Cla97C11G215470 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C11G215470
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr11 : 12081906 .. 12086401 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCCAAACTTCTTATGTTCTTCAGCGTTTGCTGCTAACCTGCGCCGGAGGCATTTCGGCGACCCTTCTTACTGCCCTCCTCGCCCTGCCCGAGTTGATTGCTTCTTCTCAGGTGAAGTTATACCGCTCTTTTCCTTCTTCTCAATTCGTTAATCATCCTGTTTGGTCTGTTCATATTCTGTTTTCGAAATCACAATAATTCCTCGTCTTCTGTTCTTTACGACTTTCTTTACCTTTTGAATTTGTTATTACTTACAATACGAAAGACGACACATCTCCTCAGGATTATATTCATTAGGTTTAAATCCTATCTCCCCAGTTTTATTTTTTTATTTTTTTTTTATTTTTGACCTCTTAAAATGTATCTTTTAGTTTTTAAATTTTATTTATTTTTTTTTTTAATGAGGTAGGAGAATCTAATTTTTTATCCGTTTGGCTATGCTTATTTTAACAAATAAAAAATATTATATCAAGCATAAAACAACAAGTGTATAAGTTAATATTCAATTGCTTTTAAGAATATATATTCACACGTTAATACAAGCATCATTTCAAGTCAAATAAGTTAAAAGATGAATATCAGACAAAGTCGTGATTATTTTTTTTTTAGGATTTTAAAAATTCAAATAGATACTAAAAGTTTAGGTTAAAATATACCTTTGGTACCTATACTTTAGAGTTTGTTCAATTTTAGCCCAATGTCCAATTTTATTCCCTGAACTTTCAATAAATCTTAAATTTAGTCCTTATTACTTGTTTGTCGTGGATTTTTCACTACTTTTTATTTTTTTATTAAACATTTTTACTATAAATTTTGAAAATATATCCACATATTATGTTTCTTGCATGAGAATTATTATGATTATGTAATAAATTTCAATAAAAATTAACTTGGAGGGTCTATTGAAAATACAAGGATTAAAATTAGAAATTTAGAAATATAGAGACTAAAATTAAATAAATGATAAAATATACGGACCAAAATAATATTTTAACCAAAAGTTTATAAACTAAACATAAATCTTTTTAAAAGGTTGAAAGATAAAAACTTTGCATCCATTTTTGTGGAAATAATTATTTAATAAAAATGGATTTGTAGACTTATAATTATAATTTTAAAAATATTTGAAAATTAAAATAGTAAGATGAGGTTTAAAGCTTAATATTTGGAATTATTTAAAAGCAAAAGATTAAAGACTGAAACGGTGGTTACCAATAGAAAAGTAAAAATCATATATAAAAACTCTTGGAAGTTATAGTTTGTCATGAAAGATGAGATTCCCGAGACTTGTTGTCCTCTCATGTTTACACCTTTTTTCTTTCCATTTTTTATATCTCTTTTGCAAACGTTTTTTTTTTTTTTTTTTCATTCTAAATGTGGAAACTTTTAGAAAGATATAATAATTTTCCGCAATTTGTGTCATTTCTCAATTTTGTCTCCTCTTGCTGTTTAAAATATTCAATAATATTTGTCGGTCTTGTTCATTTATTTTTTAAATGAGTCCTTACCAAGAGTTGAAAATCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAATGTATATTTCGATCAATCTACATGTGGAAAAAAAAAATTCAAAATCAATAATGTAAAATAGATTTTTTTTTTCAAATTAAAATATAAGGTATTTTATACCAGATAAAATTAATTTTATATGACATCATCACTCTACCTATGAACTTTTAACTTAAAAAGATAGTAAAGAATTGATTGGAAAAAGAAAGGAATCAAGATATAAAGGATATGAAATTTATTTTTCCAAAAACAAAACAAAATTGAAAATTTTCACAAATATTATGAATCCAAATTACTTATGTGGCCTTTTTCTTTTTTAACTTGCGTATATATATGAACAAGAATTTAACTACACTTCAATTAAATTAAACTTGATAGAAAACTAATAATTATTTTTAAATTTAAGAAAAAATTAGATAAAAACATGTAAGCAATAAATGTAATTTTTTTTTTTTTTTTTTTGTGGTTCTTGAATACCATAATTTTTTTTAATAAAAAATTGGTACAGAGGTAGATTTTAGAATGTTAATACCTAAATTTATAGAGTCGAAAAATAATTTTATGCATGTATAAAGCAAATGGTAGCATGGTGTTCGTGCATACCAATATACATGAGATATTTGTATTGATAACTCAATCCCAGTGGCTTTAATGTTGAATGACCCAATTCTTGAAAACTAATGAAATCTAACTTTTTGTTTACGTTATAGCACCATTGCCTAATCGCGTTAAAGATATCTCACCCATCGCGAGAGGGTCAAAGTCCTAATGTGATTTTCATTTCTAAATATCGATTGGTCAACTGTTGATTTTTATTTTTCTAAAAAAAAGATCGGTTGAAATGAATATTGTGTTAGAGCTCCTATTTTTTTTTTTTGGTGATGGGAGGGACATCCCTAATGCAATAGTCACTATGACATCACCCTCATCATTGGGCCAACCTGGTCCTAAAAAGTGAAAGCCCAAGCCCAAAGGCCTATGACACTCTTTAGGCTTGGATTGGGCCAACCCAATCTTCAATAGGCAAGCCCATAGCTCAACCCTTGGGCTTTGCTCTTTGGATCAAACTTTGGTTGGACTTAGGCCGGCCCATTGGATTAATTCATTGAATATTAATTATTTAAATATTTAGAAATATATACGTATATTTTAGATTTTTTATGAAATGTTATTAAAATTTATTTTATATTTTTATTATTTTTTTAGATAAAATCATTGATATTATAAAATTTAATATTAGTGATTTAATTTTCTCATAAAGTTTTATTAGTTTTTTAATACTTTAAAAAATTATGTTAACTAAAAACTGCAATATATCTAAATATATTTTTAAAAAGAATTTTAAAAAATTTATTTTTTTAATATATATATAATATAAATATTGGAAAAACTACACGTATGCATATATATTTGGGTTGGTCCAACGTCGATTGGCGGTTGATCCAAATATAGCCCAAATGGGCTAGTTAGATTACCAAAATGATGATCTATATCCAATCCAATGAATGGGTTGGACTGGATTGGACCAGTCAAACGTTGACTTTTGGGCCAAGCTTATATTGAGCTTGGGTGGGCTTGGGCCAACCTTTGAGCTTTGGGCCCGTTGACATCAACAAAAAGTTAATTTTTATTCGTTGTTTAGGTTTGAGTCATTCTACATTAACACATCCAAAAATGGGTCATTAGTACAAAAGTATGTATTCTAAGCCTGACTCGTAAGTATTTTATGGACGATCTAATTCAAATTCTAGCAAGTTCATCTTAAACTTAAAAACCTAACATGTTAATTATTTTAATCTTTGTGATTAACGTGTCATGAAAAAGAAAGAATGATGACACAGTTTATTCTTTGTACACATTAATTTTATCAAACAATAATGGTATTAGTAAATGGTGATACACTGCAATTTTGTTGGCTCAACACGGCCTTCCTAGGCCTATTATGTTCACCCTTTTATCCTAACGCCCCTCCCCCCGCCATATTGGGCCATAAACAAAAGATTCCCTAAGCTGTATTAATAATTATGATTTTATGTGTGGACAATTTTCTAGTATCTTGTTCATTCGTAACAAAATTTTTTTTTGTGCAACGATGAAAAGATGTTTCTTTTCTTTTGAGATATACTATGTCACCAATAGAGTTATATGTAGGAAAATTATTTTAAAGAAAAAAAGTGCTGAAAATATTTACAACTAATAGCAAAACATAACGGTCTATCACAATAGACTACTATGTCTATCGTGACACAAATAATAGTCCGTCGTGATCTATCGCAGATAGACTAAGAAATTTTGTTACATTTGTAAATATTTTGGTTCCTTTTGCTATATTTGAAAATAGCCTTTATATGTATCTAACATATTTATATCTAACGATTTCCCACAAGGTGGCAACAAAAGTTGAATCACATTGCTTTTGGAAGTCATCCTAGTTCTACTTTGCCCCCTTTTTTGGTGATCATCTATAATTGCTCTTTCTAATGAACTATATCTTTGTGGCATGATTCAAATTGATTTCCCATCCAGTTCATGGATTCGAATAAGATGAATGCCATTGATGCATCCAACAACAAAAGAAAATCCAAGTCTAGGAAATGTCAGACAACAAAGCCTATTGATGGAGAAGAAAATGAAAACGAGAATAATGACAGTGATAATGAACTTGGAGAAGATCAAGAAGTGCTTGAAAATGGAGAAGAAGGAAAAAATGCTCCCACTAAAGATGGTGCCAATGGAGGAGAAGATGCTAGCAATGACAATGGCGACAATGGAAGTGAGAACAGTGGTGAGGGTGGTGATGACGACGAAGAAGATAATGATGATGGTGGGAGCGATGAGAATAATGAAGATAATAATGAAGACGAGGAAGATGTGGATGAAGAAGATGCAGAAGAAGACAACTTTGAAGAAGACGACGACGAAGAGACTCTTCCACCACCAAAGAAGAGAAAGAAGTAA

