Cucsa.105400 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.105400
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Usher syndrome type-1C-binding protein 1
Location	scaffold00929 : 104843 .. 107043 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATACTTTCGACCTCTCTCCACCGTTCTTCACAGTCCGTTGCCGCCTCTTCAATCGCCCTTCCTCTCTGTTCAACCTTTCATCTTCGGTCGGAAATCTGCTTCTCTTTGCACCGTCGCCGCCTGTCACCTCTCTTCTTCTCCTCCAATTCTTATGCCGAATCCGTCGTTTGCAGCGCAGCAGTACGGCCACCACCGGATTCCGATCCGCCTCCCGAGGAGGATCCCGTTCGTTTAACAGGTTACTATTCTTTGCTGATGATGTCTCCATTTAGTTCACTTTATTGACTGAATTGTTCgTGATGAGGCCTAAAAAATTTAGTGCGTAGAGCTTGGTTTTTTCTTTttCGTTTTTGTACCATATGCGGAGAAGCCTACGTTATCTTTATTTGTATGGAATTGCTTTGATAATAGAAAATGAAAATTATTAGCTCCTGAATTTTGCTTGGCGTCTGCTAGTGGTGGTTCGCTGCTACAATTAGTAACAGaTTTtATTTATATTtGAATTCCTGGTTGTTTAGAcGCTAATCATCCACAAATAATATTGTTCGTGTTTTTGGTCATCCGGAAATTTACTATGTCTTCGGATGCATATGGGCTTTAGCCATAGTATTAACTTCTTATGGGTTATTTTGGAAGTTTGTTAAGTAGGAAATTTTGCTCAACACGTTTTAGATACGTAAAAGTCATACCACAAATATTCATTTTGGTTCATGATGCTTAACATATGGGTTCTTAATATGAAATAGGATGGAAATGACTTTGTGGTGATTATCTAGGTCTTCTACCTTGCATTGcTGCTCTTTCTAAACTTTTTTTCTGTGAATATATTTCCTTGAATAACCAATTTAAGTGTTTTCTGTAATTTTCTTGCAATTCTCGGAAATTGCTTATCTTCATATTTTCTACTAATCTCTTAATAATGAATCTGTGCTTTTCTTTAATAAAAAGGAATGGAGAGACCGAGAAAGTGAAGAGTTTTTCATTAGTTGTCATGTTTTTAGAGAGAAAGAATCATTTTGGAGTGAATATGTGATAAAGTAGATGAGGTGATTATTGAcTGTCGGTTTAATAGAGGAGAATCACTTTCTTACTTAATAAAAACAGAGAGACAGAAAGTGAAAGTTACAGTGTGTCATTTCTTTTAGAGAGAATCATTACAGGGTGAACATATTGATCAAAGTAGATAAAGTGGTTGTTGACCATGGGTTTAATAGAAAGGAGTCATTCTTTCTCATGTAATAAAAACGGAGAGACAGAGTAATTAAAGTGAGAGCCTTTTGTAAGTTATCATATTTTAAAAGAGAATCACTTTAGAGTGAACATGTTGTACAAAATAGATAAGGTGATTGATGACTGTTGGTTTAATATAAATGAATCGTTTCTTTCTCATACCATGAAAACGGAGAGACAAAGTAAAAGTCTTCCATAAGTTGTCATTTTCTTTAGACAGATTCATTTTAGGGTTATGTCGATCAAACTTCATGGTAGATAAGATGATTGTAGACCGTTTGTTTAGTAAAGAAATAATAGTTTCTTTCTTATTTAATTTAATAAAAATGGAGAGATAAGGAAACTGACGGGAATGCCTTTCATAAGTTGTCAATTTTTTAGAGAGAATCATTTTAGGGTATGATGTTCATCGGAATATACAAGAAGATTATTAAACGGAAACAGTTGGTAAAACTAAGGAATTCTACCAAGTTATTATATACTTTTAATTATTGAAATCAATACTATTTTTCCTGCTTGATAGTTCTTGTTCTAATATCGTTACTTGAGCAGGTTTACCGGCAATTTTTTCAAAATTTCGGGACAGAGTACAAATTTTCCTTGCTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTAGATGGGAGAAACAGACCTAATAAGGGCTCTCGATTTAGACGATAGTTTCGTAGACAAGCATTCTTTTGTAAAGGATTGTAGGTTTAGTATAAATAGTGGTAGACTACTTGATTATACTTGAGATATATTTCAGCCTTTGACGAGGTAGGTAAAGCTTGCTCCACAGTGTTGATATTGATACCCTCCGCTGTATATTGTGTAGCCGCAAAtGAGATAAGGAATGGGTATGAAACAAATTAAAGCAAAACTGTCATGGAAAGTCGTATTTTGTATTGTATTATATTCTTATCAAGTGTCTTGTATATTTCTTGAACCCCc

