CSPI06G19260 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G19260
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionConcanavalin A-like lectin/glucanase, subgroup
LocationChr6 : 17410352 .. 17412145 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCAAATTCATAACCAACCCCTTTTGTTCTAACTCTTCTTCTCCACTTCAATTCCCTCTTCTTCTTATTCATTACAAAGCTTCCTCTTTTCCACAGCCTATTCATCAATGGAACATTTCTCCAAAACCCTTCATTTCTCTTCCATTCTCATTCTTCTTATCCTCCGCCTCGCTCGAGCAGTGCCCGAAGACGGCCGTGTCGTCGAGGTCGTTCCTCCGGTTAGCCTTCTTTGTATCAGCGAATGTTCAACTTGCCCCACCATCTGCGCGCCACCACCACCACCGCCACCGCCCATTGTGCTCAAGTCACCTCCGCCGGTGCCTCATGTCCCACCACTGGCTTACTTTCCACTCAATTCACCCCCACCTCGACCAACCTCATCTCCACCCCCGCCGTGGCCTTCACCTCCGCCACCTCCGGCTACGGCGACGGCGGTTTCATCTCATTCCCCGCCGCCACCCGCATTCAGATATTATTTCAACTTGCCACCACCGCCACCGGTGCTGATTCCGGTACCTGTGCCGCCGTCGGCGACGGCTGGGCCTCATGGAAATACGAATAGTAATGCTTATAATTACTACTTTTATGCTCCGGCATCATCGTCTGCTCCTCCGTCGCTTCCGACGGCGCTTTTTTGGGGTTTGTTTCTCTTCCATTTGATGTTGTGTTCATGGTGAAAGGTTTGTATATTGATTTTCATGCATCTCTGATTAATGGTATTGGAGTATAAGTTTATAAGAAGGAAGATTAATGTTTTGGTAAGTAGAATTTTGGGAATGGTTATTTTTTAAAGTTTGGAATTTTTTCTTTTCTTTTTTATTTGAAATAAAGCTAAATATTTTTCATTGTTTAATCAATGGGTTTATGTAAATCCATCTATGAACATTTATGTTTTTTATAATTTGAATTACCTACTAATAACTATTATTTATTTTAAGTTAAATAGTTATGTTTGTCAAAAAAAAAATCATATCTAACGTGGAATGTATTCAAGATTTAAATTTGAACTTTTTCAAAATAGCCATTTATGTATACGATGGTTGGACATACGGCAATATACGTTACCACCTCCTCTCTAGTAGCTATGTGATGTAAAGATATGTTCGAAATTAATTAATTTATTACATTGCTTTTAAAGTGTTGTTTTTACACATATTTTGAAAAATAATATTGCCTTGAATCTCCTTAGTTACTTAGCTACGCTCTTCTTCTTCGCCCTCGTGATTTGGATTTAACTTTGTTCATCTTCTCTTCCTTAAATTTTCTTTAACCTCTCTTCATCATTTAGCCATCCATTAGCAGAGTGTCTTAAAATTTAAATTTACCTATACAAAAAAAAAAAAGAGTAAGTAATTAGAAGAGAGTGAAAGGATTATAACATTAACAACATAAATTTTAGGTTAAAAGAGAGAGAGAGATTAGATGGGTTAATTAGGTTAGAGGGGTGACAGAGAGATAGAGAGCACACAAAGCTTCGAGCATTGATATCATTTATTGAAAGTTAATAATGAATGAACACAACATTATATTTTGCATATGCAAGAAAACAACTATGTGTGCTCCCTCTCTTCTGTCACCCCCTAATTCTTTCTTTTTTCTTTTCTCGTGTTAGAAATAGACCGCATGCATCCGTTTTTTATAACGTTCACGTAAATGAAAATTTACTATGAGGTAAATTTTCTTAATAAAAAGAATTGAATTATTATTTTCTTTATCACGTACGAAATACGGACCAACGTATAGGATTAGGTGTAGTTTAGATCATGATAATTTTGATAAATATCATGAAAAAAA

