFLWALFLFHLVCVLVVVK 177

[Close]

BLAST of Carg23949 vs. NCBI nr
Match: XP_022951103.1 (extensin-3-like [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 149 ASNSCSLNSPAFLWALFLFHLVRVLVVVK 178
           ASNSCSLNSP FLWALFLFHLV VLVVVK
Sbjct: 149 ASNSCSLNSPVFLWALFLFHLVCVLVVVK 177

The following BLAST results are available for this feature:

BLAST of Carg23949 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536686.1	1.3e-04	96.55	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022951103.1	3.7e-04	93.10	extensin-3-like [Cucurbita moschata]	[more]

BLAST of Carg23949 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg23949 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23949 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23949-RA	Carg23949-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..104

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23949	Cla021988	Watermelon (97103) v1	carwmB0694
Carg23949	Csa6G363610	Cucumber (Chinese Long) v2	carcuB0718
Carg23949	MELO3C011466	Melon (DHL92) v3.5.1	carmeB0695
Carg23949	ClCG08G010010	Watermelon (Charleston Gray)	carwcgB0673
Carg23949	CSPI06G19260	Wild cucumber (PI 183967)	carcpiB0733
Carg23949	CmaCh12G006490	Cucurbita maxima (Rimu)	carcmaB0975
Carg23949	CmoCh12G005880	Cucurbita moschata (Rifu)	carcmoB0948
Carg23949	Lsi08G008570	Bottle gourd (USVL1VR-Ls)	carlsiB636
Carg23949	Cp4.1LG07g05990	Cucurbita pepo (Zucchini)	carcpeB0976
Carg23949	CsGy6G018710	Cucumber (Gy14) v2	carcgybB0695
Carg23949	MELO3C011466.2	Melon (DHL92) v3.6.1	carmedB0708
Carg23949	CsaV3_6G032150	Cucumber (Chinese Long) v3	carcucB0736

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23949	Wax gourd	carwgoB0820
Carg23949	Silver-seed gourd	carcarB166
Carg23949	Cucumber (Gy14) v1	carcgyB0779
Carg23949	Cucurbita maxima (Rimu)	carcmaB0977
Carg23949	Cucurbita moschata (Rifu)	carcmoB0950
Carg23949	Watermelon (97103) v2	carwmbB0725