Carg23141 (gene) Silver-seed gourd

NameCarg23141
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSodium channel protein type 10 subunit alpha like
LocationCucurbita_argyrosperma_scaffold_194 : 114611 .. 116788 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCGCCCTCTCTCTCTACTTCGAACGCTCTCTACCATCCTTCACGGGCCGTTACCGCCCCCGCAATCGCCATTCCTCTCTTCTCAAGCTTCCATGCTCCTCCGGAAATTTCCTTCTCTCCGCTTCATCATCGCCGTTCATCTCTCTTGCTCTCTTCTAATCCCTGTGCTAAATCCGCCGTTTGTACAGCAGCAGTACGCCCGCCTCCGGACTCCGATCCGCCTCCTGACGAGGATCCGATTCGTCTAAAAGGTTACTATTCTTTGCTGGTGTTTTTCGTGCTTAATTCATTTATTGGACTGAACTGCTCGTGTTAAGGCTTAGAAATTTTAGTGCATAGAGCTTGGTTATGTGTTTACTTATTTCTATTTCGTTTTTCCATGAACGGTTGTGGAGTTTGCGTTATCCTTATCCCTATAGCATGCCTTCATAACCGAAAATAAAAATTATTAGCTCCTGAATTTTGCTCGGATTGTGCTATACTGCTAGTGGTCCTTATTTCTCGATTGCTACAACTAATAACAGTGTTTTTTATCCATTTGAGTTCTGGTTGTTTAGAAGCTAATCATCCATAAATATTTTTCGTTTTTTTAGTCATCTGGAAATTTGTTCCGCTAGGTCCGCGGATACATATGTGCTTAGCAATTATATCTAATTTTCTCGTGATTTATTTTGAAAGTTTGTTAGATAGAAAGTTCTGCTCAATACGTCATAGATATGTCGAAATCTCAACGGAAAAGAAATAATGGTGTTTGGAGTGTGCGATTCATTAGGTTCAACTACTCCGTAATCATTTTTCATTAACCGCGTCAGCGAAGTTCAATTGTCAATTTTAATGAGCAATTCGTAAACATATCTGAGTATAGATGTTTACCTGCAAATATAAAGCCATTTCCCCCTCCATAACAACAGTTATATATATTTGCTTTCGTGCAAGAATCATAGCGATTTCTTAGGATTCAACTTTCCGATTGTTAGATGAAGTGTCTTCTTCTTTTCTAGCCCCTTATCGTATAGCTGCTTGGCTTGGATAACTTAGGCCTTTGATAATCATTTGGCTTCCGGAAATTGTGTTTGATTTCTTATTAATTCTCTACTATGAGTTTCATCTTTCTTAACCAAACACTTAAAGTTTTAGCCAAATTCCAAAAACAGTAGCATGTTTTAATTTTTTTTTTTTTTAAGTTTTCAAAACTTGACTGGTTTTTTAAAGCATAGATAACAAAATAAAGGAATTCATAGGCCAAAGTAATATTTATAGACTTAAATTTCAAAAATCAAACTGTTATCAAACAAGATTTTAATTTTTCTTTCAATTCATTTTTTGACACTCCCTTGGCCAAATATTAATTTTGGTTCATGATGCCTAACATGTGATCATTTAGTATGAAATAGGATGAATTGGAAAGGATATTCCGGTGATTTGAGACGTATCTAGGTTTTCTACCTTAAATTAGCTCTTTCCAAACTTCTTTTTTGTAACTATAGCTTCTTGATTATAGCCAATTGGAGTGCTTTTCTGCAGTTTTCTTGCATTCTGGGAGATTGTTAAGCTTCATCGTCTGTATTAGATTAAAACTGTTGGTGTTGGTAATACTCTGAAATTCTACCGAGTCATTATATATTTTTGATGTTAGAACTTAGTACTAATTTTCTTGCATGTAATTCATATTGTAACTTGTTTGGTTTGAATTGCTTTGATCATGCTGAGGTTCTTTGATGTGGATGAACTATGTTTCCTTATTTCTCTTCGTATTATAATTTGAGCAGGTTTTCCAGCAATTTTCTCAAAATTTGGAGACAGAGTACAGATTTTCTTTGCTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGACCTAATAAGGGCTCTCGATTTAGACGATAGTTTCGTAAAAAAAGCATTCTTTTGTAAAGGATTGCAGGTTAATATAAATAGTGTTAAGCTGCTTGATTTTAACTATGTTCAAGATATATAGAAGCCTTAGACGAGGTAGATAAAGCTTGCTCAATTAGATGTTGATACCAAAAGTAAACTGTCATGGAAAGCCCTATTCTGTATCATATTCTTATCAAGTGTCTTAAAAATTTCCTGAATCCTTCTCTAATTATTAACCTTTTTTTCTTTTTTGAACCTTTTCTTGATTTGTGC

