Lsi03G004510 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G004510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 5111724 .. 5112146 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCCATTGATGCATCCAACGAAAAAAGGAAACCCAAGTCTAGGAGATGTCAAACGACAAAGCCGATTGATGGAGAAGAAAATGAAAATGAGAATAACGATAGTGATAACGAACTTGGAGAAGATCAAGAAGTGCTTGAAAATGGAGAGGAAGAAGGTAAAAATGCTCCCACTAAAGATGGTGCTAATGGAGGAGAAGATGCTAGCAATGATAACGGCGATGGTGGAAGTGAGAATAGTGGTGAGGGTGGTGATGACGACGAAGAAGATAATGATGATGGTGGAAGCGATAAAAACAATGAAGATAATAATGAAGATGAGGAAGACGTGGATGAAGAAGATGCCGAGGAAGACAACTTTGAAGAAGAAGACGATGATGATGAAGAAACCCTTCCACCACCAAAGAAGAGAAAGAAGTAA

mRNA sequence

ATGTATGCCATTGATGCATCCAACGAAAAAAGGAAACCCAAGTCTAGGAGATGTCAAACGACAAAGCCGATTGATGGAGAAGAAAATGAAAATGAGAATAACGATAGTGATAACGAACTTGGAGAAGATCAAGAAGTGCTTGAAAATGGAGAGGAAGAAGGTAAAAATGCTCCCACTAAAGATGGTGCTAATGGAGGAGAAGATGCTAGCAATGATAACGGCGATGGTGGAAGTGAGAATAGTGGTGAGGGTGGTGATGACGACGAAGAAGATAATGATGATGGTGGAAGCGATAAAAACAATGAAGATAATAATGAAGATGAGGAAGACGTGGATGAAGAAGATGCCGAGGAAGACAACTTTGAAGAAGAAGACGATGATGATGAAGAAACCCTTCCACCACCAAAGAAGAGAAAGAAGTAA

Coding sequence (CDS)

ATGTATGCCATTGATGCATCCAACGAAAAAAGGAAACCCAAGTCTAGGAGATGTCAAACGACAAAGCCGATTGATGGAGAAGAAAATGAAAATGAGAATAACGATAGTGATAACGAACTTGGAGAAGATCAAGAAGTGCTTGAAAATGGAGAGGAAGAAGGTAAAAATGCTCCCACTAAAGATGGTGCTAATGGAGGAGAAGATGCTAGCAATGATAACGGCGATGGTGGAAGTGAGAATAGTGGTGAGGGTGGTGATGACGACGAAGAAGATAATGATGATGGTGGAAGCGATAAAAACAATGAAGATAATAATGAAGATGAGGAAGACGTGGATGAAGAAGATGCCGAGGAAGACAACTTTGAAGAAGAAGACGATGATGATGAAGAAACCCTTCCACCACCAAAGAAGAGAAAGAAGTAA

Protein sequence

MYAIDASNEKRKPKSRRCQTTKPIDGEENENENNDSDNELGEDQEVLENGEEEGKNAPTKDGANGGEDASNDNGDGGSENSGEGGDDDEEDNDDGGSDKNNEDNNEDEEDVDEEDAEEDNFEEEDDDDEETLPPPKKRKK

Homology

[Close]

BLAST of Lsi03G004510 vs. TrEMBL
Match: A0A0A0LSW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G403660 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.0e-41
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = 1


Query: 1   MYAIDASNEKRKPKSRRCQTTKPIDGEENENENNDSDNELGEDQEVLENGEEEGKNA-PT 60
           M  IDAS+EKRK KSR+CQTT+PI+GEENENENNDSDNELGEDQ+V ENG EEGKNA PT
Sbjct: 45  MDVIDASDEKRKSKSRKCQTTRPIEGEENENENNDSDNELGEDQDVHENG-EEGKNAPPT 104

Query: 61  KDGAN-GGEDASNDNGDGGSENSGEGGDDDEEDNDDGGSDKNNEDNNEDEEDVDEEDAEE 120
           KDGAN GGED SNDNGDGGSENSGEGGD++EE+NDDGGSD+NNEDNNED++DVDEEDAEE
Sbjct: 105 KDGANGGGEDGSNDNGDGGSENSGEGGDEEEEENDDGGSDENNEDNNEDDDDVDEEDAEE 164

Query: 121 DNFEEEDDDDEETLPPPKKRKK 141
           DNFE E +DDEETLPPPKKRKK
Sbjct: 165 DNFEGE-EDDEETLPPPKKRKK 184

[Close]

BLAST of Lsi03G004510 vs. NCBI nr
Match: gi|659081260|ref|XP_008441238.1| (PREDICTED: uncharacterized protein DDB_G0290685-like [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 9.1e-42
Identity = 119/140 (85.00%), Postives = 128/140 (91.43%), Query Frame = 1


Query: 1   MYAIDASNEKRKPKSRRCQTTKPIDGEENENENNDSDNELGEDQEVLENGEEEGKNAPTK 60
           M  IDASNEKRK KSR+CQTT+  DGEENENENNDSDNELG+ Q+V ENGEEEGKNAPTK
Sbjct: 45  MDVIDASNEKRKSKSRKCQTTRLTDGEENENENNDSDNELGDGQDVHENGEEEGKNAPTK 104