mRNA sequence

ATGGAACCCCAAACTTCTTATGTTCTTCAGCGTTTGCTGCTAACCTGCGCCGGAGGCATTTCGGCGACCCTTCTTACTGCCCTCCTCGCCCTGCCCGAGTTGATTGCTTCTTCTCAGTTCATGGATTCGAATAAGATGAATGCCATTGATGCATCCAACAACAAAAGAAAATCCAAGTCTAGGAAATGTCAGACAACAAAGCCTATTGATGGAGAAGAAAATGAAAACGAGAATAATGACAGTGATAATGAACTTGGAGAAGATCAAGAAGTGCTTGAAAATGGAGAAGAAGGAAAAAATGCTCCCACTAAAGATGGTGCCAATGGAGGAGAAGATGCTAGCAATGACAATGGCGACAATGGAAGTGAGAACAGTGGTGAGGGTGGTGATGACGACGAAGAAGATAATGATGATGGTGGGAGCGATGAGAATAATGAAGATAATAATGAAGACGAGGAAGATGTGGATGAAGAAGATGCAGAAGAAGACAACTTTGAAGAAGACGACGACGAAGAGACTCTTCCACCACCAAAGAAGAGAAAGAAGTAA

Coding sequence (CDS)

ATGGAACCCCAAACTTCTTATGTTCTTCAGCGTTTGCTGCTAACCTGCGCCGGAGGCATTTCGGCGACCCTTCTTACTGCCCTCCTCGCCCTGCCCGAGTTGATTGCTTCTTCTCAGTTCATGGATTCGAATAAGATGAATGCCATTGATGCATCCAACAACAAAAGAAAATCCAAGTCTAGGAAATGTCAGACAACAAAGCCTATTGATGGAGAAGAAAATGAAAACGAGAATAATGACAGTGATAATGAACTTGGAGAAGATCAAGAAGTGCTTGAAAATGGAGAAGAAGGAAAAAATGCTCCCACTAAAGATGGTGCCAATGGAGGAGAAGATGCTAGCAATGACAATGGCGACAATGGAAGTGAGAACAGTGGTGAGGGTGGTGATGACGACGAAGAAGATAATGATGATGGTGGGAGCGATGAGAATAATGAAGATAATAATGAAGACGAGGAAGATGTGGATGAAGAAGATGCAGAAGAAGACAACTTTGAAGAAGACGACGACGAAGAGACTCTTCCACCACCAAAGAAGAGAAAGAAGTAA