mRNA sequence

ATGGCAATACTTTCGACCTCTCTCCACCGTTCTTCACAGTCCGTTGCCGCCTCTTCAATCGCCCTTCCTCTCTGTTCAACCTTTCATCTTCGGTCGGAAATCTGCTTCTCTTTGCACCGTCGCCGCCTGTCACCTCTCTTCTTCTCCTCCAATTCTTATGCCGAATCCGTCGTTTGCAGCGCAGCAGTACGGCCACCACCGGATTCCGATCCGCCTCCCGAGGAGGATCCCGTTCGTTTAACAGGTTTACCGGCAATTTTTTCAAAATTTCGGGACAGAGTACAAATTTTCCTTGCTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTAGATGGGAGAAACAGACCTAATAAGGGCTCTCGATTTAGACGATAGTTTCGTAGACAAGCATTCTTTTGTAAAGGATTGTAGGTTTAGTATAAATAGTGGTAGACTACTTGATTATACTTGAGATATATTTCAGCCTTTGACGAGGTAGGTAAAGCTTGCTCCACAGTGTTGATATTGATACCCTCCGCTGTATATTGTGTAGCCGCAAATGAGATAAGGAATGGGTATGAAACAAATTAAAGCAAAACTGTCATGGAAAGTCGTATTTTGTATTGTATTATATTCTTATCAAGTGTCTTGTATATTTCTTGAACCCCC

Coding sequence (CDS)

ATGGCAATACTTTCGACCTCTCTCCACCGTTCTTCACAGTCCGTTGCCGCCTCTTCAATCGCCCTTCCTCTCTGTTCAACCTTTCATCTTCGGTCGGAAATCTGCTTCTCTTTGCACCGTCGCCGCCTGTCACCTCTCTTCTTCTCCTCCAATTCTTATGCCGAATCCGTCGTTTGCAGCGCAGCAGTACGGCCACCACCGGATTCCGATCCGCCTCCCGAGGAGGATCCCGTTCGTTTAACAGGTTTACCGGCAATTTTTTCAAAATTTCGGGACAGAGTACAAATTTTCCTTGCTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTAGATGGGAGAAACAGACCTAATAAGGGCTCTCGATTTAGACGATAG

Protein sequence

MAILSTSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCSAAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPNKGSRFRR*

Homology

[Close]

BLAST of Cucsa.105400 vs. TrEMBL
Match: A0A0A0K8T0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432560 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.5e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MAILSTSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCS 60
           MAILSTSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCS
Sbjct: 1   MAILSTSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCS 60

Query: 61  AAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPN 120
           AAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPN
Sbjct: 61  AAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPN 120

Query: 121 KGSRFRR 128
           KGSRFRR
Sbjct: 121 KGSRFRR 127

[Close]

BLAST of Cucsa.105400 vs. TrEMBL
Match: D7U123_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06800 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.3e-20
Identity = 55/99 (55.56%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 37  SLHRRRLSPLFFSSNSYAESVVC------SAAVRPPPDSDPPPEEDPVRLTGLPAIFSKF 96
           S HR   SP+ F   S             + +  PPP+SDPPP+ DPV LTGL A FS+F
Sbjct: 39  SCHRSSPSPIRFHPPSLPPRTASLRRRASTPSPPPPPESDPPPQNDPVPLTGLVATFSRF 98

Query: 97  RDRVQIFLAVLFWMSLFFWTSALDGRN--RPNKGSRFRR 128
           +D +QIF AVLFW+SLFFW SA DGRN  RPNKGSR RR
Sbjct: 99  QDSIQIFFAVLFWLSLFFWASAWDGRNGGRPNKGSRLRR 137

[Close]

BLAST of Cucsa.105400 vs. TrEMBL
Match: A0A067KLQ9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06143 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 51  NSYAESVVCSAAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWT 110
           N+   S+  + + +PP   DPPPE+DPVR  G+ A FS+F+DRVQIFLAVLFWMSLFFW 
Sbjct: 55  NARLRSLYSALSPQPPTQPDPPPEKDPVRPKGIAATFSRFQDRVQIFLAVLFWMSLFFWA 114

Query: 111 SALDGRN----RPNKGSRFRR 128
           SA  GRN    RPNKGSRFRR
Sbjct: 115 SASGGRNGDSGRPNKGSRFRR 135

[Close]