mRNA sequence

ATGGCAGCGCCCTCTCTCTCTACTTCGAACGCTCTCTACCATCCTTCACGGGCCGTTACCGCCCCCGCAATCGCCATTCCTCTCTTCTCAAGCTTCCATGCTCCTCCGGAAATTTCCTTCTCTCCGCTTCATCATCGCCGTTCATCTCTCTTGCTCTCTTCTAATCCCTGTGCTAAATCCGCCGTTTGTACAGCAGCAGTACGCCCGCCTCCGGACTCCGATCCGCCTCCTGACGAGGATCCGATTCGTCTAAAAGGTTTTCCAGCAATTTTCTCAAAATTTGGAGACAGAGTACAGATTTTCTTTGCTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGACCTAATAAGGGCTCTCGATTTAGACGATAGTTTCGTAAAAAAAGCATTCTTTTGTAAAGGATTGCAGGTTAATATAAATAGTGTTAAGCTGCTTGATTTTAACTATGTTCAAGATATATAGAAGCCTTAGACGAGGTAGATAAAGCTTGCTCAATTAGATGTTGATACCAAAAGTAAACTGTCATGGAAAGCCCTATTCTGTATCATATTCTTATCAAGTGTCTTAAAAATTTCCTGAATCCTTCTCTAATTATTAACCTTTTTTTCTTTTTTGAACCTTTTCTTGATTTGTGC

Coding sequence (CDS)

ATGGCAGCGCCCTCTCTCTCTACTTCGAACGCTCTCTACCATCCTTCACGGGCCGTTACCGCCCCCGCAATCGCCATTCCTCTCTTCTCAAGCTTCCATGCTCCTCCGGAAATTTCCTTCTCTCCGCTTCATCATCGCCGTTCATCTCTCTTGCTCTCTTCTAATCCCTGTGCTAAATCCGCCGTTTGTACAGCAGCAGTACGCCCGCCTCCGGACTCCGATCCGCCTCCTGACGAGGATCCGATTCGTCTAAAAGGTTTTCCAGCAATTTTCTCAAAATTTGGAGACAGAGTACAGATTTTCTTTGCTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGACCTAATAAGGGCTCTCGATTTAGACGATAG

Protein sequence

MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPCAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
BLAST of Carg23141 vs. NCBI nr
Match: XP_022959617.1 (uncharacterized protein LOC111460643 isoform X1 [Cucurbita moschata])

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHXXXXXXXXXXXXXXXX 60
           MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHXXXXXXXXXXXXXXXX
Sbjct: 1   MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK 120
           XXXXXXXXXXXXXXXXXXXXPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK 120

Query: 121 NRPNKGSRFRR 132
           NRPNKGSRFRR
Sbjct: 121 NRPNKGSRFRR 131

BLAST of Carg23141 vs. NCBI nr
Match: XP_023513765.1 (uncharacterized protein LOC111778275 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-39
Identity = 113/131 (86.26%), Postives = 114/131 (87.02%), Query Frame = 0