mRNA sequence

ATGGAACATTTCTCCAAAACCCTTCATTTCTCTTCCATTCTCATTCTTCTTATCCTCCGCCTCGCTCGAGCAGTGCCCGAAGACGGCCGTGTCGTCGAGGTCGTTCCTCCGGTTAGCCTTCTTTGTATCAGCGAATGTTCAACTTGCCCCACCATCTGCGCGCCACCACCACCACCGCCACCGCCCATTGTGCTCAAGTCACCTCCGCCGGTGCCTCATGTCCCACCACTGGCTTACTTTCCACTCAATTCACCCCCACCTCGACCAACCTCATCTCCACCCCCGCCGTGGCCTTCACCTCCGCCACCTCCGGCTACGGCGACGGCGGTTTCATCTCATTCCCCGCCGCCACCCGCATTCAGATATTATTTCAACTTGCCACCACCGCCACCGGTGCTGATTCCGGTACCTGTGCCGCCGTCGGCGACGGCTGGGCCTCATGGAAATACGAATAGTAATGCTTATAATTACTACTTTTATGCTCCGGCATCATCGTCTGCTCCTCCGTCGCTTCCGACGGCGCTTTTTTGGGGTTTGTTTCTCTTCCATTTGATGTTGTGTTCATGGTGA

Coding sequence (CDS)

ATGGAACATTTCTCCAAAACCCTTCATTTCTCTTCCATTCTCATTCTTCTTATCCTCCGCCTCGCTCGAGCAGTGCCCGAAGACGGCCGTGTCGTCGAGGTCGTTCCTCCGGTTAGCCTTCTTTGTATCAGCGAATGTTCAACTTGCCCCACCATCTGCGCGCCACCACCACCACCGCCACCGCCCATTGTGCTCAAGTCACCTCCGCCGGTGCCTCATGTCCCACCACTGGCTTACTTTCCACTCAATTCACCCCCACCTCGACCAACCTCATCTCCACCCCCGCCGTGGCCTTCACCTCCGCCACCTCCGGCTACGGCGACGGCGGTTTCATCTCATTCCCCGCCGCCACCCGCATTCAGATATTATTTCAACTTGCCACCACCGCCACCGGTGCTGATTCCGGTACCTGTGCCGCCGTCGGCGACGGCTGGGCCTCATGGAAATACGAATAGTAATGCTTATAATTACTACTTTTATGCTCCGGCATCATCGTCTGCTCCTCCGTCGCTTCCGACGGCGCTTTTTTGGGGTTTGTTTCTCTTCCATTTGATGTTGTGTTCATGGTGA
Homology
[Close]
BLAST of CSPI06G19260 vs. TrEMBL
Match: A0A0A0KD44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363610 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 5.0e-98
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

Query: 1   MEHFSKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPP 60
           MEHFSKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPP
Sbjct: 1   MEHFSKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPP 60

Query: 61  PPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAF 120
           PPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAF
Sbjct: 61  PPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAF 120

Query: 121 RYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLF 180
           RYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLF
Sbjct: 121 RYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLF 180

Query: 181 LFHLMLCSW 190
           LFHLMLCSW
Sbjct: 181 LFHLMLCSW 189

[Close]
BLAST of CSPI06G19260 vs. TrEMBL
Match: A0A0D3AIP4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 74/193 (38.34%), Postives = 103/193 (53.37%), Query Frame = 1 

Query: 5   SKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPPPPIV 64
           SK +    I++++++ +  A     +   + P    LCISECSTCPTIC+PPP  P P  
Sbjct: 720 SKIIKMGLIIMVMVMGILVASSPSHQTDVLTP----LCISECSTCPTICSPPPSKPSPST 779

