Lsi08G008570 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi08G008570
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 16985120 .. 16985638 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACATTTCTCTTCCCTTCTCATTCTCCTGTTCTTCCACCTCGCCGGAGCTACGGCGGCAGCAGCCGAAGACGACCATGTGGTCGAGGTGGTTCCCCCGGTTAGCCTTCTTTGTATCAGCGAATGTTCAACTTGCCCTGCCATATGTGCGCCACCGCCGCCGCCGCCCATGGTGGTGCTCAAGTCACCCCCGCCTGTGACCCATGTGCCACCACTGGCTTACTTTCCACTCAATTCACCCCCACCCCGACCAACCCCCTCTCCACCGCCGGCGGCGGCGGCTGCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCAGCGACGACGGCGGCGCCTCATGGAAATACGAATGCCAATTCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTTGGGGGTTTGTTTCTCTTCCATTTGATGTTATCTTCATGGTGA

mRNA sequence

ATGGAACATTTCTCTTCCCTTCTCATTCTCCTGTTCTTCCACCTCGCCGGAGCTACGGCGGCAGCAGCCGAAGACGACCATGTGGTCGAGGTGGTTCCCCCGGTTAGCCTTCTTTGTATCAGCGAATGTTCAACTTGCCCTGCCATATGTGCGCCACCGCCGCCGCCGCCCATGGTGGTGCTCAAGTCACCCCCGCCTGTGACCCATGTGCCACCACTGGCTTACTTTCCACTCAATTCACCCCCACCCCGACCAACCCCCTCTCCACCGCCGGCGGCGGCGGCTGCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCAGCGACGACGGCGGCGCCTCATGGAAATACGAATGCCAATTCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTTGGGGGTTTGTTTCTCTTCCATTTGATGTTATCTTCATGGTGA

Coding sequence (CDS)

ATGGAACATTTCTCTTCCCTTCTCATTCTCCTGTTCTTCCACCTCGCCGGAGCTACGGCGGCAGCAGCCGAAGACGACCATGTGGTCGAGGTGGTTCCCCCGGTTAGCCTTCTTTGTATCAGCGAATGTTCAACTTGCCCTGCCATATGTGCGCCACCGCCGCCGCCGCCCATGGTGGTGCTCAAGTCACCCCCGCCTGTGACCCATGTGCCACCACTGGCTTACTTTCCACTCAATTCACCCCCACCCCGACCAACCCCCTCTCCACCGCCGGCGGCGGCGGCTGCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCAGCGACGACGGCGGCGCCTCATGGAAATACGAATGCCAATTCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTTGGGGGTTTGTTTCTCTTCCATTTGATGTTATCTTCATGGTGA

Protein sequence

MEHFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPPAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLMLSSW
BLAST of Lsi08G008570 vs. TrEMBL
Match: A0A0A0KD44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363610 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.8e-62
Identity = 139/184 (75.54%), Postives = 146/184 (79.35%), Query Frame = 1

Query: 3   HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPM-VVL 62
           HFSS+LILL   LA    A  ED  VVEVVPPVSLLCISECSTCP ICAPPPPPP  +VL
Sbjct: 9   HFSSILILLILRLA---RAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPPPPIVL 68

Query: 63  KSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFN 122
           KSPPPV HVPPLAYFPLNSPPPRPT SPPP           A A +SHSPPPPAF+YYFN
Sbjct: 69  KSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAFRYYFN 128

Query: 123 LPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLM 173
           LPPPPPVLIPVPVPP+ TA PHGNTN+N+YNYYFYAP SSS  PSLP A F GLFLFHLM
Sbjct: 129 LPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLFLFHLM 188

BLAST of Lsi08G008570 vs. TrEMBL
Match: A0A078DPE5_BRANA (BnaC02g04170D protein OS=Brassica napus GN=BnaC02g04170D PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-12
Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1

Query: 22  AAEDDHVVEVVPPVSLLCISECSTCPAICAPPP--------PPPMVVLKSPPPVTHVPPL 81
           A+   H  +V+ P   LCISECSTCP IC+PPP        PPP   L S  P+   PP 
Sbjct: 739 ASSPSHQTDVLTP---LCISECSTCPTICSPPPSKPSPSTSPPPSPSLPSSSPLPQPPPS 798

Query: 82  AYFPLNSPPPRPTPSPPPAAA----AASHSPPPPAFKYYFNLPPPPPVLIPV----PVPP 141
              P +SPPP P    PPA +         PPPP F Y+ + PPPPP+   V    P PP
Sbjct: 799 PSLPSSSPPPPPRKHSPPAVSPPPLITVIQPPPPRFDYFQSTPPPPPLASDVKGSPPSPP 858