Query: 61  DGANGGEDASNDNGDGGSENSGEGGDDDEEDNDDGGSDKNNEDNNEDEEDVDEEDAEEDN 120
           DGANG ED SNDNGDGGSENSGEGG DDEE+NDDGGSD+NNEDNNED++DVDEEDAEEDN
Sbjct: 105 DGANGEEDGSNDNGDGGSENSGEGG-DDEEENDDGGSDENNEDNNEDDDDVDEEDAEEDN 164

Query: 121 FEEEDDDDEETLPPPKKRKK 141
           FE E +DDEETLPPPKKRKK
Sbjct: 165 FEGE-EDDEETLPPPKKRKK 182

[Close]

BLAST of Lsi03G004510 vs. NCBI nr
Match: gi|778673026|ref|XP_011649914.1| (PREDICTED: uncharacterized protein DDB_G0290685-like isoform X2 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.0e-40
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = 1


Query: 1   MYAIDASNEKRKPKSRRCQTTKPIDGEENENENNDSDNELGEDQEVLENGEEEGKNA-PT 60
           M  IDAS+EKRK KSR+CQTT+PI+GEENENENNDSDNELGEDQ+V ENG EEGKNA PT
Sbjct: 45  MDVIDASDEKRKSKSRKCQTTRPIEGEENENENNDSDNELGEDQDVHENG-EEGKNAPPT 104

Query: 61  KDGAN-GGEDASNDNGDGGSENSGEGGDDDEEDNDDGGSDKNNEDNNEDEEDVDEEDAEE 120
           KDGAN GGED SNDNGDGGSENSGEGGD++EE+NDDGGSD+NNEDNNED++DVDEEDAEE
Sbjct: 105 KDGANGGGEDGSNDNGDGGSENSGEGGDEEEEENDDGGSDENNEDNNEDDDDVDEEDAEE 164

Query: 121 DNFEEEDDDDEETLPPPKKRKK 141
           DNFE E +DDEETLPPPKKRKK
Sbjct: 165 DNFEGE-EDDEETLPPPKKRKK 184

[Close]

BLAST of Lsi03G004510 vs. NCBI nr
Match: gi|778673023|ref|XP_004138812.2| (PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.0e-40
Identity = 120/142 (84.51%), Postives = 132/142 (92.96%), Query Frame = 1


Query: 1   MYAIDASNEKRKPKSRRCQTTKPIDGEENENENNDSDNELGEDQEVLENGEEEGKNA-PT 60
           M  IDAS+EKRK KSR+CQTT+PI+GEENENENNDSDNELGEDQ+V ENG EEGKNA PT
Sbjct: 55  MDVIDASDEKRKSKSRKCQTTRPIEGEENENENNDSDNELGEDQDVHENG-EEGKNAPPT 114

Query: 61  KDGAN-GGEDASNDNGDGGSENSGEGGDDDEEDNDDGGSDKNNEDNNEDEEDVDEEDAEE 120
           KDGAN GGED SNDNGDGGSENSGEGGD++EE+NDDGGSD+NNEDNNED++DVDEEDAEE
Sbjct: 115 KDGANGGGEDGSNDNGDGGSENSGEGGDEEEEENDDGGSDENNEDNNEDDDDVDEEDAEE 174

Query: 121 DNFEEEDDDDEETLPPPKKRKK 141
           DNFE E +DDEETLPPPKKRKK
Sbjct: 175 DNFEGE-EDDEETLPPPKKRKK 194

The following BLAST results are available for this feature:

BLAST of Lsi03G004510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G004510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW9_CUCSA	7.0e-41	84.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G403660 PE=4 SV=1	[more]

BLAST of Lsi03G004510 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G004510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081260\|ref\|XP_008441238.1\|	9.1e-42	85.00	PREDICTED: uncharacterized protein DDB_G0290685-like [Cucumis melo]	[more]
gi\|778673026\|ref\|XP_011649914.1\|	1.0e-40	84.51	PREDICTED: uncharacterized protein DDB_G0290685-like isoform X2 [Cucumis sativus...	[more]
gi\|778673023\|ref\|XP_004138812.2\|	1.0e-40	84.51	PREDICTED: uncharacterized protein DDB_G0290685-like isoform X1 [Cucumis sativus...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G004510.1	Lsi03G004510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 104..124 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G004510	Cla97C11G215470	Watermelon (97103) v2	lsiwmbB224
Lsi03G004510	Carg22857	Silver-seed gourd	carlsiB986
Lsi03G004510	CsaV3_2G033560	Cucumber (Chinese Long) v3	cuclsiB127

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G004510	Cucumber (Gy14) v1	cgylsiB098
Lsi03G004510	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G004510	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G004510	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G004510	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G004510	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G004510	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G004510	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G004510	Cucumber (Chinese Long) v2	culsiB115
Lsi03G004510	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G004510	Watermelon (Charleston Gray)	lsiwcgB227
Lsi03G004510	Watermelon (97103) v1	lsiwmB275
Lsi03G004510	Cucumber (Gy14) v2	cgyblsiB102
Lsi03G004510	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G004510	Silver-seed gourd	carlsiB017
Lsi03G004510	Wax gourd	lsiwgoB322