Carg19647 (gene) Silver-seed gourd

Overview
NameCarg19647
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEthylene-responsive transcription factor
LocationCucurbita_argyrosperma_scaffold_117 : 420096 .. 420781 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTCATTTCATTCTCTCCCTCACTCCATCAACATGTGCGGCGGCGCTATCATCTCCGATCCCGTCGTCGACACCACCTTCTCCGACCTCCTCGGCCTCGACCACGACCTCTCCGCCAATTCTTCACACCCCTCTCAAGGTACACTACTCCCTCTCTGTTTCTTCAATTCAATTCAATTCAATTATTGGGTTATTTTCTTAATCTTTGATTCTTATTATGTTAGTCAAAATTGAGAACCCCGACGGCTGTGAAGAAGCAGCGCCGGCGGCGGCGGCGGCGGAGGGAGTGGCCGGTGACGTGAAGAAGCCTAAAAAAATTCGCAAAACCAAATACAGAGGAATCCGGCAGCGGCCGTGGGGAAAATGGGCCGCCGAGATTCGAGACCCACAAAAGGGCCTCCGTGTTTGGCTCGGTACCTACAACACCGCCGAAGAAGCTGCCATAGCTTACGACCAAGCCGCCGTAAGAATCAGAGGCAAAAAGGCCAAACTCAACTTCACTCACCCACCGCCGCCACCACCGCCGCCACCACCGCCGCCGCAACAACATCTCCCACCAAACAACATCCAACCCACCTTGGAATCATTTCTGGGTCTCTACCCCTTGCCCCCGGTGGAGCCCTCGGCAGACCCCTGGTGGGTCGATGATCTTCTCATATATCAACAACAAAATTTTCAACTCTAA

mRNA sequence

CCTTTCATTTCATTCTCTCCCTCACTCCATCAACATGTGCGGCGGCGCTATCATCTCCGATCCCGTCGTCGACACCACCTTCTCCGACCTCCTCGGCCTCGACCACGACCTCTCCGCCAATTCTTCACACCCCTCTCAAGTCAAAATTGAGAACCCCGACGGCTGTGAAGAAGCAGCGCCGGCGGCGGCGGCGGCGGAGGGAGTGGCCGGTGACGTGAAGAAGCCTAAAAAAATTCGCAAAACCAAATACAGAGGAATCCGGCAGCGGCCGTGGGGAAAATGGGCCGCCGAGATTCGAGACCCACAAAAGGGCCTCCGTGTTTGGCTCGGTACCTACAACACCGCCGAAGAAGCTGCCATAGCTTACGACCAAGCCGCCGTAAGAATCAGAGGCAAAAAGGCCAAACTCAACTTCACTCACCCACCGCCGCCACCACCGCCGCCACCACCGCCGCCGCAACAACATCTCCCACCAAACAACATCCAACCCACCTTGGAATCATTTCTGGGTCTCTACCCCTTGCCCCCGGTGGAGCCCTCGGCAGACCCCTGGTGGGTCGATGATCTTCTCATATATCAACAACAAAATTTTCAACTCTAA

Coding sequence (CDS)

ATGTGCGGCGGCGCTATCATCTCCGATCCCGTCGTCGACACCACCTTCTCCGACCTCCTCGGCCTCGACCACGACCTCTCCGCCAATTCTTCACACCCCTCTCAAGTCAAAATTGAGAACCCCGACGGCTGTGAAGAAGCAGCGCCGGCGGCGGCGGCGGCGGAGGGAGTGGCCGGTGACGTGAAGAAGCCTAAAAAAATTCGCAAAACCAAATACAGAGGAATCCGGCAGCGGCCGTGGGGAAAATGGGCCGCCGAGATTCGAGACCCACAAAAGGGCCTCCGTGTTTGGCTCGGTACCTACAACACCGCCGAAGAAGCTGCCATAGCTTACGACCAAGCCGCCGTAAGAATCAGAGGCAAAAAGGCCAAACTCAACTTCACTCACCCACCGCCGCCACCACCGCCGCCACCACCGCCGCCGCAACAACATCTCCCACCAAACAACATCCAACCCACCTTGGAATCATTTCTGGGTCTCTACCCCTTGCCCCCGGTGGAGCCCTCGGCAGACCCCTGGTGGGTCGATGATCTTCTCATATATCAACAACAAAATTTTCAACTCTAA

