Carg22926 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22926
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ATP synthase E chain
Location	Cucurbita_argyrosperma_scaffold_124 : 377037 .. 380412 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCTAGGGCTCCTCTATTCTCAAAATCGGCTTCTGGTTCGACAGCTAGCGCAACTCTTTCTTCTTCTTCTCCATTTACCTTGGAAAGTCCTTTCCATGGCGCTTCCTCCTGGGCCTTATTCAGGATCCAGCACCCTCGCTTTGGTACGTATGTTCAGTTTTGGTTTCCGATCGATTTCATTGAAAATTTTCGACTAGAGATTAGGTTGAATTTCGCGTGTTGTAATGCTATATGCGGAATGTTATTTGAGATTTTATAATGGAAAAATGATAAATTCAACGGTTTTGATCCTTGGCAGGTTGCTCGTGCTTCGGCTTTCTCTGTTGGACTTGTCTACGGAAGCCTCAAGCTCAAGTACCTTCAGGTTTGTTGATTCCGTTTCCTTCTTTTCATATTGTTTGTTTTTCCACTTCAAAACTTAGGCTCATCGAAGTCGGATTGCGTTTCTGGCTTGAATGTTTGTAGGATCTATATTATCATTTCTGATTGCTCTTCCCTGCCAACAGTATCGAGTGCTATCTGCAATTTGTTGTCGCATTCAAGATATAGAATTGTTTTTAATGCATGTATATTTTTTGGGTCAAAATTTCTGGGACACTACGCAGTTACCGGTCAAATACTTGTTTTTTCAAGGCTAAGTTATTCAAAATGCTTTTAAACATTGAGGTTAGGTTCAATTACTTCCTTGTACTTTTAAAAGTATCACCTCTACTTTTGTCCTGTAAATTGATTCACATATGCGCTTGAATTATTTTATCATTGATACGAATTTTGGAAATTGACTTTTAAAAACTGCACTGAAAACGTGGTACTAACCACTAGGTATAATCACTGATGTGGTTGTGAGTTAATAAATGAAGGACAATGTAGCTTGAAAAGTGACTTGTCAGGATATTGAAAGGCCTGTTTGACGTTGCATTCCATATCAATGGTAAAATTGTTGAGGCAGTTTTGAAATCAATGTTAAAGGTGAGGATGGATAGAAGCGAAACTTTTTAAATGAAACAAACTTCTAAGTTTAGGGGCATTTTGAATAATTTAGCCTTTTTTCAATTAGGAAAGTAGAGTAAGAAAGTGAAGGGAGGAAAAAATCTCCTATCAAGTGAAGGGAGTTAGAAAAAGATCCATCTAGTTGACATGAATATCAAAAGAGGAATACTTTCTAGAAAGAATAAACTACCCTAGACCCTTCTGTGATAGGTTTGATAAGTTCTCTTCAACAATTTGTCGAATACTTCCCCCTCCTTCAAGATGCCCCAAAGCACCACTTATTCTTGTTGAAGAAACTCATACCTTCAAAGCAGAAGTTCCACAAAGTAGAAACAAAAGCACATAATGGAAAAAGGTGATTTAATGTCTCAATCTCTTAGTGAGGAAGAAGTCAGTATGAAGATGATAAAGATGAGTTTGGATATTTTTCTTGTATTTTATCCCAAGTCTGTGCCTTACTACTATCTAAGGAGAGTACTGAAAATAAGAAAAGAGCATCTAAGTTTCTGTGGATCCTCCACTTCCATTTAGTCATCATGGAGTGAAATTTAGTTTTTTTTTTTAAAGCTAGAATATTGATTTGTTAGGCCCCGTTTGTTAACCATTTGATTTTGGTTTTTCAGAACTAAGAATACACATTTTACTACTTTTGGGTTTTTTTTTTTTCCCTTGTTTTGTTATCTACTTTTTACACATGTTTTAAAAAAACCGGACCACGTTAGGGAAGCTAAAAAAAAACAGTTTTCAATAACTTGTTTTTATTTTTAGAATTTTTCTAAATATTCAAATGTTTTTTTTTTAAAGAAATATGAAACTCATTGTAGAGAAATGATGGAAAACAAGCTCAATTTAAAATTTATATATATATTAAAAATCAATTAGTTATTAAAATGGGCCTTAGAATTTAGGATTTTCAGTGATACCCATTATGCATGAAGTAATTGTTGTGTTTTTTGTTTCAATATTTTTGTTTTGTTGTTTACTGTTTATTTCACAACAGATTACCATTAATTTTATCATATTGAAATTTAAATTTTAAACATTTTTCTTGAAGCAACTATCTATGTTTTACAACATAGTTCATAAACCTATTAAACTAGATGGATTGGTCTAATGCCATGAAAGTATTAATTGTTCTTATTGGTCTGTTGAATTTCTTTGAACTTGATGGTTAAGTTGGGTTGGATTGAAAATGATATTAGAAGGAAACTATTTTTTGAAATTGAAACTTCAAGTTTGGTTTTTGAACCTTAGTAAGAATGCTTGAAATAAACTATGCGTGGTCTTGGACTATATTTATTAATTTCCATTAATGTACTTAATGACGACCAATGATTTATTCTCTTATTTTTATTCAACTGAAGATCCAAATTATCGTTTATTTCAAGTTGAGGTTTGATAGAACCCAACATGTTATCTGCTATCTTAAAAAGTTTAAATGTAGATAACCTTCAACTTGACTGTGGGATTGTTAGTCACAAGTCATAACTTGTGCACATTTGAAAAGGGAGCGGAAATAAATTGTTTGATGATTTACCATTTTATATTCTATCCATATAGCGCTTGTAAGTTTCTATATGGATTTTGTTTTCGATCCATTTGGTGTAGCATCTTTTGTATCTGTTGCTGTTGTCTTATTTACGAACAGGATTAGTCAATAGGTCGCCAATTATGAAGCATAGATACTTTTGTTTTAGGCCGAGTGTCCGTCTCAGACACATGTTGTACACGGATACGTTCAAACATGCTATTTTACATGTCTTTTTTTTTTTTGTTTTTTGTTTTAATTTCGAACATGGCTTGGAAAATTTTGAATTTTAAAAAAATGCCCAGGGACATGGGGACGTAAAAAAGGAAAGAGAGGTTTAATCGTGAAATTTGAACCCCTAACAAGTAACACCATTGACTACTTGTTGCTAGCTTTCCGTTCTCTTTCTCACAGTAAGTTCACCATTTAGAATATGTTTTTTATGCCATTTAGTGTAGTATATTTAGTATTTCACGTTAATTTTACATATATCTTGAAATAATAATAATAAAAGAACGTACCCCGAACATGTTCGTGTCCTAGTCTCGTAGGAACTGATGTATTGTTGTGTCCTATCACGTCGGTTTTCATGTCCCATTTCCGTGCTTAGGTTTGCCCATCTGTAACCTTGAGTTCTAAGGGGAAGAGGATCTATAGTCCATTGACATTCCTATTCAATTTCAGTTCAACCTATAATCATATTATGATTTCAAAATTTCATGTTATTTGTGGCTCTCTTTTGAAGTCATTCTAAATTCACCTGTCTGTTCTTAAATTTTTACTTTCAATTCCTACTTAATCACTGCAGGCGAAGGCTAAATCTCACAAGAAAGCAGAAGCCAAGGCTCATCACTGA