Query: 142 ATTAAPHGNTNANSYNY-YFYAPTSSSPSLPAAFFGGLFLFHLMLS 171
           +    P G  + N Y Y YFY  ++++    ++F   LF F  + S
Sbjct: 859 SPKGQPRGQQDPNPYPYFYFYTASNATSLFSSSFLTSLFYFLYLFS 901

BLAST of Lsi08G008570 vs. TrEMBL
Match: A0A0D3AIP4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-12
Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1

Query: 22  AAEDDHVVEVVPPVSLLCISECSTCPAICAPPP--------PPPMVVLKSPPPVTHVPPL 81
           A+   H  +V+ P   LCISECSTCP IC+PPP        PPP   L S  P+   PP 
Sbjct: 739 ASSPSHQTDVLTP---LCISECSTCPTICSPPPSKPSPSTSPPPSPSLPSSSPLPQPPPS 798

Query: 82  AYFPLNSPPPRPTPSPPPAAA----AASHSPPPPAFKYYFNLPPPPPVLIPV----PVPP 141
              P +SPPP P    PPA +         PPPP F Y+ + PPPPP+   V    P PP
Sbjct: 799 PSLPSSSPPPPPRKHSPPAVSPPPLITVIQPPPPRFDYFQSTPPPPPLASDVKGSPPSPP 858

Query: 142 ATTAAPHGNTNANSYNY-YFYAPTSSSPSLPAAFFGGLFLFHLMLS 171
           +    P G  + N Y Y YFY  ++++    ++F   LF F  + S
Sbjct: 859 SPKGQPRGQQDPNPYPYFYFYTASNATSLFSSSFLTSLFYFLYLFS 901

BLAST of Lsi08G008570 vs. TrEMBL
Match: A0A078CZA4_BRANA (BnaA03g33350D protein OS=Brassica napus GN=BnaA03g33350D PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-09
Identity = 67/182 (36.81%), Postives = 90/182 (49.45%), Query Frame = 1

Query: 7   LLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPP--------PPPM 66
           L+I+    +    A+ + D   ++V+ P   LCISECSTCP IC+PPP        PPP 
Sbjct: 3   LIIITLMVMIIQVASTSSDQ--IDVLTP---LCISECSTCPTICSPPPSKPPPSTSPPPS 62

Query: 67  VVLKSPPPVTHVPPLAYFPLNSPPPRPTP---------SPPPAAAAASHSPPPPAFKYYF 126
             L S  P    PP    PL+SPPP P P         SPPP        PPPP F Y+ 
Sbjct: 63  PSLPSSSPPRPPPPSPSLPLSSPPPTPPPPHKRSPQPGSPPPLITVIQ--PPPPRFYYFE 122

Query: 127 NLPPPPPVLI-PVPVPPATTAAPHGNTNANSYNY-YFYAPTSSSPSLPAAFFGGLFLFHL 170
           + PPPPP+       PP+   +P G      Y Y YFY  ++++P L ++F   LF+  L
Sbjct: 123 STPPPPPLSSNGKGSPPSPPPSPKGQQPPYPYPYFYFYTASNATPLLSSSFLISLFISGL 177

BLAST of Lsi08G008570 vs. TrEMBL
Match: A0A0D3B0Q7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09
Identity = 66/183 (36.07%), Postives = 90/183 (49.18%), Query Frame = 1

Query: 7   LLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPP--------PPPM 66
           L+I+    +    A+ + D   ++++ P   LCISECSTCP IC+PPP        PPP 
Sbjct: 3   LIIITLMVMIIQVASTSSDQ--IDILTP---LCISECSTCPTICSPPPSKPSPSTSPPPS 62

Query: 67  VVLKSPPPVTHVPPLAYFPLNSPPPRPTP-------SPPPAAAAASHSPPPPAFKYYFNL 126
             L S  P    PP    PL+SPPP P P       SPPP        PPPP F Y+ + 
Sbjct: 63  PSLPSSSPPLPPPPSPSLPLSSPPPTPPPPHKRSPPSPPPPLITVIQ-PPPPRFYYFEST 122

Query: 127 PPPPPVLI----PVPVPPATTAAPHGNTNANSYNY-YFYAPTSSSPSLPAAFFGGLFLFH 170
           PPPPP+        P  P+   +P G      Y Y YFY  ++++  L ++F   LF+F 
Sbjct: 123 PPPPPLSSDGKGSPPSSPSPPPSPKGQQPPYPYPYFYFYTASNATSLLSSSFLISLFIFC 179