Query: 65  LKSPPPVPHVPPLAYFPLNSPPPRPT----SSPPPPWPSPPPPPATATAVSSHSPPPPAF 124
             SPPP P +P  +  PL  PPP P+    S PPPP    PP  +    ++   PPPP F
Sbjct: 780 --SPPPSPSLPSSS--PLPQPPPSPSLPSSSPPPPPRKHSPPAVSPPPLITVIQPPPPRF 839

Query: 125 RYYFNLPPPPPVLIPV----PVPPSATAGPHGNTNSNAYNYYFYAPASSSA---PPSLPT 184
            Y+ + PPPPP+   V    P PPS    P G  + N Y Y+++  AS++      S  T
Sbjct: 840 DYFQSTPPPPPLASDVKGSPPSPPSPKGQPRGQQDPNPYPYFYFYTASNATSLFSSSFLT 899

Query: 185 ALFWGLFLFHLML 187
           +LF+ L+LF L L
Sbjct: 900 SLFYFLYLFSLTL 904

[Close]
BLAST of CSPI06G19260 vs. TrEMBL
Match: A0A078DPE5_BRANA (BnaC02g04170D protein OS=Brassica napus GN=BnaC02g04170D PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-12
Identity = 74/193 (38.34%), Postives = 103/193 (53.37%), Query Frame = 1 

Query: 5   SKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPPPPIV 64
           SK +    I++++++ +  A     +   + P    LCISECSTCPTIC+PPP  P P  
Sbjct: 720 SKIIKMGLIIMVMVMGILVASSPSHQTDVLTP----LCISECSTCPTICSPPPSKPSPST 779

Query: 65  LKSPPPVPHVPPLAYFPLNSPPPRPT----SSPPPPWPSPPPPPATATAVSSHSPPPPAF 124
             SPPP P +P  +  PL  PPP P+    S PPPP    PP  +    ++   PPPP F
Sbjct: 780 --SPPPSPSLPSSS--PLPQPPPSPSLPSSSPPPPPRKHSPPAVSPPPLITVIQPPPPRF 839

Query: 125 RYYFNLPPPPPVLIPV----PVPPSATAGPHGNTNSNAYNYYFYAPASSSA---PPSLPT 184
            Y+ + PPPPP+   V    P PPS    P G  + N Y Y+++  AS++      S  T
Sbjct: 840 DYFQSTPPPPPLASDVKGSPPSPPSPKGQPRGQQDPNPYPYFYFYTASNATSLFSSSFLT 899

Query: 185 ALFWGLFLFHLML 187
           +LF+ L+LF L L
Sbjct: 900 SLFYFLYLFSLTL 904

[Close]
BLAST of CSPI06G19260 vs. TrEMBL
Match: A0A061GKL0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037325 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.9e-11
Identity = 76/185 (41.08%), Postives = 93/185 (50.27%), Query Frame = 1 

Query: 16  LLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPP-------PPPPPIVLKSP 75
           + ++ L R   ED       P   LLCIS+C+TCP IC+PPP       PPP P V  SP
Sbjct: 1   MCMIMLTRVTSEDEMGA---PSAGLLCISDCATCPVICSPPPPPLLKSFPPPSPSVHHSP 60

Query: 76  PPVPHVPPLAYFP----LNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAFRYYF 135
           PPVP+     YFP     +SPPP    SPP P   P PPP   ++ SS   PPP F+Y++
Sbjct: 61  PPVPYY----YFPPQSEYHSPPPSEPVSPPSP---PRPPPPAPSSYSSKGSPPPPFKYFY 120

Query: 136 NLPP---PPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLFL 187
           N PP   PP VL           GPH         YYFYA  +SS P     +L   L L
Sbjct: 121 NAPPGQGPPTVL-----------GPHEYPYP---YYYFYASKASSLPFQASLSLVM-LVL 160

[Close]
BLAST of CSPI06G19260 vs. TrEMBL
Match: A0A0D3B0Q7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-10
Identity = 73/187 (39.04%), Postives = 98/187 (52.41%), Query Frame = 1 