Protein sequence

MCGGAIISDPVVDTTFSDLLGLDHDLSANSSHPSQVKIENPDGCEEAAPAAAAAEGVAGDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRGKKAKLNFTHPPPPPPPPPPPPQQHLPPNNIQPTLESFLGLYPLPPVEPSADPWWVDDLLIYQQQNFQL
Homology
[Close]
BLAST of Carg19647 vs. NCBI nr
Match: XP_022955821.1 (ethylene-responsive transcription factor ERF071-like [Cucurbita moschata])

HSP 1 Score: 317.8 bits (813), Expect = 2.5e-83
Identity = 180/189 (95.24%), Postives = 182/189 (96.30%), Query Frame = 0 

Query: 1   MCGGAIISDPVVDTTFSDLLGLDHDLSANSSHPSQVKIENPDGCEEAAPAAAAAEGVAGD 60
           MCGGAIISDPVVD TFSDLLGLDHDLSANSSHPSQVKIENPDGCEEAAPA A AE VAG+
Sbjct: 1   MCGGAIISDPVVDPTFSDLLGLDHDLSANSSHPSQVKIENPDGCEEAAPAPAPAEEVAGE 60

Query: 61  VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRG 120
           VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAA AYDQAAVRIRG
Sbjct: 61  VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAATAYDQAAVRIRG 120

Query: 121 KKAKLNFTH-XXXXXXXXXXXXXXXXXXXXIQPTLESFLGLYPLPPVEPSADPWWVDDLL 180
           KKAKLNFTH XXXXXXXXXXXXXXXXXXXXIQPTLESFLGLYP PPVEPSADPWWVDDL+
Sbjct: 121 KKAKLNFTHXXXXXXXXXXXXXXXXXXXXXIQPTLESFLGLYPSPPVEPSADPWWVDDLI 180

Query: 181 IYQQQNFQL 189
           IYQQQNFQL
Sbjct: 181 IYQQQNFQL 189

[Close]
BLAST of Carg19647 vs. NCBI nr
Match: XP_023526721.1 (ethylene-responsive transcription factor ERF071-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.8 bits (813), Expect = 2.5e-83
Identity = 177/188 (94.15%), Postives = 181/188 (96.28%), Query Frame = 0 

Query: 1   MCGGAIISDPVVDTTFSDLLGLDHDLSANSSHPSQVKIENPDGCEEAAPAAAAAEGVAGD 60
           MCGGAIISDPVVDTTFSDLLGLDH+LSANSSHPSQVKIE+PDGCEEA  AAAAAEG+AG+
Sbjct: 1   MCGGAIISDPVVDTTFSDLLGLDHNLSANSSHPSQVKIESPDGCEEAPAAAAAAEGLAGE 60

Query: 61  VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRG 120
           VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRG
Sbjct: 61  VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRG 120

Query: 121 KKAKLNFTHXXXXXXXXXXXXXXXXXXXXIQPTLESFLGLYPLPPVEPSADPWWVDDLLI 180
           KKAKLNFTH   XXXXXXXXXXXXXXXXXIQPTLES LGLYP PPVEPSADPWWVDDLLI
Sbjct: 121 KKAKLNFTH---XXXXXXXXXXXXXXXXXIQPTLESILGLYPSPPVEPSADPWWVDDLLI 180

Query: 181 YQQQNFQL 189
           YQQQNFQL
Sbjct: 181 YQQQNFQL 185

[Close]
BLAST of Carg19647 vs. NCBI nr
Match: XP_022979943.1 (ethylene-responsive transcription factor ERF071-like [Cucurbita maxima])

HSP 1 Score: 303.1 bits (775), Expect = 6.4e-79
Identity = 164/188 (87.23%), Postives = 167/188 (88.83%), Query Frame = 0 