BLAST of Lsi08G008570 vs. TAIR10
Match: AT5G11990.1 (AT5G11990.1 proline-rich family protein)

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-10
Identity = 67/182 (36.81%), Postives = 85/182 (46.70%), Query Frame = 1

Query: 8   LILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPV 67
           LI++   L      A+       V+ P   LCISECSTCP IC+PPP         P P 
Sbjct: 3   LIVIIIALVMVMVVASSPSDQTNVLTP---LCISECSTCPTICSPPP-------SKPSPS 62

Query: 68  THVPPLAYFPLNSPPPRPTP---SPPPAAAAASHSP------PPPAFKYYFNLPPPPPVL 127
              PP    PL+S PP P P   SPPP + + S  P      PPP   YYF   PPPP L
Sbjct: 63  MSPPPSPSLPLSSSPPPPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYFESTPPPPPL 122

Query: 128 IP-----VPVPPATTAAPHGNTNANS---YNY-YFYAPTSSSPSLPAAFFGGLFLFHLML 172
            P      P  P++  +P G +       Y + YFY  T+S+ +L    F   FL  L++
Sbjct: 123 SPDGKGSPPSVPSSPPSPKGQSQGQQQPPYPFPYFYFYTASNATL---LFSSSFLIALVV 171

BLAST of Lsi08G008570 vs. NCBI nr
Match: gi|778715318|ref|XP_011657382.1| (PREDICTED: extensin-like [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 2.6e-62
Identity = 139/184 (75.54%), Postives = 146/184 (79.35%), Query Frame = 1

Query: 3   HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPM-VVL 62
           HFSS+LILL   LA    A  ED  VVEVVPPVSLLCISECSTCP ICAPPPPPP  +VL
Sbjct: 9   HFSSILILLILRLA---RAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPPPPIVL 68

Query: 63  KSPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFN 122
           KSPPPV HVPPLAYFPLNSPPPRPT SPPP           A A +SHSPPPPAF+YYFN
Sbjct: 69  KSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAFRYYFN 128

Query: 123 LPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLFLFHLM 173
           LPPPPPVLIPVPVPP+ TA PHGNTN+N+YNYYFYAP SSS  PSLP A F GLFLFHLM
Sbjct: 129 LPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLFLFHLM 188

BLAST of Lsi08G008570 vs. NCBI nr
Match: gi|659089438|ref|XP_008445508.1| (PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.5e-57
Identity = 132/174 (75.86%), Postives = 139/174 (79.89%), Query Frame = 1

Query: 3   HFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLK 62
           HFSS+LILL   LAGA   A ED  VV+VVPPVSLLCISECSTCP ICAPPPPPP  VLK
Sbjct: 9   HFSSILILLILPLAGA---APEDGRVVQVVPPVSLLCISECSTCPTICAPPPPPP-TVLK 68

Query: 63  SPPPVTHVPPLAYFPLNSPPPRPTPSPPP-----------AAAAASHSPPPPAFKYYFNL 122
           SPPPV HVPPLAYFPLNSPPPRPT SPPP           A A +SHSPPPPAF+YYFNL
Sbjct: 69  SPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPPPAFRYYFNL 128

Query: 123 PPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS--PSLPAAFFGGLF 164
           PPPPPVLIPVPVPP+ TAAP GNTN+N+YNYYFYAP SSS  PSLP AFFG  F
Sbjct: 129 PPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFFGVCF 178

BLAST of Lsi08G008570 vs. NCBI nr
Match: gi|731385032|ref|XP_010648362.1| (PREDICTED: extensin [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 6.4e-13
Identity = 63/141 (44.68%), Postives = 76/141 (53.90%), Query Frame = 1

Query: 32  VPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPP 91
           VPP  +LCIS+C+TCP IC+PPPPP        PP  H P  AY   +SPPP  +PSPPP
Sbjct: 40  VPPTGMLCISDCATCPVICSPPPPPSEYKPPHSPPSHHSPAPAYHS-HSPPPPSSPSPPP 99

Query: 92  AAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSS 151
            +      PPPP+F + ++ PPPP   I +P  PA  A   G        YYFYA  S S
Sbjct: 100 PS-----PPPPPSFYFSWDAPPPPFNYIGIPSGPAPPA--KGQPGYGYPYYYFYASNSFS 159

Query: 152 PSLPAAFFGGLFLFHLMLSSW 173
            S  A F    F FH+M   W
Sbjct: 160 LSFSAFFLFMAFSFHVMFFCW 172

BLAST of Lsi08G008570 vs. NCBI nr
Match: gi|674942430|emb|CDX91180.1| (BnaC02g04170D [Brassica napus])