BLAST of Cucsa.105400 vs. TrEMBL
Match: G7JGZ0_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g010270 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.5e-18
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 41  RRLSPLFFSSNSYAESVVCSAAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAV 100
           R   PL  SS S       +A+  PPP   PPPE +   L G+ A  SKF+DRVQIF AV
Sbjct: 41  RSFQPLSSSSTSLRRLRCRAASPNPPP---PPPENESTELQGVVASLSKFQDRVQIFFAV 100

Query: 101 LFWMSLFFWTSALDGRNRPNKGSRFRR 128
           LFWM+LFFW SA DGRNRPNKGS+FR+
Sbjct: 101 LFWMTLFFWASAWDGRNRPNKGSKFRK 124

[Close]

BLAST of Cucsa.105400 vs. TrEMBL
Match: V7AR16_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G155500g PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-17
Identity = 58/113 (51.33%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 17  ASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCSAAVRPPPDSDPPPEED 76
           ASS  L L +T +      F L +R+  PL FSS        C AA   PP   PP ++D
Sbjct: 14  ASSSELLLFTTLYPSHAFSFPL-QRQFQPLSFSSALLRRLPPCRAASPGPPL--PPSDKD 73

Query: 77  PVRLTG--LPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPNKGSRFRR 128
              L G  + A  SK +DR+QIF AVLFW+SLFFW SA DGRNRPNKGSRFRR
Sbjct: 74  SSHLKGTDVGASLSKIQDRIQIFFAVLFWLSLFFWASAWDGRNRPNKGSRFRR 123

[Close]

BLAST of Cucsa.105400 vs. TAIR10
Match: AT3G15780.1 (AT3G15780.1 unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.0e-14
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 36  FSLHRRRLSPLFFSSNSYAESVVCSAAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQ 95
           + LHRR  + +  +S      +  +     PP  DPPP ED  +L GL    ++ +DRV+
Sbjct: 27  YHLHRR--NTVLLASPRRLRRLAVAGGPPSPPGPDPPPPEDTTQLEGLVGAVTRVQDRVK 86

Query: 96  IFLAVLFWMSLFFWTSALD--GRNRPNKGSRFR 127
           IFLAV FWM LFFW +  D  G+ +  KGSRF+
Sbjct: 87  IFLAVFFWMFLFFWVTVTDGTGKGKGKKGSRFK 117

[Close]

BLAST of Cucsa.105400 vs. TAIR10
Match: AT1G52550.1 (AT1G52550.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-13
Identity = 48/126 (38.10%), Postives = 65/126 (51.59%), Query Frame = 1


Query: 12  SQSVAASSIALPLCSTFH-LRSEICFSLHRRRLSP---LFFSSNSYAESVVCSAAVRPP- 71
           + + ++S++ L  C   H L S   FS  R    P   LF          +  A + PP 
Sbjct: 6   ANTTSSSNLYLHRCRKNHPLPSPSFFSPFRSSPLPSQTLFLVPTPKPVRRIAVAPLGPPT 65

Query: 72  -PDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGR-----NRPN 127
            P  DPPP ++   LT L  + S  +DRV+IFL+VL W+SLFFW SAL GR      +  
Sbjct: 66  PPSPDPPPPKNTTELTSLVGVASMIQDRVKIFLSVLIWISLFFWASALQGRGSKGNGKGK 125

[Close]

BLAST of Cucsa.105400 vs. NCBI nr
Match: gi|449436158|ref|XP_004135861.1| (PREDICTED: uncharacterized protein LOC101209839 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-65
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MAILSTSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCS 60
           MAILSTSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCS
Sbjct: 1   MAILSTSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCS 60

Query: 61  AAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPN 120
           AAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPN
Sbjct: 61  AAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPN 120

Query: 121 KGSRFRR 128
           KGSRFRR
Sbjct: 121 KGSRFRR 127

[Close]

BLAST of Cucsa.105400 vs. NCBI nr
Match: gi|659122387|ref|XP_008461116.1| (PREDICTED: uncharacterized protein LOC103499798 [Cucumis melo])

HSP 1 Score: 236.9 bits (603), Expect = 2.0e-59
Identity = 116/123 (94.31%), Postives = 119/123 (96.75%), Query Frame = 1


Query: 5   STSLHRSSQSVAASSIALPLCSTFHLRSEICFSLHRRRLSPLFFSSNSYAESVVCSAAVR 64
           STSLHRSS SVAASSIALPLCSTFH RS+ICFS  RRRLSPLFFSSNSYA+SVVCSAAVR
Sbjct: 3   STSLHRSSHSVAASSIALPLCSTFHFRSKICFSPPRRRLSPLFFSSNSYAKSVVCSAAVR 62