Query: 13  ILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPP--------PPPPPIV 72
           I+I L++ + +        ++++ P   LCISECSTCPTIC+PPP        PPP P +
Sbjct: 4   IIITLMVMIIQVASTSSDQIDILTP---LCISECSTCPTICSPPPSKPSPSTSPPPSPSL 63

Query: 73  LKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPP-PPPATATAVSSHSPPPPAFRYY 132
             S PP+P  PP    PL+SPPP P   PPP   SPP PPP   T +    PPPP F Y+
Sbjct: 64  PSSSPPLP-PPPSPSLPLSSPPPTP---PPPHKRSPPSPPPPLITVI---QPPPPRFYYF 123

Query: 133 FNLPPPPPVLI----PVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGL 187
            + PPPPP+        P  PS    P G      Y Y+++  A S+A   L ++    L
Sbjct: 124 ESTPPPPPLSSDGKGSPPSSPSPPPSPKGQQPPYPYPYFYFYTA-SNATSLLSSSFLISL 179

[Close]
BLAST of CSPI06G19260 vs. TAIR10
Match: AT5G11990.1 (AT5G11990.1 proline-rich family protein)

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-08
Identity = 72/185 (38.92%), Postives = 91/185 (49.19%), Query Frame = 1 

Query: 13  ILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPPPPIVLKSPPPVP 72
           I+ L+++ +  + P D     V+ P   LCISECSTCPTIC+PPP  P P +  SPPP P
Sbjct: 7   IIALVMVMVVASSPSDQ--TNVLTP---LCISECSTCPTICSPPPSKPSPSM--SPPPSP 66

Query: 73  HVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAFRYYFNLPPPPPV 132
            +P       + PPP P    PPP      PP   T +    PPPP F YYF   PPPP 
Sbjct: 67  SLP----LSSSPPPPPPHKHSPPPLSQSLSPPPLITVI---HPPPPRF-YYFESTPPPPP 126

Query: 133 LIP-----VPVPPSATAGPHGNTNSN---AYNY-YFYAPASSSAPPSLPTALFWGLFLFH 189
           L P      P  PS+   P G +       Y + YFY   +S+A     T LF   FL  
Sbjct: 127 LSPDGKGSPPSVPSSPPSPKGQSQGQQQPPYPFPYFYFYTASNA-----TLLFSSSFLIA 171

[Close]
BLAST of CSPI06G19260 vs. TAIR10
Match: AT4G13340.1 (AT4G13340.1 Leucine-rich repeat (LRR) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.0e-06
Identity = 54/127 (42.52%), Postives = 63/127 (49.61%), Query Frame = 1 

Query: 55  PPPPPPPPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHS 114
           PPPPPPPP  + SPPP P  PP    P+ SPPP     PPPP  SPPPPP        +S
Sbjct: 453 PPPPPPPPPPVYSPPPPPPPPPPPP-PVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYS 512

Query: 115 PPPPAFRYYFNLPPPPPVLIPVPV------PPSATAGPHGNTNSNAYNYYFYA---PASS 173
           PPPP     ++ PPPPP   P PV      PP   + P    +      Y+Y+   P  S
Sbjct: 513 PPPPP---VYSSPPPPPSPAPTPVYCTRPPPPPPHSPPPPQFSPPPPEPYYYSSPPPPHS 572

[Close]
BLAST of CSPI06G19260 vs. NCBI nr
Match: gi|778715318|ref|XP_011657382.1| (PREDICTED: extensin-like [Cucumis sativus])

HSP 1 Score: 365.2 bits (936), Expect = 7.1e-98
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

Query: 1   MEHFSKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPP 60
           MEHFSKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPP
Sbjct: 1   MEHFSKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPP 60

Query: 61  PPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAF 120
           PPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAF
Sbjct: 61  PPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAF 120

Query: 121 RYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLF 180
           RYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLF
Sbjct: 121 RYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLF 180