Query: 1   MCGGAIISDPVVDTTFSDLLGLDHDLSANSSHPSQVKIENPDGCEEAAPAAAAAEGVAGD 60
           MCGGAIISDPVVDTTFSDLLGL  DLSANSSHPSQVKIENP+GCEE APAAAA EGVAG+
Sbjct: 1   MCGGAIISDPVVDTTFSDLLGLGLDLSANSSHPSQVKIENPNGCEE-APAAAATEGVAGE 60

Query: 61  VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRG 120
           VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRG
Sbjct: 61  VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRG 120

Query: 121 KKAKLNFTHXXXXXXXXXXXXXXXXXXXXIQPTLESFLGLYPLPPVEPSADPWWVDDLLI 180
           KKAKLNF H        XXXXXXX     I+PTLESFLGLYP P VEPSAD WWVDDLLI
Sbjct: 121 KKAKLNFPH-------PXXXXXXXLPPNNIEPTLESFLGLYPSPSVEPSADLWWVDDLLI 180

Query: 181 YQQQNFQL 189
           YQQQNFQL
Sbjct: 181 YQQQNFQL 180

[Close]
BLAST of Carg19647 vs. NCBI nr
Match: XP_022137925.1 (ethylene-responsive transcription factor RAP2-3-like [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 9.4e-46
Identity = 130/218 (59.63%), Postives = 142/218 (65.14%), Query Frame = 0 

Query: 1   MCGGAIISD---------PVVD-------TTFSDLLGLD----------HDLSANSSHPS 60
           MCGGAIISD         PVVD        TFS+LLGLD             + N    S
Sbjct: 1   MCGGAIISDFVDTTCHQSPVVDDNLWPEFDTFSELLGLDASTGNYLFNNSPTNNNLQQHS 60

Query: 61  QVKIENPDGCEEAAPAAAAAEGVAGDVKK---PKKIRKTKYRGIRQRPWGKWAAEIRDPQ 120
            VK E  + CEEA      AE VA ++KK    +++RK+KYRGIRQRPWGKWAAEIRDPQ
Sbjct: 61  HVKSEKKEECEEA--GGEVAEAVAEEMKKRPQKQRVRKSKYRGIRQRPWGKWAAEIRDPQ 120

Query: 121 KGLRVWLGTYNTAEEAAIAYDQAAVRIRGKKAKLNFTHXXXXXXXXXXXXXXXXXXXXIQ 180
           KGLRVWLGT+NTAEEAA AYDQAA+RIRGKKAKLNFTHXXXXXXXXXXX           
Sbjct: 121 KGLRVWLGTFNTAEEAAAAYDQAAIRIRGKKAKLNFTHXXXXXXXXXXXQL--------- 180

Query: 181 PTLESFLGLYPL-PPVEPSADPWWVDDLLIYQQQNFQL 189
            +LESFLGL P  PPVEP AD WW DDLL Y  QN  L
Sbjct: 181 SSLESFLGLDPSPPPVEPMADLWWADDLLTYHHQNLPL 207

[Close]
BLAST of Carg19647 vs. NCBI nr
Match: XP_004134228.1 (PREDICTED: ethylene-responsive transcription factor RAP2-3-like [Cucumis sativus] >KGN57139.1 hypothetical protein Csa_3G164580 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 116/225 (51.56%), Postives = 129/225 (57.33%), Query Frame = 0 

Query: 1   MCGGAIISD--------------PVVDTTFSDLLGLDHDLSA------NSSHPSQVKIEN 60
           MCGGAIISD              P +DTTFSDLLGLD           N++ P+ V    
Sbjct: 1   MCGGAIISDYVEPNPVVVDNLLWPDLDTTFSDLLGLDLITQTQNYPFNNTTSPNVVDNNI 60

Query: 61  PDGCEEAAPAAAAAEGVA-GDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLG 120
           P    +          V  G++KKP+K+RK+KYRGIRQRPWGKWAAEIRDP+KGLRVWLG
Sbjct: 61  PKQLSQVKKEKVEGNEVGRGEMKKPQKVRKSKYRGIRQRPWGKWAAEIRDPRKGLRVWLG 120

