Carg22857 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22857
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_248 : 80634 .. 84872 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCGATTCTTCATTTTCTCTTTATTCCTTCTTTCCCGCTGTTTTCTCTCTCGTTTTCTTTCAGTTTTTTCCTGAAAACTTCTCGCCTCGCTCAGCTTTTCTTGCTGCACTTCAGGTACTTCTCGCCGACGTTCTTCTCTATTTTCTTCGTCTTCGTTTTCTTCTTCTTCTTCTTCTTCCTTTTTCTATGTCTTACTAGTTAGGTTTTCAGATCTGTAAGAAATGATTCTAGGTTTTTTATTCTGCCTGAATCTTCGTTTTCCTCTTGTTTCTTTGTTTTACGAGTTTGACTGTTTTCTTTCATGGTATCGCGGTTGCTTCGACTGGATTTCAAGTAGATCTAACTGTGTACGTTGTTTTTGCGTTCTCTTTGTTTGCAGGTTCTCTGGACCGTACAACAATGGAGACCGCAACTTCTTCTATTCATCAGCGTTTGCTGCTAGCGTGCGCCGGAAGCACTTCGGCCACGCTGCTTGGCCTCGTCGCTATGGCCGAGTTGCTTGCTTCGTCTCAGGTGAAGTTACTGCTCTTTGTTCTTTCAACTTCGTTAGTGATCGTGTTTGGTATATCGATTCTGTTTTCGAGTATTCTATTTTTTTCCATTTTTTATGAGCTTTTGAAATTTTTTTTTTAGGAAAGGTTAGAAACCGAAAATGATTTGAAATCAGAATAATACCTTTTGAATTGTTTTTACGATACGAAAGTCGACATCTCGCGAGGACGATGTTAAGGTTTAAATTCTATGGTGCCTACTTTTCAACTTTATTCTTTTTTTTTTTTTTTTTTTTAACTTTTAAAATTTTATTCTATTCTTAAAACTCAAACTTGTTTCACCTCAAAATTTGTTAAGTTTTTTAGTTTATATACTTAAAAAAAAAAAAAATTAGTCTTACTTTTATTTTAATTTATTAAGTTAATGATGTTCTTTAATTCAACCATTTAATGATATATTGACATAGTAATAGAAACAACATTTCAACCTGAATAAGTTAAAAGACTAATATTATTAGAAAAAAAACAGATTTAAGACGGATAAATTGATATCAAAATTAAAATAGTTACTTTTTAGAAGTTTAAGAACCGGAGCAAATTAGAATAAACATTAGAAAAATTAAGTTCAAAATAAAAGTATAACAAACTTCAAATTTAAAAGATTAAAATGGAAGTTCAACCATTCTTGAAGTGTAAATCATATTTTTGTCTTATTTATACTCTAGTTCTTTCAAACCGATCATTTCACGAAAGATGAGACTCCTAAAGTTGTTTTGTCCTTTGGTATTTAAATGTTTTTGCAAACGTTTTTTTTAAATGTTTTTGCAAAAGTGAGAAATACTTTGAACCTTTGAAATTTTAAAATAATACACTTCCATTTAAAAAAATTGAAAAAAAAAATACCTTACAATTAGTTGTAAATACTGTTTAAAAAATATTCTTAAAAATGTATGAGAACTGCCTTAAATTTTTAGAAAAATGTTTTAAAACATTTTATTGTAGGTATTCTTAAAATTGAAGAGAATAGTTGATCTATGAGTTGTTTTTAACCTCTTTAAAAAAAAAAAAAAAAATCTAAAATACAAACTTTTTTAAGAAGTATTGTTTTAAAAGATTTTATTGAAAGTATTTTTTAAAACAAAGAGATAGATGATCTATGAGGTATAAGTGTAAGTTTTTTTGTTCATATATCGACAATAATAACATTTATATATTTCTATAAATCTTAAACGTGTTAATACTATACTTAAAAGTTCTATGGATATTTTTTAAAAGTCATAGTAATGAACTTTTTAAAAAAAGTTTAAGAGCATTTATAAAACTTTTTAAAGTCTATTGATATACTTTTTTTTTTTTTTAATACTTTTAAAAGTTTGAAAGGTTATATAAAAGTATTAACAATTTTTGTTTAAAATTAACCATAATTATTATTTCTTTTAACCTTATTTCTTTTTAACTTCATAAAAATTTAAAGCTATCATTCAAACTTTTGAAAGTTTTTTTTAAGACAAAAGTATGAATAATTTTTTTTATGAATTTAGCTAGTATTTTGATTTTTTGTTTAAATATAAATTTTTATCTTAAATTTGTTTCTCACTGATTAAAATATTCTATAATATTTGTTGAAGTTGATTTATTTAAATTAAACTAACTTTAAAATGACTATTTTCGTGGTCAAAGATTTAGAATCCTCCTAAACTTCATATACTGTTTTAACTCAAAATAACAAAGTAATAATAATATTAATAATAACAATAACATGAGATGAGTAAATTATAAGTCAATAACGTGCCGCTAAGTTCTTGTTTTCATGAAAAACTCTCTTTAGTCAGTAGTTTAATTTGATAAAAACATTTTTATACATCGTCATATTTTCAATGAACTTTAATTTACAAAGCTAGCAAGGACTCGAATGGGGAAAAATCAATATTTAAAGGATGATAGTTAATAATAAAAAGAAATAGAATATTAACAAAATTGAAAATTTTCACACACATTACGAGTACAACCATTTATTTTGCCTTTTTCTTAAATCTTATATTTATAGATTAAGAATTGTACTACATTTAATTTCGTTAAACTTGATAATAAAATCATTATTTGAATTCACAAACAATGAATGTTAATATATGTTGGGTTCTTAAATACAACGAACTTTTAGAATTTGAATTTCAGAAATAAACTTTTCAAAGAATAAAGATAGACAAAATATCGGTTAAACTTATCCTAAAAGAAAAAATAGTTAGAAAGGTTTAGAGATGTCTATGGGAGGGGTGGAAATGGGACCTATTGCATTCCCTGTCTTGCAAAATTTTTCAATAATTTTTGTGGGATCATTTTACCGGCTAAATTTTTTCTTCATTTAATATTTTTTCTAAATAATTATTTTAAGGTTTTCAACTTTCAACTGTCTTCATAAAAAATGGTAAAAAAATGAACTAACGATTAAAAAAAAATATACAACCTAATTTCTAACTTGAATATTATTGTAATAGTATGAATTTTGTAAAGTAAAATGTTGCTATGAGTTGGGACGAGGGAGATTGAAGGTTCCAAAAAGTAGAATGGAGATTACAATTGCTTTAGAAACTCTACCTATATGTATACAGGGAATCCCCACCTTGAACCCTGTATAAACGGGGAATTTCTGCATCGTCTTGGGTGGGTTTCCATAGAGTCGAACCCTTCGAATAAAATGTACATTTCTAGAAATGTTGGGTATGCATGGTGCAATGCATAATAATATACATGTACTTCAAGACTGATGCGGAAGTCTTCTGCAGACGACCTAACCAATCAATCCTAGTGCGTTCATCCTAAATTTAAGAAAGTAATATGGTTATTATACTTTGATACCCTGCAATTTTGTTTTATATCTATATAATTTGTGGCTCAACAGTGCCTTTCCTCCCCCATCTGGCTTTATTGAGGCCACTAAGGAAGGAATCACATGCAGGGGCAATGCACCGGTTTCCGGAGTTACTGTTTAATATTTCTTTTTTATTCGTTCTTGTCATCCTTGTTCCTATTTTTTGGTGACCCACAGTAGTTGCTCTTTCTTGTATTTGGTTTAACTCGCTGATGGAGCATATCTTTCTGGCGTGATTCAAATTCCTTTTTCATCATCTAGTTCCTGGCTCCGAATGAGATGGATGCCATTGCTGTATTCAACAAGAAAAGGAAATTCACTTCCGGGAAACGTCAGACTGGAGGAGAAAATGAAAATCAGAATAACGACAGTGATAACGAACACGGAGATGAACAAGATGCACTTGAAAATGGAGAAGATGGTAAAAATGCTCCCACTAAAGATGGTGCTAATGGAGGGGAAGAAGCTAGCAACGATAACGGGGATGGTGGAAGTGAGAACAGTGGTGATGGTGGTGGGGATGAAGATGACGAAGACGACGGTGGAAGCGAAGAGAATGATGAAGACAATAAAGAAGATGAAGAGGATTTCGATGAAGAAGACGTAGAGGAAGACACCTTTGAAGGAGAAGACGATGAAGAAACCCTCCCACCACCAAAGAAGAGAAAGAAGTAAAAAGGGGAAATCCAATCAAGAAATATGCGAACTACGCAAGCAAGTTTCTAATTATCTTTCCAAACCAATGACACTGATTCCATTTTGTTGTACCTTTCGGAGACTAAAAGCTCTCAAGACACATTGCTGAGCCAATTTAACTTAAACAAAGCAACCGCTATCTTAGTAGTATCATAGCGTTTGTAAGCCGATAGTTTATGTT