Query: 181 LFHLMLCSW 190
           LFHLMLCSW
Sbjct: 181 LFHLMLCSW 189

[Close]
BLAST of CSPI06G19260 vs. NCBI nr
Match: gi|659089438|ref|XP_008445508.1| (PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 1.5e-79
Identity = 165/176 (93.75%), Postives = 166/176 (94.32%), Query Frame = 1 

Query: 1   MEHFSKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPP 60
           MEHFSKTLHFSSILILLIL LA A PEDGRVV+VVPPVSLLCISECSTCPTICA  PPPP
Sbjct: 1   MEHFSKTLHFSSILILLILPLAGAAPEDGRVVQVVPPVSLLCISECSTCPTICA--PPPP 60

Query: 61  PPIVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPWPSPPPPPATATAVSSHSPPPPAF 120
           PP VLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPP PSPPPPPATATAVSSHSPPPPAF
Sbjct: 61  PPTVLKSPPPVPHVPPLAYFPLNSPPPRPTSSPPPPSPSPPPPPATATAVSSHSPPPPAF 120

Query: 121 RYYFNLPPPPPVLIPVPVPPSATAGPHGNTNSNAYNYYFYAPASSSAPPSLPTALF 177
           RYYFNLPPPPPVLIPVPVPPSATA P GNTNSNAYNYYFYAPASSSAPPSLPTA F
Sbjct: 121 RYYFNLPPPPPVLIPVPVPPSATAAPRGNTNSNAYNYYFYAPASSSAPPSLPTAFF 174

[Close]
BLAST of CSPI06G19260 vs. NCBI nr
Match: gi|674942430|emb|CDX91180.1| (BnaC02g04170D [Brassica napus])

HSP 1 Score: 80.1 bits (196), Expect = 4.6e-12
Identity = 74/193 (38.34%), Postives = 103/193 (53.37%), Query Frame = 1 

Query: 5   SKTLHFSSILILLILRLARAVPEDGRVVEVVPPVSLLCISECSTCPTICAPPPPPPPPIV 64
           SK +    I++++++ +  A     +   + P    LCISECSTCPTIC+PPP  P P  
Sbjct: 720 SKIIKMGLIIMVMVMGILVASSPSHQTDVLTP----LCISECSTCPTICSPPPSKPSPST 779

Query: 65  LKSPPPVPHVPPLAYFPLNSPPPRPT----SSPPPPWPSPPPPPATATAVSSHSPPPPAF 124
             SPPP P +P  +  PL  PPP P+    S PPPP    PP  +    ++   PPPP F
Sbjct: 780 --SPPPSPSLPSSS--PLPQPPPSPSLPSSSPPPPPRKHSPPAVSPPPLITVIQPPPPRF 839

Query: 125 RYYFNLPPPPPVLIPV----PVPPSATAGPHGNTNSNAYNYYFYAPASSSA---PPSLPT 184
            Y+ + PPPPP+   V    P PPS    P G  + N Y Y+++  AS++      S  T
Sbjct: 840 DYFQSTPPPPPLASDVKGSPPSPPSPKGQPRGQQDPNPYPYFYFYTASNATSLFSSSFLT 899

Query: 185 ALFWGLFLFHLML 187
           +LF+ L+LF L L
Sbjct: 900 SLFYFLYLFSLTL 904

[Close]
BLAST of CSPI06G19260 vs. NCBI nr
Match: gi|694412910|ref|XP_009334748.1| (PREDICTED: leucine-rich repeat extensin-like protein 1 [Pyrus x bretschneideri])

HSP 1 Score: 79.3 bits (194), Expect = 7.8e-12
Identity = 71/160 (44.38%), Postives = 87/160 (54.37%), Query Frame = 1 

Query: 34  VVPPVSLLCISECSTCPTICAPPPPP------PPPIVLKSPPPVPHVPPLAYFPLNSPPP 93
           V P   L+CIS+C+TCP IC+PPPPP      PPP  L+SPPP  H PP  Y+   SPPP
Sbjct: 39  VDPETGLICISDCTTCPVICSPPPPPQLEPSGPPPSPLQSPPPAHHSPPQYYY--ISPPP 98