Query: 121 TYNTAEEAAIAYDQAAVRIRGKKAKLNFTHXXXXXXXXXXXXXXXXXXXXIQ-------- 180
           TYNT EEAA AYDQAA+RIRGKKAKLNF                       Q        
Sbjct: 121 TYNTPEEAARAYDQAAIRIRGKKAKLNFPPPLPSPPLLSVPLSLPPSPPQQQLPTTSTPI 180

Query: 181 --------PTLESFLGLYPLPPVEPSADPWWVDDLLIYQQQNFQL 189
                    TLESFLGL P PPVEP+AD WWVDDLL  QQQN QL
Sbjct: 181 DVELKHQISTLESFLGLDPSPPVEPTADLWWVDDLLACQQQNLQL 225

[Close]
BLAST of Carg19647 vs. TAIR10
Match: AT2G47520.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-25
Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 0 

Query: 1   MCGGAIISDPVVDTTFSDLLGLDHDLSANSSHPSQVKIENPDGCEEAAPAAAAAEGVAGD 60
           MCGGAIISD +               S + S PSQ  + +    ++  P + + E     
Sbjct: 1   MCGGAIISDFI--------------WSKSESEPSQ--LGSVSSRKKRKPVSVSEE----- 60

Query: 61  VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRG 120
            +  K+ RK  YRGIRQRPWGKWAAEIRDP KG+RVWLGT+ TA+EAA AYD AA++IRG
Sbjct: 61  -RDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRG 105

Query: 121 KKAKLNF 128
           +KAKLNF
Sbjct: 121 RKAKLNF 105

[Close]
BLAST of Carg19647 vs. TAIR10
Match: AT3G16770.1 (ethylene-responsive element binding protein)

HSP 1 Score: 112.1 bits (279), Expect = 3.8e-25
Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 0 

Query: 1   MCGGAIISD--PVV----------DTTFSDLLGLDHD-----LSANSSHP-SQVKIENPD 60
           MCGGAIISD  P+V          +  +S+L     D      S +  HP +QV ++   
Sbjct: 1   MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVK--- 60

Query: 61  GCEEAAPAAAAAEGVAGDVKKPKKIRKTK--YRGIRQRPWGKWAAEIRDPQKGLRVWLGT 120
             EEA     A E        P K RK K  YRGIR+RPWGKWAAEIRDP+KG+RVWLGT
Sbjct: 61  --EEAVKKEQATE--------PGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGT 120

Query: 121 YNTAEEAAIAYDQAAVRIRGKKAKLNF 128
           +NTAEEAA+AYD AA +IRG KAKLNF
Sbjct: 121 FNTAEEAAMAYDVAAKQIRGDKAKLNF 134

[Close]
BLAST of Carg19647 vs. TAIR10
Match: AT1G53910.1 (related to AP2 12)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-23
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 0 

Query: 56  GVAGDVKK-PKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQA 115
           G+ GD +K   + RK +YRGIRQRPWGKWAAEIRDP++G R+WLGT+ TAEEAA AYD A
Sbjct: 108 GLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAA 167

Query: 116 AVRIRGKKAKLNF 128
           A RIRG KAK+NF
Sbjct: 168 ARRIRGSKAKVNF 180

[Close]
BLAST of Carg19647 vs. TAIR10
Match: AT1G72360.2 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-23
Identity = 63/131 (48.09%), Postives = 78/131 (59.54%), Query Frame = 0 

Query: 1   MCGGAIISDPVVDTTFSDLLGLDHDLSANSSHPSQVKIE-NPDGCEEAAP---AAAAAEG 60
           MCGGA+ISD +     +   G     S      S    + N D  E   P   ++     
Sbjct: 1   MCGGAVISDYIAPEKIARSSGKSSWRSNGVFDCSIYDFDGNFDELESDEPFVFSSTHKHH 60

Query: 61  VAGDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAV 120
            +G     KK + ++Y+GIR+RPWG+WAAEIRDP KG+RVWLGT+NTAEEAA AYD  A 
Sbjct: 61  ASGSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAK 120

Query: 121 RIRGKKAKLNF 128
           RIRG KAKLNF
Sbjct: 121 RIRGAKAKLNF 131

[Close]
BLAST of Carg19647 vs. TAIR10
Match: AT3G14230.1 (related to AP2 2)

