CSPI02G25040 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G25040
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr2 : 21420416 .. 21423814 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCATCTTCTCGCTCTCTTCAACCCAATCATATCCAACGCTCCTTCTTCTGCCACGTCTCACATATTCAAACCTCCCTCACACTCTCTGAGCTTCATTTCTCTCTTTTCTCACACTAATTTGATTCTTCCCTTTCCTTTTCTTCCCATTCTTCATTTTCCTTTCACTTTCCCGCTGTTTTTCTTTCTCCTTTTCTTTCATCTTTTTTCCTTCAAATTCTCTCTGCTCCCTCACTACTCATTTCTTCTTCTTCTTCTTCTTCTTCCTTCCTGCTCCACTTCTTCACACAGGTAACGCTTTAATTAACCTTATTCTACCTATTCTTTCTATTTTCTTCTTCTTCGTTTTCTATTCTATTAGTGATTAGGTTTTCAGATCTGGAAGATACGATGATTCGAGGTTTTCGATTCTGTTTTTTTTTTCTTTATATATATATATAAATAAATTTTGATTGTTCTTTATTATGATCCTGCGGTTGTTTAAAGTACTGGATTGTGAGTAGATCTAACTTAGTAGGTTGTTTTTGCGTTCTACTTATTTGTAGATTTTTTGGACCGTACAACAATGGAGATCGAAACTGCTTCTGTTCATCAGCGTTTGCTTCTAACGTTTTCCGAAGGCATTTCGGCGACGCTGTTTGGCTTTGTTGCTTTGGCCGAATTGCTTGCTTCGTCTCAGGTGAAGTTAAACCGCTCTTTTCTTCTTTCAACTTCGTTAATGATCGTTTTTGTTATGTTGATGATTCTGTCTTTTATTATTTTAAATATTTTTTTGTGAGCTTTTGAATTTTACTTTTAGAAAAGGTTAGAAGCAGAAAGTGATTTTAAGTCGGAATAATTTCCCGTGTTCTTTTCCTTTTTAATTGTTGTTACAATACGATATCTCCTGAGATTGTATTGTTAATGTTCAATTTCAAACACGTTTAAGAACAATTTTCAAAGCTAAATCAAAAAATATTTATAAATACACATCACTAATATTTTGTTGTTATAAGATTTTCAAGACTAATATGAACCTTCGTCCTTTAAAGATTAAAGTTGAAGGAGACCATTAGATTTAAACCTCATTTAAATTGTTTTAATGCAAATGACTAGAGACTGAAACGGAACATATGACTATATCATAAAACACATATATTATAAATAGAACTTTAACACTTGAAAAGTATAGACCATAATTTGTCTTTATTTGAACTCATGATAGGCGAGATTCCCAAGGCTTTTTGTCCTCTGACTTTTTACACATTTTATTTTCCATTTTTAAAATCATTTTATAAGCAAAATTTCCTTCTAACTTTATTTTTTTTATTTATAACTAAAATAATATAAATAAGTAAAACTGTCTTCTTCAACCTCATGCTATTTTAAATAATATTTGCAAGAATATGGTGTTGTACTTTTAAGATTATTCGTAAAAATCGAGCCAAAATTGTCATTATTTAGAATCTTCATAAAATGAGACTTAGCCAAATTCTTAAAGCTATTTTTTACAATTGCTTTTTCGAATACGTAGGAAAGACTCCATTTTCTCTCTCTCTCTCTCTCTCTCCTCAACGTCGTTTTATTTGTTGAGATTTTCCCTAATTTCTTTTTCCCTCTCGTTTTTTTAATTATTTGACTTTAGGGGTGAGGGTGGATTTTTTTCTCTCTAGTTTTTTCAATAATGCCACCAACTCTTAGTTTTTTTCTTTTACTTTTCAAACTCTCCAATGATTTTACTCGATCTTTTCATTGTTTTATTGGAAGGTTTTCTATATATGTTTGTGTGGACATTGTGTATGAGTTTTTATGTTTCTTAAATTTTGTAAAATATATCGTAAATAATTTTCAAATGTTAAAAACTCTTTAAATTAAAACGGAAAGATGATTTTATCAACAAATTAATTTATTTTCTTGTACAAAAGAGACTAGAAAACAATTAAAAATAAAAAGGTAAAGATGATAGAAAAATGTCAGAGAGTTTGTAAACATTAAAAGATTAAACAAAAAAAATGAAAAGAAATACTAACAAATGGGAGTTCATATTTTGTGACGTCACGTATAAAAACAAAATGTGAAGTTCACTAATTCTATCTCAATTTCTCAGTAAAAAGAAATTAGTGTTCTAAGTTTGTGAACTTATGTAGATAAATCTGGAAAATTGATCCACCTCCTCAAGTAAACATTATAAAACAAAAAAAAAAAAGGAGGAAAAGGGGAAAAGAGAGTTTTCTTTATCACAAAAAGATATAAAATGAAAAAGAAAAAGAAAAAAAATGTATGTGTATATATATATATATAGATATATATAAAGTTCATTAAGTTTGGCAACTTTGCAATTTTTTTAAAAAGAATGTTAGTAGATGTGTTAATAATTTAAATCTAATTGCTGTGTATATGAATAAATTAAACCCAACCCATTTAGTTTTCACATAAACTTCAATCTTGTGTTTGTTCGGCTCAACAATGGCATCCCTGGCCCATTATGGTCACCTTCCTCCCCTAGCCGAATTGGGGCCACGAGAAATCGAATCACATCGCTTTTTGGAGTTCCGTTTATTCCTTTATTCTTTTCTTATCATCATTCCTGCTTCTACTTTTTTGGTTCCTTTTGGTAGATAGTTTATAATTAGCTTGTACTTCTTTCTTGCATTTTGTTTAACTCACTGTTGGGGGGTTATATTTTTGTTGTGACATGAATTCAAATTTGATTGTTCATCCAGTTCCTTGATTCGAATAAGATGGATGTCATTGATGCATCCAACGAGAAAAGGAAATCCAAGTCTAGGAAATGTCAGACGACAAGGCCGATCGATGGAGAAGAAAATGAGAATGAGAATAACGACAGCGATAACGAACTTGGAGAGGATCAAGATGTGCATGAAAATGGAGAAGAAGGTAAAAATGCTCCTCCTACTAAAGATGGTGCTAACGGAGGAGGAGAAGATGGTAGCAATGATAATGGTGATGGTGGGAGTGAGAATAGTGGTGAGGGTGGTGATGAGGAAGAAGAAAATGATGATGGTGGGAGTGATGAGAACAATGAAGATAATAATGAAGACGATGATGACGTGGATGAAGAAGATGCAGAGGAAGACAACTTTGAAGGAGAAGAGGATGATGAAGAAACCCTTCCACCACCAAAGAAGAGAAAGAAGTAGAAAAAGAAAAAGAAGAAGAAGAAAAAGGAAAAATATGCTAACAGTGAAAGCGCTTTCTAATTATCCTAATGAGACTGCTTTGCTTCCAATTGTAAGTTTTGGAGACTAAAAGCTCTCAGCCAATTTGACCTAAACAAAGCAATCGCTATCTTAGTGTTATAGCCTTTGTGTATGCACTAATGTTTTTAGTTTTTTTTATGAAAGTTCTTCCATTGATTCAACAAACACCTCCTGCTCTTTCTATTGTTACATATTCACA