mRNA sequence

ATTCCTAGGGCTCCTCTATTCTCAAAATCGGCTTCTGGTTCGACAGCTAGCGCAACTCTTTCTTCTTCTTCTCCATTTACCTTGGAAAGTCCTTTCCATGGCGCTTCCTCCTGGGCCTTATTCAGGATCCAGCACCCTCGCTTTGGTTGCTCGTGCTTCGGCTTTCTCTGTTGGACTTGTCTACGGAAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCTAAATCTCACAAGAAAGCAGAAGCCAAGGCTCATCACTGA

Coding sequence (CDS)

ATGGCGCTTCCTCCTGGGCCTTATTCAGGATCCAGCACCCTCGCTTTGGTTGCTCGTGCTTCGGCTTTCTCTGTTGGACTTGTCTACGGAAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCTAAATCTCACAAGAAAGCAGAAGCCAAGGCTCATCACTGA

Protein sequence

MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH

Homology

[Close]

BLAST of Carg22926 vs. NCBI nr
Match: KGN43194.1 (hypothetical protein Csa_7G007920 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 5.2e-18
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MALPPGPYSG+STLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Carg22926 vs. NCBI nr
Match: XP_022952755.1 (uncharacterized protein LOC111455357 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-17
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M LPPGPYSG+STLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MTLPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Carg22926 vs. NCBI nr
Match: XP_022136306.1 (uncharacterized protein LOC111008022 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 5.7e-17
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MALPPGPYSG+STLALVARASAFS GLVYGS KLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSFGLVYGSFKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Carg22926 vs. NCBI nr
Match: PON36954.1 (ATPase, F0 complex, subunit E, mitochondrial [Parasponia andersonii] >PON99950.1 ATPase, F0 complex, subunit E, mitochondrial [Trema orientalis])

HSP 1 Score: 92.4 bits (228), Expect = 4.9e-16
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSG+STLALVARASAFS+GLVYGSLKLKYL+AKAKSHKKAE KAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLKAKAKSHKKAEEKAHH 53

[Close]

BLAST of Carg22926 vs. NCBI nr
Match: XP_024020903.1 (uncharacterized protein LOC21395468 [Morus notabilis])

HSP 1 Score: 92.4 bits (228), Expect = 4.9e-16
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSG+STLALVAR SAFS+GLVYG+LKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARVSAFSLGLVYGNLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Carg22926 vs. TAIR10
Match: AT3G01130.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-13
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPG YSG+STLALVARASAF +GL+YG++KLK L+ K  S  KAEAKAHH
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKNSQIKAEAKAHH 53

[Close]

BLAST of Carg22926 vs. TAIR10
Match: AT5G15320.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-13
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M LPPG YSG+S+LALVARASAF +GLVYG++KLK L+ K+ S KK EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATAHH 53

[Close]

BLAST of Carg22926 vs. TrEMBL
Match: tr|A0A0A0K2E7|A0A0A0K2E7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G007920 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MALPPGPYSG+STLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Carg22926 vs. TrEMBL
Match: tr|A0A2P5FQC9|A0A2P5FQC9_9ROSA (ATPase, F0 complex, subunit E, mitochondrial OS=Trema orientalis OX=63057 GN=TorRG33x02_043680 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSG+STLALVARASAFS+GLVYGSLKLKYL+AKAKSHKKAE KAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLKAKAKSHKKAEEKAHH 53

[Close]

BLAST of Carg22926 vs. TrEMBL
Match: tr|A0A2R6QQ22|A0A2R6QQ22_ACTCH (FAD-dependent cmnm(5)s(2)U34 oxidoreductase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16240 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSG+STLALVAR SAFSVGLVYGS+KLKYL+AKAKSHKKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARVSAFSVGLVYGSMKLKYLKAKAKSHKKAEAKAHH 53

[Close]

BLAST of Carg22926 vs. TrEMBL
Match: tr|A0A2P5AKB4|A0A2P5AKB4_PARAD (ATPase, F0 complex, subunit E, mitochondrial OS=Parasponia andersonii OX=3476 GN=PanWU01x14_324020 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSG+STLALVARASAFS+GLVYGSLKLKYL+AKAKSHKKAE KAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLKAKAKSHKKAEEKAHH 53

[Close]