Query: 1   MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHXXXXXXXXXXXXXXXX 60
           MA+PSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLH               X
Sbjct: 1   MASPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHHRRSSLLLSSNPCAKX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK 120
           XXXXXXXXXXXXXXXXXXXX IRLKGF AIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXIRLKGFTAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK 120

Query: 121 NRPNKGSRFRR 132
           NRPNKGSRFRR
Sbjct: 121 NRPNKGSRFRR 131

BLAST of Carg23141 vs. NCBI nr
Match: XP_023004358.1 (uncharacterized protein LOC111497700 isoform X1 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 2.7e-39
Identity = 99/131 (75.57%), Postives = 100/131 (76.34%), Query Frame = 0

Query: 1   MAAPSLSTSNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHXXXXXXXXXXXXXXXX 60
           MA+PSLSTSNALYHPSRAVTAPAIAIPLFSSFHA PEISFSPLH                
Sbjct: 1   MASPSLSTSNALYHPSRAVTAPAIAIPLFSSFHARPEISFSPLHHRRSSLLLSFNPCAKS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK 120
                        XXXXXXX IRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK
Sbjct: 61  AVCTAAVRPPPDSXXXXXXXXIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK 120

Query: 121 NRPNKGSRFRR 132
           NRPNKGSRFRR
Sbjct: 121 NRPNKGSRFRR 131

BLAST of Carg23141 vs. NCBI nr
Match: XP_022145821.1 (uncharacterized protein LOC111015178 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 96/119 (80.67%), Postives = 100/119 (84.03%), Query Frame = 0

Query: 13  YHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXX 72
           YH + ++TA  IA+PL S F  PPEI F    XXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 5   YHSTHSLTASTIAVPLCSRFRVPPEICFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 64

Query: 73  XXXXXXXXPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR 132
           XXXXXX  PIR KGFPA FSKF DRVQIFFAVLFWMSLFFWTS LDGKNRPNKGSRFRR
Sbjct: 65  XXXXXXKDPIRAKGFPAFFSKFQDRVQIFFAVLFWMSLFFWTSVLDGKNRPNKGSRFRR 123

BLAST of Carg23141 vs. NCBI nr
Match: XP_008461116.1 (PREDICTED: uncharacterized protein LOC103499798 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.9e-21
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 0

Query: 9   SNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHXXXXXXXXXXXXXXXXXXXXXXXX 68
           S +L+  S +V A +IA+PL S+FH   +I FSP  XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 3   STSLHRSSHSVAASSIALPLCSTFHFRSKICFSPPRXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 69  XXXXXXXXXXXXPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGSR 128
           XXXXXXXXXXXXP+RL G PAIFSKF DRVQIF AVLFWMSLFFWTSALDGKNRPNKGSR
Sbjct: 63  XXXXXXXXXXXXPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKNRPNKGSR 122

Query: 129 FRR 132
           FRR
Sbjct: 123 FRR 125

BLAST of Carg23141 vs. TAIR10
Match: AT1G52550.1 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 6.1e-06
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 0

Query: 90  IFSKFGDRVQIFFAVLFWMSLFFWTSALDGK-----NRPNKGSRFR 131
           + S   DRV+IF +VL W+SLFFW SAL G+      +  KGSRF+
Sbjct: 86  VASMIQDRVKIFLSVLIWISLFFWASALQGRGSKGNGKGKKGSRFK 131

BLAST of Carg23141 vs. TrEMBL
Match: tr|A0A1S3CE06|A0A1S3CE06_CUCME (uncharacterized protein LOC103499798 OS=Cucumis melo OX=3656 GN=LOC103499798 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-21
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 0

Query: 9   SNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHXXXXXXXXXXXXXXXXXXXXXXXX 68
           S +L+  S +V A +IA+PL S+FH   +I FSP  XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 3   STSLHRSSHSVAASSIALPLCSTFHFRSKICFSPPRXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 69  XXXXXXXXXXXXPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGSR 128
           XXXXXXXXXXXXP+RL G PAIFSKF DRVQIF AVLFWMSLFFWTSALDGKNRPNKGSR
Sbjct: 63  XXXXXXXXXXXXPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKNRPNKGSR 122