mRNA sequence

TTTTCGATTCTTCATTTTCTCTTTATTCCTTCTTTCCCGCTGTTTTCTCTCTCGTTTTCTTTCAGTTTTTTCCTGAAAACTTCTCGCCTCGCTCAGCTTTTCTTGCTGCACTTCAGGTTCTCTGGACCGTACAACAATGGAGACCGCAACTTCTTCTATTCATCAGCGTTTGCTGCTAGCGTGCGCCGGAAGCACTTCGGCCACGCTGCTTGGCCTCGTCGCTATGGCCGAGTTGCTTGCTTCGTCTCAGGTGAAGTTACTGCTCTTTGTTCTTTCAACTTCGTTAGTGATCGTGTTTGTGCCTTTCCTCCCCCATCTGGCTTTATTGAGGCCACTAAGGAAGGAATCACATGCAGGGGCAATGCACCGTTCCTGGCTCCGAATGAGATGGATGCCATTGCTGTATTCAACAAGAAAAGGAAATTCACTTCCGGGAAACGTCAGACTGGAGGAGAAAATGAAAATCAGAATAACGACAGTGATAACGAACACGGAGATGAACAAGATGCACTTGAAAATGGAGAAGATGGTAAAAATGCTCCCACTAAAGATGGTGCTAATGGAGGGGAAGAAGCTAGCAACGATAACGGGGATGGTGGAAGTGAGAACAGTGGTGATGGTGGTGGGGATGAAGATGACGAAGACGACGGTGGAAGCGAAGAGAATGATGAAGACAATAAAGAAGATGAAGAGGATTTCGATGAAGAAGACGTAGAGGAAGACACCTTTGAAGGAGAAGACGATGAAGAAACCCTCCCACCACCAAAGAAGAGAAAGAAGTAAAAAGGGGAAATCCAATCAAGAAATATGCGAACTACGCAAGCAAGTTTCTAATTATCTTTCCAAACCAATGACACTGATTCCATTTTGTTGTACCTTTCGGAGACTAAAAGCTCTCAAGACACATTGCTGAGCCAATTTAACTTAAACAAAGCAACCGCTATCTTAGTAGTATCATAGCGTTTGTAAGCCGATAGTTTATGTT

Coding sequence (CDS)

TTTTCGATTCTTCATTTTCTCTTTATTCCTTCTTTCCCGCTGTTTTCTCTCTCGTTTTCTTTCAGTTTTTTCCTGAAAACTTCTCGCCTCGCTCAGCTTTTCTTGCTGCACTTCAGGTTCTCTGGACCGTACAACAATGGAGACCGCAACTTCTTCTATTCATCAGCGTTTGCTGCTAGCGTGCGCCGGAAGCACTTCGGCCACGCTGCTTGGCCTCGTCGCTATGGCCGAGTTGCTTGCTTCGTCTCAGGTGAAGTTACTGCTCTTTGTTCTTTCAACTTCGTTAGTGATCGTGTTTGTGCCTTTCCTCCCCCATCTGGCTTTATTGAGGCCACTAAGGAAGGAATCACATGCAGGGGCAATGCACCGTTCCTGGCTCCGAATGAGATGGATGCCATTGCTGTATTCAACAAGAAAAGGAAATTCACTTCCGGGAAACGTCAGACTGGAGGAGAAAATGAAAATCAGAATAACGACAGTGATAACGAACACGGAGATGAACAAGATGCACTTGAAAATGGAGAAGATGGTAAAAATGCTCCCACTAAAGATGGTGCTAATGGAGGGGAAGAAGCTAGCAACGATAACGGGGATGGTGGAAGTGAGAACAGTGGTGATGGTGGTGGGGATGAAGATGACGAAGACGACGGTGGAAGCGAAGAGAATGATGAAGACAATAAAGAAGATGAAGAGGATTTCGATGAAGAAGACGTAGAGGAAGACACCTTTGAAGGAGAAGACGATGAAGAAACCCTCCCACCACCAAAGAAGAGAAAGAAGTAA

Protein sequence

FSILHFLFIPSFPLFSLSFSFSFFLKTSRLAQLFLLHFRFSGPYNNGDRNFFYSSAFAASVRRKHFGHAAWPRRYGRVACFVSGEVTALCSFNFVSDRVCAFPPPSGFIEATKEGITCRGNAPFLAPNEMDAIAVFNKKRKFTSGKRQTGGENENQNNDSDNEHGDEQDALENGEDGKNAPTKDGANGGEEASNDNGDGGSENSGDGGGDEDDEDDGGSEENDEDNKEDEEDFDEEDVEEDTFEGEDDEETLPPPKKRKK