HSP 1 Score: 104.4 bits (259), Expect = 7.9e-23
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 47  AAPAAAAAEGVAGDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEE 106
           +A A    E      K  K+ RK +YRGIRQRPWGKWAAEIRDP+KG R WLGT++TAEE
Sbjct: 103 SAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEE 162

Query: 107 AAIAYDQAAVRIRGKKAKLNF 128
           AA AYD AA RIRG KAK+NF
Sbjct: 163 AARAYDAAARRIRGTKAKVNF 183

[Close]
BLAST of Carg19647 vs. Swiss-Prot
Match: sp|O22259|ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana OX=3702 GN=ERF071 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.1e-24
Identity = 65/127 (51.18%), Postives = 81/127 (63.78%), Query Frame = 0 

Query: 1   MCGGAIISDPVVDTTFSDLLGLDHDLSANSSHPSQVKIENPDGCEEAAPAAAAAEGVAGD 60
           MCGGAIISD +               S + S PSQ  + +    ++  P + + E     
Sbjct: 1   MCGGAIISDFI--------------WSKSESEPSQ--LGSVSSRKKRKPVSVSEE----- 60

Query: 61  VKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRG 120
            +  K+ RK  YRGIRQRPWGKWAAEIRDP KG+RVWLGT+ TA+EAA AYD AA++IRG
Sbjct: 61  -RDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRG 105

Query: 121 KKAKLNF 128
           +KAKLNF
Sbjct: 121 RKAKLNF 105

[Close]
BLAST of Carg19647 vs. Swiss-Prot
Match: sp|P42736|RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana OX=3702 GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 6.9e-24
Identity = 76/147 (51.70%), Postives = 90/147 (61.22%), Query Frame = 0 

Query: 1   MCGGAIISD--PVV----------DTTFSDLLGLDHD-----LSANSSHP-SQVKIENPD 60
           MCGGAIISD  P+V          +  +S+L     D      S +  HP +QV ++   
Sbjct: 1   MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVK--- 60

Query: 61  GCEEAAPAAAAAEGVAGDVKKPKKIRKTK--YRGIRQRPWGKWAAEIRDPQKGLRVWLGT 120
             EEA     A E        P K RK K  YRGIR+RPWGKWAAEIRDP+KG+RVWLGT
Sbjct: 61  --EEAVKKEQATE--------PGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGT 120

Query: 121 YNTAEEAAIAYDQAAVRIRGKKAKLNF 128
           +NTAEEAA+AYD AA +IRG KAKLNF
Sbjct: 121 FNTAEEAAMAYDVAAKQIRGDKAKLNF 134

[Close]
BLAST of Carg19647 vs. Swiss-Prot
Match: sp|Q6K7E6|ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.9e-23
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 62  KKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQAAVRIRGK 121
           K  K+ RK ++RGIRQRPWGKWAAEIRDP+KG+RVWLGT+N+AEEAA AYD  A RIRGK
Sbjct: 110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGK 169

Query: 122 KAKLNF 128
           KAK+NF
Sbjct: 170 KAKVNF 175

[Close]
BLAST of Carg19647 vs. Swiss-Prot
Match: sp|Q9SSA8|RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana OX=3702 GN=RAP2-12 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.9e-22
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 0 

Query: 56  GVAGDVKK-PKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEEAAIAYDQA 115
           G+ GD +K   + RK +YRGIRQRPWGKWAAEIRDP++G R+WLGT+ TAEEAA AYD A
Sbjct: 108 GLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAA 167

Query: 116 AVRIRGKKAKLNF 128
           A RIRG KAK+NF
Sbjct: 168 ARRIRGSKAKVNF 180

[Close]
BLAST of Carg19647 vs. Swiss-Prot
Match: sp|Q9LUM4|RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana OX=3702 GN=RAP2-2 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0 

Query: 47  AAPAAAAAEGVAGDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAEE 106
           +A A    E      K  K+ RK +YRGIRQRPWGKWAAEIRDP+KG R WLGT++TAEE
Sbjct: 103 SAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEE 162