Query: 129 FRR 132
           FRR
Sbjct: 123 FRR 125

BLAST of Carg23141 vs. TrEMBL
Match: tr|A0A0A0K8T0|A0A0A0K8T0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432560 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.2e-21
Identity = 81/123 (65.85%), Postives = 90/123 (73.17%), Query Frame = 0

Query: 9   SNALYHPSRAVTAPAIAIPLFSSFHAPPEISFSPLHXXXXXXXXXXXXXXXXXXXXXXXX 68
           S +L+  S++V A +IA+PL S+FH   EI FS                   XXXXXXXX
Sbjct: 5   STSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESXXXXXXXX 64

Query: 69  XXXXXXXXXXXXPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGSR 128
           XXXXXXXXXXXXP+RL G PAIFSKF DRVQIF AVLFWMSLFFWTSALDG+NRPNKGSR
Sbjct: 65  XXXXXXXXXXXXPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPNKGSR 124

Query: 129 FRR 132
           FRR
Sbjct: 125 FRR 127

BLAST of Carg23141 vs. TrEMBL
Match: tr|G7JGZ0|G7JGZ0_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11420506 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.3e-12
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 84  LKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR 132
           L+G  A  SKF DRVQIFFAVLFWM+LFFW SA DG+NRPNKGS+FR+
Sbjct: 77  LQGVVASLSKFQDRVQIFFAVLFWMTLFFWASAWDGRNRPNKGSKFRK 124

BLAST of Carg23141 vs. TrEMBL
Match: tr|A0A1S2YM95|A0A1S2YM95_CICAR (uncharacterized protein LOC101493454 OS=Cicer arietinum OX=3827 GN=LOC101493454 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.1e-12
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 83  RLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR 132
           +L+   +  SKF DRVQIFFAVLFWMSLFFW SA DG+NRPNKGSRFR+
Sbjct: 71  QLQDVASSLSKFQDRVQIFFAVLFWMSLFFWASAWDGRNRPNKGSRFRK 119

BLAST of Carg23141 vs. TrEMBL
Match: tr|B9RV61|B9RV61_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0899870 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0

Query: 85  KGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKN----RPNKGSRFRR 132
           KG  A F++F DRVQIFFAVLFWMSLFFW SA DG+N    RPNKGSRFRR
Sbjct: 73  KGIAATFTRFQDRVQIFFAVLFWMSLFFWASAWDGRNRGGSRPNKGSRFRR 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022959617.11.3e-41100.00uncharacterized protein LOC111460643 isoform X1 [Cucurbita moschata][more]
XP_023513765.12.0e-3986.26uncharacterized protein LOC111778275 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023004358.12.7e-3975.57uncharacterized protein LOC111497700 isoform X1 [Cucurbita maxima][more]
XP_022145821.11.3e-2280.67uncharacterized protein LOC111015178 [Momordica charantia][more]
XP_008461116.11.9e-2179.67PREDICTED: uncharacterized protein LOC103499798 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT1G52550.16.1e-0650.00unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CE06|A0A1S3CE06_CUCME1.3e-2179.67uncharacterized protein LOC103499798 OS=Cucumis melo OX=3656 GN=LOC103499798 PE=... [more]
tr|A0A0A0K8T0|A0A0A0K8T0_CUCSA8.2e-2165.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432560 PE=4 SV=1[more]
tr|G7JGZ0|G7JGZ0_MEDTR5.3e-1275.00Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11420506 PE=4 ... [more]
tr|A0A1S2YM95|A0A1S2YM95_CICAR9.1e-1273.47uncharacterized protein LOC101493454 OS=Cicer arietinum OX=3827 GN=LOC101493454 ... [more]
tr|B9RV61|B9RV61_RICCO1.2e-1174.51Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0899870 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23141-RACarg23141-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37706FAMILY NOT NAMEDcoord: 11..131