Protein sequence

MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKSRKCQTTKPIDGEENENENNDSDNELGEDQEVLENGEEGKNAPTKDGANGGEDASNDNGDNGSENSGEGGDDDEEDNDDGGSDENNEDNNEDEEDVDEEDAEEDNFEEDDDEETLPPPKKRKK

Homology

[Close]

BLAST of Cla97C11G215470 vs. NCBI nr
Match: XP_011649914.1 (PREDICTED: uncharacterized protein DDB_G0290685-like isoform X2 [Cucumis sativus] >KGN63111.1 hypothetical protein Csa_2G403660 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 9.1e-14
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME +T+ V QRLLLT AGGISATL    +AL EL+ASSQF+DSNKM+ IDAS+ KRKSKS
Sbjct: 1  MEIETASVHQRLLLTFAGGISATLF-GFVALAELLASSQFLDSNKMDVIDASDEKRKSKS 60

Query: 61 RKCQTTKPI 70
          RKCQTT+PI
Sbjct: 61 RKCQTTRPI 68

[Close]

BLAST of Cla97C11G215470 vs. NCBI nr
Match: XP_004138812.2 (PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 9.1e-14
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME +T+ V QRLLLT AGGISATL    +AL EL+ASSQF+DSNKM+ IDAS+ KRKSKS
Sbjct: 11 MEIETASVHQRLLLTFAGGISATLF-GFVALAELLASSQFLDSNKMDVIDASDEKRKSKS 70

Query: 61 RKCQTTKPI 70
          RKCQTT+PI
Sbjct: 71 RKCQTTRPI 78

[Close]

BLAST of Cla97C11G215470 vs. NCBI nr
Match: XP_008441238.1 (PREDICTED: uncharacterized protein DDB_G0290685-like [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 7.7e-13
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME + S V QRLLLT A GISATL    +AL EL+AS++F+DSNKM+ IDASN KRKSKS
Sbjct: 1  MEIENSSVHQRLLLTFAAGISATLF-GFVALAELLASTEFLDSNKMDVIDASNEKRKSKS 60

Query: 61 RKCQTTKPIDGE 73
          RKCQTT+  DGE
Sbjct: 61 RKCQTTRLTDGE 71

[Close]

BLAST of Cla97C11G215470 vs. NCBI nr
Match: XP_022939135.1 (uncharacterized protein DDB_G0290685-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME  TS + QRLLL CAG  SATLL  L+A+ EL+ASSQF+  N+M+AI   N KRK  S
Sbjct: 1  METATSSIHQRLLLACAGSTSATLL-GLVAMAELLASSQFLAPNEMDAIAVFNKKRKFTS 60

Query: 61 RKCQT 66
           K QT
Sbjct: 61 GKRQT 64

[Close]

BLAST of Cla97C11G215470 vs. NCBI nr
Match: XP_022939134.1 (uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME  TS + QRLLL CAG  SATLL  L+A+ EL+ASSQF+  N+M+AI   N KRK  S
Sbjct: 11 METATSSIHQRLLLACAGSTSATLL-GLVAMAELLASSQFLAPNEMDAIAVFNKKRKFTS 70

Query: 61 RKCQT 66
           K QT
Sbjct: 71 GKRQT 74

[Close]

BLAST of Cla97C11G215470 vs. TrEMBL
Match: tr|A0A0A0LSW9|A0A0A0LSW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403660 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.0e-14
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME +T+ V QRLLLT AGGISATL    +AL EL+ASSQF+DSNKM+ IDAS+ KRKSKS
Sbjct: 1  MEIETASVHQRLLLTFAGGISATLF-GFVALAELLASSQFLDSNKMDVIDASDEKRKSKS 60

