Lsi08G008570.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAACATTTCTCTTCCCTTCTCATTCTCCTGTTCTTCCACCTCGCCGGAGCTACGGCGGCAGCAGCCGAAGACGACCATGTGGTCGAGGTGGTTCCCCCGGTTAGCCTTCTTTGTATCAGCGAATGTTCAACTTGCCCTGCCATATGTGCGCCACCGCCGCCGCCGCCCATGGTGGTGCTCAAGTCACCCCCGCCTGTGACCCATGTGCCACCACTGGCTTACTTTCCACTCAATTCACCCCCACCCCGACCAACCCCCTCTCCACCGCCGGCGGCGGCGGCTGCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCAGCGACGACGGCGGCGCCTCATGGAAATACGAATGCCAATTCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTTGGGGGTTTGTTTCTCTTCCATTTGATGTTATCTTCATGGTGA ATGGAACATTTCTCTTCCCTTCTCATTCTCCTGTTCTTCCACCTCGCCGGAGCTACGGCGGCAGCAGCCGAAGACGACCATGTGGTCGAGGTGGTTCCCCCGGTTAGCCTTCTTTGTATCAGCGAATGTTCAACTTGCCCTGCCATATGTGCGCCACCGCCGCCGCCGCCCATGGTGGTGCTCAAGTCACCCCCGCCTGTGACCCATGTGCCACCACTGGCTTACTTTCCACTCAATTCACCCCCACCCCGACCAACCCCCTCTCCACCGCCGGCGGCGGCGGCTGCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCAGCGACGACGGCGGCGCCTCATGGAAATACGAATGCCAATTCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTTGGGGGTTTGTTTCTCTTCCATTTGATGTTATCTTCATGGTGA ATGGAACATTTCTCTTCCCTTCTCATTCTCCTGTTCTTCCACCTCGCCGGAGCTACGGCGGCAGCAGCCGAAGACGACCATGTGGTCGAGGTGGTTCCCCCGGTTAGCCTTCTTTGTATCAGCGAATGTTCAACTTGCCCTGCCATATGTGCGCCACCGCCGCCGCCGCCCATGGTGGTGCTCAAGTCACCCCCGCCTGTGACCCATGTGCCACCACTGGCTTACTTTCCACTCAATTCACCCCCACCCCGACCAACCCCCTCTCCACCGCCGGCGGCGGCGGCTGCATCTCATTCCCCGCCGCCTCCCGCATTCAAATATTATTTCAATTTGCCACCACCGCCGCCGGTGCTGATTCCAGTACCTGTGCCGCCAGCGACGACGGCGGCGCCTCATGGAAATACGAATGCCAATTCTTATAATTACTACTTTTACGCTCCGACATCGTCTTCTCCGTCTCTTCCGGCGGCGTTTTTTGGGGGTTTGTTTCTCTTCCATTTGATGTTATCTTCATGGTGA MEHFSSLLILLFFHLAGATAAAAEDDHVVEVVPPVSLLCISECSTCPAICAPPPPPPMVVLKSPPPVTHVPPLAYFPLNSPPPRPTPSPPPAAAAASHSPPPPAFKYYFNLPPPPPVLIPVPVPPATTAAPHGNTNANSYNYYFYAPTSSSPSLPAAFFGGLFLFHLMLSSW
BLAST of Lsi08G008570.1 vs. TrEMBL
Match: A0A0A0KD44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363610 PE=4 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 1.8e-62 Identity = 139/184 (75.54%), Postives = 146/184 (79.35%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. TrEMBL
Match: A0A078DPE5_BRANA (BnaC02g04170D protein OS=Brassica napus GN=BnaC02g04170D PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.8e-12 Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. TrEMBL
Match: A0A0D3AIP4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.8e-12 Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. TrEMBL
Match: A0A078CZA4_BRANA (BnaA03g33350D protein OS=Brassica napus GN=BnaA03g33350D PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.0e-09 Identity = 67/182 (36.81%), Postives = 90/182 (49.45%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. TrEMBL
Match: A0A0D3B0Q7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09 Identity = 66/183 (36.07%), Postives = 90/183 (49.18%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. TAIR10
Match: AT5G11990.1 (AT5G11990.1 proline-rich family protein) HSP 1 Score: 62.0 bits (149), Expect = 4.1e-10 Identity = 67/182 (36.81%), Postives = 85/182 (46.70%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. NCBI nr
Match: gi|778715318|ref|XP_011657382.1| (PREDICTED: extensin-like [Cucumis sativus]) HSP 1 Score: 246.9 bits (629), Expect = 2.6e-62 Identity = 139/184 (75.54%), Postives = 146/184 (79.35%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. NCBI nr
Match: gi|659089438|ref|XP_008445508.1| (PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo]) HSP 1 Score: 231.1 bits (588), Expect = 1.5e-57 Identity = 132/174 (75.86%), Postives = 139/174 (79.89%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. NCBI nr
Match: gi|731385032|ref|XP_010648362.1| (PREDICTED: extensin [Vitis vinifera]) HSP 1 Score: 82.8 bits (203), Expect = 6.4e-13 Identity = 63/141 (44.68%), Postives = 76/141 (53.90%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. NCBI nr
Match: gi|674942430|emb|CDX91180.1| (BnaC02g04170D [Brassica napus]) HSP 1 Score: 79.7 bits (195), Expect = 5.4e-12 Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1
BLAST of Lsi08G008570.1 vs. NCBI nr
Match: gi|922426245|ref|XP_013619193.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Brassica oleracea var. oleracea]) HSP 1 Score: 79.7 bits (195), Expect = 5.4e-12 Identity = 64/166 (38.55%), Postives = 83/166 (50.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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