Query: 107 AAIAYDQAAVRIRGKKAKLNF 128
           AA AYD AA RIRG KAK+NF
Sbjct: 163 AARAYDAAARRIRGTKAKVNF 183

[Close]
BLAST of Carg19647 vs. TrEMBL
Match: tr|A0A0A0L7Z6|A0A0A0L7Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164580 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 116/225 (51.56%), Postives = 129/225 (57.33%), Query Frame = 0 

Query: 1   MCGGAIISD--------------PVVDTTFSDLLGLDHDLSA------NSSHPSQVKIEN 60
           MCGGAIISD              P +DTTFSDLLGLD           N++ P+ V    
Sbjct: 1   MCGGAIISDYVEPNPVVVDNLLWPDLDTTFSDLLGLDLITQTQNYPFNNTTSPNVVDNNI 60

Query: 61  PDGCEEAAPAAAAAEGVA-GDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLG 120
           P    +          V  G++KKP+K+RK+KYRGIRQRPWGKWAAEIRDP+KGLRVWLG
Sbjct: 61  PKQLSQVKKEKVEGNEVGRGEMKKPQKVRKSKYRGIRQRPWGKWAAEIRDPRKGLRVWLG 120

Query: 121 TYNTAEEAAIAYDQAAVRIRGKKAKLNFTHXXXXXXXXXXXXXXXXXXXXIQ-------- 180
           TYNT EEAA AYDQAA+RIRGKKAKLNF                       Q        
Sbjct: 121 TYNTPEEAARAYDQAAIRIRGKKAKLNFPPPLPSPPLLSVPLSLPPSPPQQQLPTTSTPI 180

Query: 181 --------PTLESFLGLYPLPPVEPSADPWWVDDLLIYQQQNFQL 189
                    TLESFLGL P PPVEP+AD WWVDDLL  QQQN QL
Sbjct: 181 DVELKHQISTLESFLGLDPSPPVEPTADLWWVDDLLACQQQNLQL 225

[Close]
BLAST of Carg19647 vs. TrEMBL
Match: tr|A0A1S3AY54|A0A1S3AY54_CUCME (ethylene-responsive transcription factor RAP2-3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483869 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.9e-39
Identity = 129/228 (56.58%), Postives = 142/228 (62.28%), Query Frame = 0 

Query: 1   MCGGAIISD--------------PVVDTT-FSDLLGLD----HDLSANSSHPSQVKIEN- 60
           MCGGAIISD              P +DTT FSDLLGLD     +   N++ PS   + N 
Sbjct: 1   MCGGAIISDYVEPNPVVVDNLLWPDLDTTLFSDLLGLDLSGTQNYLFNNTTPSANVVHNI 60

Query: 61  PDGCEEAAPAAAAA-EGVAGDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLG 120
           P    +         EG   ++KKP+K+RK+KYRGIRQRPWGKWAAEIRDPQKGLRVWLG
Sbjct: 61  PKQLSQVKKERVEGNEGATSEMKKPQKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLG 120

Query: 121 TYNTAEEAAIAYDQAAVRIRGKKAKLNFTHXXXXXXXXXXXXXXXXXXXXIQ-------- 180
           TYNTAEEAA AYDQAA+R            XXXXXXXXXXXXXXXXXXXX          
Sbjct: 121 TYNTAEEAARAYDQAAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSA 180

Query: 181 -----------PTLESFLGLYPLPPVEPSADPWWVDDLLIYQQQNFQL 189
                       TLESFLGL P PPVEP+AD WWVDDLL YQQQN QL
Sbjct: 181 TPFDVELKHQISTLESFLGLDPSPPVEPTADLWWVDDLLTYQQQNLQL 228

[Close]
BLAST of Carg19647 vs. TrEMBL
Match: tr|A0A1S3AY72|A0A1S3AY72_CUCME (ethylene-responsive transcription factor RAP2-3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483869 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.5e-39
Identity = 128/226 (56.64%), Postives = 142/226 (62.83%), Query Frame = 0 

Query: 1   MCGGAIISD--------------PVVDTT-FSDLLGLD----HDLSANSSHPSQVKIENP 60
           MCGGAIISD              P +DTT FSDLLGLD     +   N++ PS   + N 
Sbjct: 1   MCGGAIISDYVEPNPVVVDNLLWPDLDTTLFSDLLGLDLSGTQNYLFNNTTPSANVVHNI 60