Query: 94  RPTSSPPPPWPSPPP--PPATATAVSSHSPPPPAFRYYFNLPPPPPVLIPVPVPPSATAG 153
            P   PP P PSPP   PP+        +PPPP FRY++ +PP        PVP + T G
Sbjct: 99  SPPKQPPLPPPSPPKQCPPSYPL---KGAPPPPRFRYFYGMPPAG------PVPTTETTG 158

Query: 154 PHGNTNSNAYNYYFYAPASSSAPPSLPTALFWGLFLFHLM 186
                NS+   YYFYA  +SS  PS     F  + L  L+
Sbjct: 159 GGVANNSSHPYYYFYASKASS--PSSVHVFFLFILLVQLV 185

[Close]
BLAST of CSPI06G19260 vs. NCBI nr
Match: gi|922426245|ref|XP_013619193.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Brassica oleracea var. oleracea])

HSP 1 Score: 79.3 bits (194), Expect = 7.8e-12
Identity = 69/157 (43.95%), Postives = 88/157 (56.05%), Query Frame = 1 

Query: 41  LCISECSTCPTICAPPPPPPPPIVLKSPPPVPHVPPLAYFPLNSPPPRPT----SSPPPP 100
           LCISECSTCPTIC+PPP  P P    SPPP P +P  +  PL  PPP P+    S PPPP
Sbjct: 28  LCISECSTCPTICSPPPSKPSPST--SPPPSPSLPSSS--PLPQPPPSPSLPSSSPPPPP 87

Query: 101 WPSPPPPPATATAVSSHSPPPPAFRYYFNLPPPPPVLIPV----PVPPSATAGPHGNTNS 160
               PP  +    ++   PPPP F Y+ + PPPPP+   V    P PPS    P G  + 
Sbjct: 88  RKHSPPAVSPPPLITVIQPPPPRFDYFQSTPPPPPLASDVKGSPPSPPSPKGQPRGQQDP 147

Query: 161 NAYNYYFYAPASSSA---PPSLPTALFWGLFLFHLML 187
           N Y Y+++  AS++      S  T+LF+ L+LF L L
Sbjct: 148 NPYPYFYFYTASNATSLFSSSFLTSLFYFLYLFSLTL 180

The following BLAST results are available for this feature:
BLAST of CSPI06G19260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G19260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD44_CUCSA5.0e-98100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G363610 PE=4 SV=1[more]
A0A0D3AIP4_BRAOL3.2e-1238.34Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078DPE5_BRANA3.2e-1238.34BnaC02g04170D protein OS=Brassica napus GN=BnaC02g04170D PE=4 SV=1[more]
A0A061GKL0_THECC7.9e-1141.08Uncharacterized protein OS=Theobroma cacao GN=TCM_037325 PE=4 SV=1[more]
A0A0D3B0Q7_BRAOL8.7e-1039.04Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
BLAST of CSPI06G19260 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11990.15.6e-0838.92 proline-rich family protein[more]
AT4G13340.14.0e-0642.52 Leucine-rich repeat (LRR) family protein[more]
BLAST of CSPI06G19260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778715318|ref|XP_011657382.1|7.1e-98100.00PREDICTED: extensin-like [Cucumis sativus][more]
gi|659089438|ref|XP_008445508.1|1.5e-7993.75PREDICTED: classical arabinogalactan protein 9-like [Cucumis melo][more]
gi|674942430|emb|CDX91180.1|4.6e-1238.34BnaC02g04170D [Brassica napus][more]
gi|694412910|ref|XP_009334748.1|7.8e-1244.38PREDICTED: leucine-rich repeat extensin-like protein 1 [Pyrus x bretschneideri][more]
gi|922426245|ref|XP_013619193.1|7.8e-1243.95PREDICTED: leucine-rich repeat extensin-like protein 3 [Brassica oleracea var. o... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G19260.1CSPI06G19260.1mRNA