Query: 61 RKCQTTKPI 70
          RKCQTT+PI
Sbjct: 61 RKCQTTRPI 68

[Close]

BLAST of Cla97C11G215470 vs. TrEMBL
Match: tr|A0A1S3B301|A0A1S3B301_CUCME (uncharacterized protein DDB_G0290685-like OS=Cucumis melo OX=3656 GN=LOC103485427 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MEPQTSYVLQRLLLTCAGGISATLLTALLALPELIASSQFMDSNKMNAIDASNNKRKSKS 60
          ME + S V QRLLLT A GISATL    +AL EL+AS++F+DSNKM+ IDASN KRKSKS
Sbjct: 1  MEIENSSVHQRLLLTFAAGISATLF-GFVALAELLASTEFLDSNKMDVIDASNEKRKSKS 60

Query: 61 RKCQTTKPIDGE 73
          RKCQTT+  DGE
Sbjct: 61 RKCQTTRLTDGE 71

The following BLAST results are available for this feature:

BLAST of Cla97C11G215470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649914.1	9.1e-14	72.46	PREDICTED: uncharacterized protein DDB_G0290685-like isoform X2 [Cucumis sativus...	[more]
XP_004138812.2	9.1e-14	72.46	PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus...	[more]
XP_008441238.1	7.7e-13	68.06	PREDICTED: uncharacterized protein DDB_G0290685-like [Cucumis melo]	[more]
XP_022939135.1	2.7e-05	58.46	uncharacterized protein DDB_G0290685-like isoform X2 [Cucurbita moschata]	[more]
XP_022939134.1	2.7e-05	58.46	uncharacterized protein DDB_G0290685-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Cla97C11G215470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSW9\|A0A0A0LSW9_CUCSA	6.0e-14	72.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G403660 PE=4 SV=1	[more]
tr\|A0A1S3B301\|A0A1S3B301_CUCME	5.1e-13	68.06	uncharacterized protein DDB_G0290685-like OS=Cucumis melo OX=3656 GN=LOC10348542...	[more]

BLAST of Cla97C11G215470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C11G215470 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G215470.1	Cla97C11G215470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 148..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C11G215470	Csa2G403660	Cucumber (Chinese Long) v2	cuwmbB104
Cla97C11G215470	MELO3C008129	Melon (DHL92) v3.5.1	mewmbB279
Cla97C11G215470	ClCG11G008040	Watermelon (Charleston Gray)	wcgwmbB067
Cla97C11G215470	CSPI02G25040	Wild cucumber (PI 183967)	cpiwmbB106
Cla97C11G215470	Cucsa.088240	Cucumber (Gy14) v1	cgywmbB097
Cla97C11G215470	CmaCh15G000410	Cucurbita maxima (Rimu)	cmawmbB295
Cla97C11G215470	CmoCh15G000410	Cucurbita moschata (Rifu)	cmowmbB276
Cla97C11G215470	Lsi03G004510	Bottle gourd (USVL1VR-Ls)	lsiwmbB224
Cla97C11G215470	CsGy2G024760	Cucumber (Gy14) v2	cgybwmbB099
Cla97C11G215470	MELO3C008129.2	Melon (DHL92) v3.6.1	medwmbB264
Cla97C11G215470	Carg22857	Silver-seed gourd	carwmbB1138
Cla97C11G215470	CsaV3_2G033560	Cucumber (Chinese Long) v3	cucwmbB109
Cla97C11G215470	Bhi04G002047	Wax gourd	wgowmbB293

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C11G215470	Silver-seed gourd	carwmbB0017
Cla97C11G215470	Cucurbita maxima (Rimu)	cmawmbB736
Cla97C11G215470	Cucurbita moschata (Rifu)	cmowmbB708
Cla97C11G215470	Watermelon (97103) v1	wmwmbB363