Query: 61  DGCEEAAPAAAAAEGVAGDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTY 120
              + +       EG   ++KKP+K+RK+KYRGIRQRPWGKWAAEIRDPQKGLRVWLGTY
Sbjct: 61  PK-QLSQERVEGNEGATSEMKKPQKVRKSKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTY 120

Query: 121 NTAEEAAIAYDQAAVRIRGKKAKLNFTHXXXXXXXXXXXXXXXXXXXXIQ---------- 180
           NTAEEAA AYDQAA+R            XXXXXXXXXXXXXXXXXXXX            
Sbjct: 121 NTAEEAARAYDQAAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSATP 180

Query: 181 ---------PTLESFLGLYPLPPVEPSADPWWVDDLLIYQQQNFQL 189
                     TLESFLGL P PPVEP+AD WWVDDLL YQQQN QL
Sbjct: 181 FDVELKHQISTLESFLGLDPSPPVEPTADLWWVDDLLTYQQQNLQL 225

[Close]
BLAST of Carg19647 vs. TrEMBL
Match: tr|A0A2P5CLP1|A0A2P5CLP1_PARAD (AP2/ERF transcription factor OS=Parasponia andersonii OX=3476 GN=PanERF44 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.4e-29
Identity = 79/143 (55.24%), Postives = 89/143 (62.24%), Query Frame = 0 

Query: 1   MCGGAIISDPVVD---------------TTFSDLLGLDHDLSANSSHPSQVKIENPDGCE 60
           MCGGAIISD V                  T SDLLG+DH  S+N++  +  K +   G  
Sbjct: 1   MCGGAIISDFVAAKRGRKLTPKDLWSELDTISDLLGIDHGYSSNATMVNDKKGQKLKG-- 60

Query: 61  EAAPAAAAAEGVAGDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQKGLRVWLGTYNTAE 120
                    +G   D+K   + RK  YRGIRQRPWGKWAAEIRDPQKG RVWLGTYNTAE
Sbjct: 61  ----RVREEDGGNNDIKSTPRSRKNVYRGIRQRPWGKWAAEIRDPQKGARVWLGTYNTAE 120

Query: 121 EAAIAYDQAAVRIRGKKAKLNFT 129
           EAA AYD+AA RIRG KAKLNFT
Sbjct: 121 EAARAYDEAAKRIRGDKAKLNFT 137

[Close]
BLAST of Carg19647 vs. TrEMBL
Match: tr|A0A1L6CAX8|A0A1L6CAX8_9ROSI (AP2/ERF domain-containing transcription factor OS=Vernicia montana OX=316732 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.1e-29
Identity = 81/155 (52.26%), Postives = 92/155 (59.35%), Query Frame = 0 

Query: 1   MCGGAIISDPVVD---------------TTFSDLLGLDHDLSANS-------------SH 60
           MCGGAIISD V                  TFSD LGLD+  + N               +
Sbjct: 1   MCGGAIISDFVAVKRSRRLNAEDLWSELDTFSDFLGLDYPNNGNKDQSLPTQFDLKLPQN 60

Query: 61  PSQVKIENPDGCEEAAPAAAAAEGVAGDVKKPKKIRKTKYRGIRQRPWGKWAAEIRDPQK 120
           P+Q+  E   G E+        EG   + KK ++IRK  YRGIRQRPWGKWAAEIRDP K
Sbjct: 61  PNQLIKEVGSGSEKMTEKPIGNEGTVKEGKKTRRIRKNIYRGIRQRPWGKWAAEIRDPHK 120

Query: 121 GLRVWLGTYNTAEEAAIAYDQAAVRIRGKKAKLNF 128
           G+RVWLGTYNTAEEAA AYD+AA RIRG KAKLNF
Sbjct: 121 GVRVWLGTYNTAEEAAKAYDEAAKRIRGDKAKLNF 155