HSP 1 Score: 79.7 bits (195), Expect = 5.4e-12
Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1

Query: 22  AAEDDHVVEVVPPVSLLCISECSTCPAICAPPP--------PPPMVVLKSPPPVTHVPPL 81
           A+   H  +V+ P   LCISECSTCP IC+PPP        PPP   L S  P+   PP 
Sbjct: 739 ASSPSHQTDVLTP---LCISECSTCPTICSPPPSKPSPSTSPPPSPSLPSSSPLPQPPPS 798

Query: 82  AYFPLNSPPPRPTPSPPPAAA----AASHSPPPPAFKYYFNLPPPPPVLIPV----PVPP 141
              P +SPPP P    PPA +         PPPP F Y+ + PPPPP+   V    P PP
Sbjct: 799 PSLPSSSPPPPPRKHSPPAVSPPPLITVIQPPPPRFDYFQSTPPPPPLASDVKGSPPSPP 858

Query: 142 ATTAAPHGNTNANSYNY-YFYAPTSSSPSLPAAFFGGLFLFHLMLS 171
           +    P G  + N Y Y YFY  ++++    ++F   LF F  + S
Sbjct: 859 SPKGQPRGQQDPNPYPYFYFYTASNATSLFSSSFLTSLFYFLYLFS 901

BLAST of Lsi08G008570 vs. NCBI nr
Match: gi|922426245|ref|XP_013619193.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Brassica oleracea var. oleracea])

HSP 1 Score: 79.7 bits (195), Expect = 5.4e-12
Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1

Query: 22  AAEDDHVVEVVPPVSLLCISECSTCPAICAPPP--------PPPMVVLKSPPPVTHVPPL 81
           A+   H  +V+ P   LCISECSTCP IC+PPP        PPP   L S  P+   PP 
Sbjct: 15  ASSPSHQTDVLTP---LCISECSTCPTICSPPPSKPSPSTSPPPSPSLPSSSPLPQPPPS 74

Query: 82  AYFPLNSPPPRPTPSPPPAAA----AASHSPPPPAFKYYFNLPPPPPVLIPV----PVPP 141
              P +SPPP P    PPA +         PPPP F Y+ + PPPPP+   V    P PP
Sbjct: 75  PSLPSSSPPPPPRKHSPPAVSPPPLITVIQPPPPRFDYFQSTPPPPPLASDVKGSPPSPP 134

Query: 142 ATTAAPHGNTNANSYNY-YFYAPTSSSPSLPAAFFGGLFLFHLMLS 171
           +    P G  + N Y Y YFY  ++++    ++F   LF F  + S
Sbjct: 135 SPKGQPRGQQDPNPYPYFYFYTASNATSLFSSSFLTSLFYFLYLFS 177

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KD44_CUCSA1.8e-6275.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363610 PE=4 SV=1[more]
A0A078DPE5_BRANA3.8e-1238.55BnaC02g04170D protein OS=Brassica napus GN=BnaC02g04170D PE=4 SV=1[more]
A0A0D3AIP4_BRAOL3.8e-1238.55Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078CZA4_BRANA3.0e-0936.81BnaA03g33350D protein OS=Brassica napus GN=BnaA03g33350D PE=4 SV=1[more]
A0A0D3B0Q7_BRAOL3.9e-0936.07Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G11990.14.1e-1036.81 proline-rich family protein[more]
Match NameE-valueIdentityDescription
gi|778715318|ref|XP_011657382.1|2.6e-6275.54PREDICTED: extensin-like [Cucumis sativus][more]
gi|659089438|ref|XP_008445508.1|1.5e-5775.86PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo][more]
gi|731385032|ref|XP_010648362.1|6.4e-1344.68PREDICTED: extensin [Vitis vinifera][more]
gi|674942430|emb|CDX91180.1|5.4e-1238.55BnaC02g04170D [Brassica napus][more]
gi|922426245|ref|XP_013619193.1|5.4e-1238.55PREDICTED: leucine-rich repeat extensin-like protein 3 [Brassica oleracea var. o... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G008570.1Lsi08G008570.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 45..57
score: 9.5E-11coord: 85..101
score: 9.5E-11coord: 61..82
score: 9.5E-11coord: 112..129
score: 9.5

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G008570Carg23949Silver-seed gourdcarlsiB636
Lsi08G008570CsaV3_6G032150Cucumber (Chinese Long) v3cuclsiB500
The following gene(s) are paralogous to this gene:

None