BLAST of Carg22926 vs. TrEMBL
Match: tr|A0A2N9G4U9|A0A2N9G4U9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25569 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSG+STLALVARASAFS GLVYGS+KLKYL+AKAKSH+KAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKAKSHQKAEAKAHH 53

The following BLAST results are available for this feature:

BLAST of Carg22926 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43194.1	5.2e-18	98.11	hypothetical protein Csa_7G007920 [Cucumis sativus]	[more]
XP_022952755.1	1.5e-17	96.23	uncharacterized protein LOC111455357 [Cucurbita moschata]	[more]
XP_022136306.1	5.7e-17	94.34	uncharacterized protein LOC111008022 [Momordica charantia]	[more]
PON36954.1	4.9e-16	90.57	ATPase, F0 complex, subunit E, mitochondrial [Parasponia andersonii] >PON99950.1...	[more]
XP_024020903.1	4.9e-16	90.57	uncharacterized protein LOC21395468 [Morus notabilis]	[more]

BLAST of Carg22926 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01130.1	3.6e-13	71.70	unknown protein	[more]
AT5G15320.1	3.6e-13	69.81	unknown protein	[more]

BLAST of Carg22926 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22926 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2E7\|A0A0A0K2E7_CUCSA	3.4e-18	98.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G007920 PE=4 SV=1	[more]
tr\|A0A2P5FQC9\|A0A2P5FQC9_9ROSA	3.2e-16	90.57	ATPase, F0 complex, subunit E, mitochondrial OS=Trema orientalis OX=63057 GN=Tor...	[more]
tr\|A0A2R6QQ22\|A0A2R6QQ22_ACTCH	3.2e-16	90.57	FAD-dependent cmnm(5)s(2)U34 oxidoreductase OS=Actinidia chinensis var. chinensi...	[more]
tr\|A0A2P5AKB4\|A0A2P5AKB4_PARAD	3.2e-16	90.57	ATPase, F0 complex, subunit E, mitochondrial OS=Parasponia andersonii OX=3476 GN...	[more]
tr\|A0A2N9G4U9\|A0A2N9G4U9_FAGSY	1.2e-15	88.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25569 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	hydrogen ion transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

Vocabulary: **INTERPRO**
Term	Definition
IPR008386	ATP_synth_F0_esu_mt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	hydrogen ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22926-RA	Carg22926-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008386	ATP synthase, F0 complex, subunit E, mitochondrial	PFAM	PF05680	ATP-synt_E	coord: 11..51 e-value: 2.4E-5 score: 24.5
None	No IPR available	PANTHER	PTHR36028	FAMILY NOT NAMED	coord: 1..53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22926	Csa7G007920	Cucumber (Chinese Long) v2	carcuB0240
Carg22926	MELO3C013404	Melon (DHL92) v3.5.1	carmeB0218
Carg22926	ClCG02G004430	Watermelon (Charleston Gray)	carwcgB0208
Carg22926	CSPI07G00530	Wild cucumber (PI 183967)	carcpiB0246
Carg22926	CmaCh11G010630	Cucurbita maxima (Rimu)	carcmaB0291
Carg22926	CmaCh19G007060	Cucurbita maxima (Rimu)	carcmaB0293
Carg22926	CmoCh19G007150	Cucurbita moschata (Rifu)	carcmoB0299
Carg22926	Lsi11G011530	Bottle gourd (USVL1VR-Ls)	carlsiB189
Carg22926	Cp4.1LG04g01200	Cucurbita pepo (Zucchini)	carcpeB0302
Carg22926	Cp4.1LG15g05650	Cucurbita pepo (Zucchini)	carcpeB0300
Carg22926	CsGy7G000450	Cucumber (Gy14) v2	carcgybB0229
Carg22926	MELO3C013404.2	Melon (DHL92) v3.6.1	carmedB0224
Carg22926	CsaV3_7G000550	Cucumber (Chinese Long) v3	carcucB0244
Carg22926	Cla97C02G031380	Watermelon (97103) v2	carwmbB0216

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22926	Cucurbita moschata (Rifu)	carcmoB0297