mRNA sequence

ATGGAGATCGAAACTGCTTCTGTTCATCAGCGTTTGCTTCTAACGTTTTCCGAAGGCATTTCGGCGACGCTGTTTGGCTTTGTTGCTTTGGCCGAATTGCTTGCTTCGTCTCAGTTCCTTGATTCGAATAAGATGGATGTCATTGATGCATCCAACGAGAAAAGGAAATCCAAGTCTAGGAAATGTCAGACGACAAGGCCGATCGATGGAGAAGAAAATGAGAATGAGAATAACGACAGCGATAACGAACTTGGAGAGGATCAAGATGTGCATGAAAATGGAGAAGAAGGTAAAAATGCTCCTCCTACTAAAGATGGTGCTAACGGAGGAGGAGAAGATGGTAGCAATGATAATGGTGATGGTGGGAGTGAGAATAGTGGTGAGGGTGGTGATGAGGAAGAAGAAAATGATGATGGTGGGAGTGATGAGAACAATGAAGATAATAATGAAGACGATGATGACGTGGATGAAGAAGATGCAGAGGAAGACAACTTTGAAGGAGAAGAGGATGATGAAGAAACCCTTCCACCACCAAAGAAGAGAAAGAAGTAG

Coding sequence (CDS)

ATGGAGATCGAAACTGCTTCTGTTCATCAGCGTTTGCTTCTAACGTTTTCCGAAGGCATTTCGGCGACGCTGTTTGGCTTTGTTGCTTTGGCCGAATTGCTTGCTTCGTCTCAGTTCCTTGATTCGAATAAGATGGATGTCATTGATGCATCCAACGAGAAAAGGAAATCCAAGTCTAGGAAATGTCAGACGACAAGGCCGATCGATGGAGAAGAAAATGAGAATGAGAATAACGACAGCGATAACGAACTTGGAGAGGATCAAGATGTGCATGAAAATGGAGAAGAAGGTAAAAATGCTCCTCCTACTAAAGATGGTGCTAACGGAGGAGGAGAAGATGGTAGCAATGATAATGGTGATGGTGGGAGTGAGAATAGTGGTGAGGGTGGTGATGAGGAAGAAGAAAATGATGATGGTGGGAGTGATGAGAACAATGAAGATAATAATGAAGACGATGATGACGTGGATGAAGAAGATGCAGAGGAAGACAACTTTGAAGGAGAAGAGGATGATGAAGAAACCCTTCCACCACCAAAGAAGAGAAAGAAGTAG

Homology

[Close]

BLAST of CSPI02G25040 vs. TrEMBL
Match: A0A0A0LSW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G403660 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.0e-76
Identity = 179/184 (97.28%), Postives = 182/184 (98.91%), Query Frame = 1


Query: 1   MEIETASVHQRLLLTFSEGISATLFGFVALAELLASSQFLDSNKMDVIDASNEKRKSKSR 60
           MEIETASVHQRLLLTF+ GISATLFGFVALAELLASSQFLDSNKMDVIDAS+EKRKSKSR
Sbjct: 1   MEIETASVHQRLLLTFAGGISATLFGFVALAELLASSQFLDSNKMDVIDASDEKRKSKSR 60

Query: 61  KCQTTRPIDGEENENENNDSDNELGEDQDVHENGEEGKNAPPTKDGANGGGEDGSNDNGD 120
           KCQTTRPI+GEENENENNDSDNELGEDQDVHENGEEGKNAPPTKDGANGGGEDGSNDNGD
Sbjct: 61  KCQTTRPIEGEENENENNDSDNELGEDQDVHENGEEGKNAPPTKDGANGGGEDGSNDNGD 120

Query: 121 GGSENSGEGGD-EEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK 180
           GGSENSGEGGD EEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK
Sbjct: 121 GGSENSGEGGDEEEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK 180

Query: 181 KRKK 184
           KRKK
Sbjct: 181 KRKK 184

[Close]

BLAST of CSPI02G25040 vs. NCBI nr
Match: gi|778673023|ref|XP_004138812.2| (PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-76
Identity = 179/184 (97.28%), Postives = 182/184 (98.91%), Query Frame = 1


Query: 1   MEIETASVHQRLLLTFSEGISATLFGFVALAELLASSQFLDSNKMDVIDASNEKRKSKSR 60
           MEIETASVHQRLLLTF+ GISATLFGFVALAELLASSQFLDSNKMDVIDAS+EKRKSKSR
Sbjct: 11  MEIETASVHQRLLLTFAGGISATLFGFVALAELLASSQFLDSNKMDVIDASDEKRKSKSR 70

Query: 61  KCQTTRPIDGEENENENNDSDNELGEDQDVHENGEEGKNAPPTKDGANGGGEDGSNDNGD 120
           KCQTTRPI+GEENENENNDSDNELGEDQDVHENGEEGKNAPPTKDGANGGGEDGSNDNGD
Sbjct: 71  KCQTTRPIEGEENENENNDSDNELGEDQDVHENGEEGKNAPPTKDGANGGGEDGSNDNGD 130

Query: 121 GGSENSGEGGD-EEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK 180
           GGSENSGEGGD EEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK
Sbjct: 131 GGSENSGEGGDEEEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK 190

Query: 181 KRKK 184
           KRKK
Sbjct: 191 KRKK 194

[Close]

BLAST of CSPI02G25040 vs. NCBI nr
Match: gi|778673026|ref|XP_011649914.1| (PREDICTED: uncharacterized protein DDB_G0290685-like isoform X2 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-76
Identity = 179/184 (97.28%), Postives = 182/184 (98.91%), Query Frame = 1


Query: 1   MEIETASVHQRLLLTFSEGISATLFGFVALAELLASSQFLDSNKMDVIDASNEKRKSKSR 60
           MEIETASVHQRLLLTF+ GISATLFGFVALAELLASSQFLDSNKMDVIDAS+EKRKSKSR
Sbjct: 1   MEIETASVHQRLLLTFAGGISATLFGFVALAELLASSQFLDSNKMDVIDASDEKRKSKSR 60