Query: 65  PPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGRNRPNKGSR 124
           PPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDG+NRPNKGSR
Sbjct: 63  PPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWTSALDGKNRPNKGSR 122

Query: 125 FRR 128
           FRR
Sbjct: 123 FRR 125

[Close]

BLAST of Cucsa.105400 vs. NCBI nr
Match: gi|225442973|ref|XP_002267834.1| (PREDICTED: probable methyltransferase PMT11 [Vitis vinifera])

HSP 1 Score: 105.1 bits (261), Expect = 9.0e-20
Identity = 55/99 (55.56%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 37  SLHRRRLSPLFFSSNSYAESVVC------SAAVRPPPDSDPPPEEDPVRLTGLPAIFSKF 96
           S HR   SP+ F   S             + +  PPP+SDPPP+ DPV LTGL A FS+F
Sbjct: 39  SCHRSSPSPIRFHPPSLPPRTASLRRRASTPSPPPPPESDPPPQNDPVPLTGLVATFSRF 98

Query: 97  RDRVQIFLAVLFWMSLFFWTSALDGRN--RPNKGSRFRR 128
           +D +QIF AVLFW+SLFFW SA DGRN  RPNKGSR RR
Sbjct: 99  QDSIQIFFAVLFWLSLFFWASAWDGRNGGRPNKGSRLRR 137

[Close]

BLAST of Cucsa.105400 vs. NCBI nr
Match: gi|802603627|ref|XP_012073182.1| (PREDICTED: formin-like protein 14 [Jatropha curcas])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 51  NSYAESVVCSAAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAVLFWMSLFFWT 110
           N+   S+  + + +PP   DPPPE+DPVR  G+ A FS+F+DRVQIFLAVLFWMSLFFW 
Sbjct: 55  NARLRSLYSALSPQPPTQPDPPPEKDPVRPKGIAATFSRFQDRVQIFLAVLFWMSLFFWA 114

Query: 111 SALDGRN----RPNKGSRFRR 128
           SA  GRN    RPNKGSRFRR
Sbjct: 115 SASGGRNGDSGRPNKGSRFRR 135

[Close]

BLAST of Cucsa.105400 vs. NCBI nr
Match: gi|357468203|ref|XP_003604386.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 99.0 bits (245), Expect = 6.4e-18
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 1


Query: 41  RRLSPLFFSSNSYAESVVCSAAVRPPPDSDPPPEEDPVRLTGLPAIFSKFRDRVQIFLAV 100
           R   PL  SS S       +A+  PPP   PPPE +   L G+ A  SKF+DRVQIF AV
Sbjct: 41  RSFQPLSSSSTSLRRLRCRAASPNPPP---PPPENESTELQGVVASLSKFQDRVQIFFAV 100

Query: 101 LFWMSLFFWTSALDGRNRPNKGSRFRR 128
           LFWM+LFFW SA DGRNRPNKGS+FR+
Sbjct: 101 LFWMTLFFWASAWDGRNRPNKGSKFRK 124

The following BLAST results are available for this feature:

BLAST of Cucsa.105400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8T0_CUCSA	7.5e-66	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432560 PE=4 SV=1	[more]
D7U123_VITVI	6.3e-20	55.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06800 PE=4 SV=...	[more]
A0A067KLQ9_JATCU	1.1e-19	62.96	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06143 PE=4 SV=1	[more]
G7JGZ0_MEDTR	4.5e-18	57.47	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g010270 PE=4 SV=1	[more]
V7AR16_PHAVU	6.5e-17	51.33	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G155500g PE=4 SV=1	[more]

BLAST of Cucsa.105400 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15780.1	6.0e-14	40.86	unknown protein	[more]
AT1G52550.1	3.9e-13	38.10	unknown protein	[more]