Homology

[Close]

BLAST of Carg22857 vs. NCBI nr
Match: XP_022939135.1 (uncharacterized protein DDB_G0290685-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 121 NAPFLAPNEMDAIAVFNKKRKFTSGKRQTGGENEN 156
           ++ FLAPNEMDAIAVFNKKRKFTSGKRQTGGENEN
Sbjct: 36  SSQFLAPNEMDAIAVFNKKRKFTSGKRQTGGENEN 70

[Close]

BLAST of Carg22857 vs. NCBI nr
Match: XP_022939134.1 (uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 121 NAPFLAPNEMDAIAVFNKKRKFTSGKRQTGGENEN 156
           ++ FLAPNEMDAIAVFNKKRKFTSGKRQTGGENEN
Sbjct: 46  SSQFLAPNEMDAIAVFNKKRKFTSGKRQTGGENEN 80

[Close]

BLAST of Carg22857 vs. NCBI nr
Match: XP_022993040.1 (uncharacterized protein DDB_G0290685-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 8.2e-08
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 121 NAPFLAPNEMDAIAVFNKKRKFTSGKRQTGGENEN 156
           ++ FL PNEMDAIAVFNKKRKFTSGKRQTGGENEN
Sbjct: 36  SSQFLVPNEMDAIAVFNKKRKFTSGKRQTGGENEN 70

[Close]

BLAST of Carg22857 vs. NCBI nr
Match: XP_022993039.1 (uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 8.2e-08
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 121 NAPFLAPNEMDAIAVFNKKRKFTSGKRQTGGENEN 156
           ++ FL PNEMDAIAVFNKKRKFTSGKRQTGGENEN
Sbjct: 46  SSQFLVPNEMDAIAVFNKKRKFTSGKRQTGGENEN 80

[Close]

BLAST of Carg22857 vs. NCBI nr
Match: XP_023549966.1 (uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 121 NAPFLAPNEMDAIAVFNKKRKFTSGKRQTGGENE 155
           ++ FL PNEMDAIAVFNKKRKFTSGKRQTGGENE
Sbjct: 46  SSQFLVPNEMDAIAVFNKKRKFTSGKRQTGGENE 79

The following BLAST results are available for this feature:

BLAST of Carg22857 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939135.1	2.8e-08	91.43	uncharacterized protein DDB_G0290685-like isoform X2 [Cucurbita moschata]	[more]
XP_022939134.1	2.8e-08	91.43	uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita moschata]	[more]
XP_022993040.1	8.2e-08	88.57	uncharacterized protein DDB_G0290685-like isoform X2 [Cucurbita maxima]	[more]
XP_022993039.1	8.2e-08	88.57	uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita maxima]	[more]
XP_023549966.1	4.1e-07	88.24	uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita pepo subsp. pepo...	[more]

BLAST of Carg22857 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg22857 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22857 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22857-RA	Carg22857-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..260

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22857	Cla011900	Watermelon (97103) v1	carwmB1081
Carg22857	Csa2G403660	Cucumber (Chinese Long) v2	carcuB1097
Carg22857	MELO3C008129	Melon (DHL92) v3.5.1	carmeB1051
Carg22857	ClCG11G008040	Watermelon (Charleston Gray)	carwcgB1051
Carg22857	CSPI02G25040	Wild cucumber (PI 183967)	carcpiB1119
Carg22857	Cucsa.088240	Cucumber (Gy14) v1	carcgyB1196
Carg22857	CmaCh04G030040	Cucurbita maxima (Rimu)	carcmaB1497
Carg22857	CmaCh15G000410	Cucurbita maxima (Rimu)	carcmaB1496
Carg22857	CmoCh04G031240	Cucurbita moschata (Rifu)	carcmoB1454
Carg22857	CmoCh15G000410	Cucurbita moschata (Rifu)	carcmoB1453
Carg22857	Lsi03G004510	Bottle gourd (USVL1VR-Ls)	carlsiB986
Carg22857	CsGy2G024760	Cucumber (Gy14) v2	carcgybB1062
Carg22857	MELO3C008129.2	Melon (DHL92) v3.6.1	carmedB1065
Carg22857	CsaV3_2G033560	Cucumber (Chinese Long) v3	carcucB1130
Carg22857	Cla97C11G215470	Watermelon (97103) v2	carwmbB1138

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22857	Carg06077	Silver-seed gourd	carcarB028

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22857	Wax gourd	carwgoB1273
Carg22857	Cucurbita pepo (Zucchini)	carcpeB1508
Carg22857	Cucurbita pepo (Zucchini)	carcpeB1509