Query: 61  KCQTTRPIDGEENENENNDSDNELGEDQDVHENGEEGKNAPPTKDGANGGGEDGSNDNGD 120
           KCQTTRPI+GEENENENNDSDNELGEDQDVHENGEEGKNAPPTKDGANGGGEDGSNDNGD
Sbjct: 61  KCQTTRPIEGEENENENNDSDNELGEDQDVHENGEEGKNAPPTKDGANGGGEDGSNDNGD 120

Query: 121 GGSENSGEGGD-EEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK 180
           GGSENSGEGGD EEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK
Sbjct: 121 GGSENSGEGGDEEEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK 180

Query: 181 KRKK 184
           KRKK
Sbjct: 181 KRKK 184

[Close]

BLAST of CSPI02G25040 vs. NCBI nr
Match: gi|659081260|ref|XP_008441238.1| (PREDICTED: uncharacterized protein DDB_G0290685-like [Cucumis melo])

HSP 1 Score: 265.8 bits (678), Expect = 5.7e-68
Identity = 169/184 (91.85%), Postives = 175/184 (95.11%), Query Frame = 1


Query: 1   MEIETASVHQRLLLTFSEGISATLFGFVALAELLASSQFLDSNKMDVIDASNEKRKSKSR 60
           MEIE +SVHQRLLLTF+ GISATLFGFVALAELLAS++FLDSNKMDVIDASNEKRKSKSR
Sbjct: 1   MEIENSSVHQRLLLTFAAGISATLFGFVALAELLASTEFLDSNKMDVIDASNEKRKSKSR 60

Query: 61  KCQTTRPIDGEENENENNDSDNELGEDQDVHENG-EEGKNAPPTKDGANGGGEDGSNDNG 120
           KCQTTR  DGEENENENNDSDNELG+ QDVHENG EEGKNA PTKDGAN G EDGSNDNG
Sbjct: 61  KCQTTRLTDGEENENENNDSDNELGDGQDVHENGEEEGKNA-PTKDGAN-GEEDGSNDNG 120

Query: 121 DGGSENSGEGGDEEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK 180
           DGGSENSGEGGD+EEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK
Sbjct: 121 DGGSENSGEGGDDEEENDDGGSDENNEDNNEDDDDVDEEDAEEDNFEGEEDDEETLPPPK 180

Query: 181 KRKK 184
           KRKK
Sbjct: 181 KRKK 182

The following BLAST results are available for this feature:

BLAST of CSPI02G25040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G25040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW9_CUCSA	1.0e-76	97.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G403660 PE=4 SV=1	[more]

BLAST of CSPI02G25040 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G25040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673023\|ref\|XP_004138812.2\|	1.5e-76	97.28	PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus...	[more]
gi\|778673026\|ref\|XP_011649914.1\|	1.5e-76	97.28	PREDICTED: uncharacterized protein DDB_G0290685-like isoform X2 [Cucumis sativus...	[more]
gi\|659081260\|ref\|XP_008441238.1\|	5.7e-68	91.85	PREDICTED: uncharacterized protein DDB_G0290685-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G25040.1	CSPI02G25040.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G25040	Csa2G403660	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G25040	MELO3C008129	Melon (DHL92) v3.5.1	cpimeB116
CSPI02G25040	ClCG11G008040	Watermelon (Charleston Gray)	cpiwcgB112
CSPI02G25040	MELO3C008129.2	Melon (DHL92) v3.6.1	cpimedB112
CSPI02G25040	CsaV3_2G033560	Cucumber (Chinese Long) v3	cpicucB081
CSPI02G25040	Cla97C11G215470	Watermelon (97103) v2	cpiwmbB106
CSPI02G25040	Bhi04G002047	Wax gourd	cpiwgoB161
CSPI02G25040	Cucsa.088240	Cucumber (Gy14) v1	cgycpiB093
CSPI02G25040	CmaCh15G000410	Cucurbita maxima (Rimu)	cmacpiB281
CSPI02G25040	CmoCh15G000410	Cucurbita moschata (Rifu)	cmocpiB271
CSPI02G25040	Cp4.1LG13g11660	Cucurbita pepo (Zucchini)	cpecpiB168
CSPI02G25040	CsGy2G024760	Cucumber (Gy14) v2	cgybcpiB057
CSPI02G25040	Carg22857	Silver-seed gourd	carcpiB1119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G25040	Cucurbita maxima (Rimu)	cmacpiB702
CSPI02G25040	Cucurbita moschata (Rifu)	cmocpiB695
CSPI02G25040	Watermelon (97103) v1	cpiwmB167
CSPI02G25040	Cucurbita pepo (Zucchini)	cpecpiB385
CSPI02G25040	Bottle gourd (USVL1VR-Ls)	cpilsiB113
CSPI02G25040	Silver-seed gourd	carcpiB0018