BLAST of Cucsa.105400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436158\|ref\|XP_004135861.1\|	1.1e-65	100.00	PREDICTED: uncharacterized protein LOC101209839 [Cucumis sativus]	[more]
gi\|659122387\|ref\|XP_008461116.1\|	2.0e-59	94.31	PREDICTED: uncharacterized protein LOC103499798 [Cucumis melo]	[more]
gi\|225442973\|ref\|XP_002267834.1\|	9.0e-20	55.56	PREDICTED: probable methyltransferase PMT11 [Vitis vinifera]	[more]
gi\|802603627\|ref\|XP_012073182.1\|	1.5e-19	62.96	PREDICTED: formin-like protein 14 [Jatropha curcas]	[more]
gi\|357468203\|ref\|XP_003604386.1\|	6.4e-18	57.47	transmembrane protein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.105400.1	Cucsa.105400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37706	FAMILY NOT NAMED	coord: 1..127 score: 2.3
None	No IPR available	PANTHER	PTHR37706:SF1	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MSJ11	coord: 1..127 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.105400	Csa7G432560	Cucumber (Chinese Long) v2	cgycuB126
Cucsa.105400	ClCG09G002890	Watermelon (Charleston Gray)	cgywcgB141
Cucsa.105400	CmaCh08G006200	Cucurbita maxima (Rimu)	cgycmaB0241
Cucsa.105400	CmoCh08G006070	Cucurbita moschata (Rifu)	cgycmoB0240
Cucsa.105400	Lsi02G027150	Bottle gourd (USVL1VR-Ls)	cgylsiB133
Cucsa.105400	Cp4.1LG17g08900	Cucurbita pepo (Zucchini)	cgycpeB0230
Cucsa.105400	MELO3C029249.2	Melon (DHL92) v3.6.1	cgymedB133
Cucsa.105400	CsaV3_7G032440	Cucumber (Chinese Long) v3	cgycucB131
Cucsa.105400	Cla97C09G165040	Watermelon (97103) v2	cgywmbB141
Cucsa.105400	Bhi09G000022	Wax gourd	cgywgoB162
Cucsa.105400	Carg23141	Silver-seed gourd	carcgyB0179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.105400	Cucumber (Chinese Long) v3	cgycucB128
Cucsa.105400	Cucumber (Chinese Long) v3	cgycucB129
Cucsa.105400	Watermelon (97103) v2	cgywmbB137
Cucsa.105400	Watermelon (97103) v2	cgywmbB139
Cucsa.105400	Watermelon (97103) v2	cgywmbB140
Cucsa.105400	Wax gourd	cgywgoB160
Cucsa.105400	Cucumber (Gy14) v1	cgycgyB032
Cucsa.105400	Cucumber (Gy14) v1	cgycgyB053
Cucsa.105400	Cucurbita maxima (Rimu)	cgycmaB0236
Cucsa.105400	Cucurbita maxima (Rimu)	cgycmaB0237
Cucsa.105400	Cucurbita maxima (Rimu)	cgycmaB0238
Cucsa.105400	Cucurbita maxima (Rimu)	cgycmaB0239
Cucsa.105400	Cucurbita moschata (Rifu)	cgycmoB0234
Cucsa.105400	Cucurbita moschata (Rifu)	cgycmoB0235
Cucsa.105400	Cucurbita moschata (Rifu)	cgycmoB0236
Cucsa.105400	Cucurbita moschata (Rifu)	cgycmoB0237
Cucsa.105400	Wild cucumber (PI 183967)	cgycpiB124
Cucsa.105400	Wild cucumber (PI 183967)	cgycpiB125
Cucsa.105400	Wild cucumber (PI 183967)	cgycpiB127
Cucsa.105400	Cucumber (Chinese Long) v2	cgycuB123
Cucsa.105400	Cucumber (Chinese Long) v2	cgycuB124
Cucsa.105400	Melon (DHL92) v3.5.1	cgymeB135
Cucsa.105400	Melon (DHL92) v3.5.1	cgymeB133
Cucsa.105400	Watermelon (Charleston Gray)	cgywcgB145
Cucsa.105400	Watermelon (Charleston Gray)	cgywcgB142
Cucsa.105400	Watermelon (Charleston Gray)	cgywcgB144
Cucsa.105400	Watermelon (97103) v1	cgywmB142
Cucsa.105400	Watermelon (97103) v1	cgywmB143
Cucsa.105400	Watermelon (97103) v1	cgywmB145
Cucsa.105400	Cucurbita pepo (Zucchini)	cgycpeB0229
Cucsa.105400	Cucurbita pepo (Zucchini)	cgycpeB0232
Cucsa.105400	Cucurbita pepo (Zucchini)	cgycpeB0233
Cucsa.105400	Cucurbita pepo (Zucchini)	cgycpeB0234
Cucsa.105400	Bottle gourd (USVL1VR-Ls)	cgylsiB132
Cucsa.105400	Bottle gourd (USVL1VR-Ls)	cgylsiB135
Cucsa.105400	Bottle gourd (USVL1VR-Ls)	cgylsiB136
Cucsa.105400	Melon (DHL92) v3.6.1	cgymedB135
Cucsa.105400	Silver-seed gourd	carcgyB0152
Cucsa.105400	Silver-seed gourd	carcgyB0238
Cucsa.105400	Silver-seed gourd	carcgyB1144