The following BLAST results are available for this feature:
BLAST of Carg19647 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022955821.12.5e-8395.24ethylene-responsive transcription factor ERF071-like [Cucurbita moschata][more]
XP_023526721.12.5e-8394.15ethylene-responsive transcription factor ERF071-like [Cucurbita pepo subsp. pepo... [more]
XP_022979943.16.4e-7987.23ethylene-responsive transcription factor ERF071-like [Cucurbita maxima][more]
XP_022137925.19.4e-4659.63ethylene-responsive transcription factor RAP2-3-like [Momordica charantia][more]
XP_004134228.11.6e-4551.56PREDICTED: ethylene-responsive transcription factor RAP2-3-like [Cucumis sativus... [more]
BLAST of Carg19647 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47520.11.7e-2551.18Integrase-type DNA-binding superfamily protein[more]
AT3G16770.13.8e-2551.70ethylene-responsive element binding protein[more]
AT1G53910.11.6e-2369.86related to AP2 12[more]
AT1G72360.21.6e-2348.09Integrase-type DNA-binding superfamily protein[more]
AT3G14230.17.9e-2365.43related to AP2 2[more]
BLAST of Carg19647 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O22259|ERF71_ARATH3.1e-2451.18Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|P42736|RAP23_ARATH6.9e-2451.70Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q6K7E6|ERF1_ORYSJ9.9e-2375.76Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica OX=39... [more]
sp|Q9SSA8|RA212_ARATH2.9e-2269.86Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana OX=3702... [more]
sp|Q9LUM4|RAP22_ARATH1.4e-2165.43Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Carg19647 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7Z6|A0A0A0L7Z6_CUCSA1.1e-4551.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G164580 PE=4 SV=1[more]
tr|A0A1S3AY54|A0A1S3AY54_CUCME1.9e-3956.58ethylene-responsive transcription factor RAP2-3 isoform X1 OS=Cucumis melo OX=36... [more]
tr|A0A1S3AY72|A0A1S3AY72_CUCME2.5e-3956.64ethylene-responsive transcription factor RAP2-3 isoform X2 OS=Cucumis melo OX=36... [more]
tr|A0A2P5CLP1|A0A2P5CLP1_PARAD1.4e-2955.24AP2/ERF transcription factor OS=Parasponia andersonii OX=3476 GN=PanERF44 PE=4 S... [more]
tr|A0A1L6CAX8|A0A1L6CAX8_9ROSI3.1e-2952.26AP2/ERF domain-containing transcription factor OS=Vernicia montana OX=316732 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR036955AP2/ERF_dom_sf
IPR001471AP2/ERF_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19647-RACarg19647-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 94..110
score: 66.31
coord: 72..83
score: 70.45
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 71..134
e-value: 3.0E-38
score: 143.1
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 70..120
e-value: 1.0E-12
score: 47.9
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 71..128
score: 23.644
IPR001471AP2/ERF domainCDDcd00018AP2coord: 72..127
e-value: 4.77665E-32
score: 110.824
IPR036955AP2/ERF domain superfamilyGENE3DG3DSA:3.30.730.10coord: 70..129
e-value: 3.5E-30
score: 105.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..147
NoneNo IPR availablePANTHERPTHR31190:SF73SUBFAMILY NOT NAMEDcoord: 33..144
NoneNo IPR availablePANTHERPTHR31190FAMILY NOT NAMEDcoord: 33..144
IPR016177DNA-binding domain superfamilySUPERFAMILYSSF54171DNA-binding domaincoord: 71..128

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19647Cla021765Watermelon (97103) v1carwmB0269
Carg19647Cla009283Watermelon (97103) v1carwmB0270
Carg19647Csa6G318160Cucumber (Chinese Long) v2carcuB0307
Carg19647Csa3G164580Cucumber (Chinese Long) v2carcuB0306
Carg19647MELO3C006688Melon (DHL92) v3.5.1carmeB0280
Carg19647MELO3C021306Melon (DHL92) v3.5.1carmeB0279
Carg19647ClCG06G004930Watermelon (Charleston Gray)carwcgB0272
Carg19647ClCG05G006290Watermelon (Charleston Gray)carwcgB0271
Carg19647CSPI06G17380Wild cucumber (PI 183967)carcpiB0311
Carg19647CSPI03G14710Wild cucumber (PI 183967)carcpiB0310
Carg19647Cucsa.069280Cucumber (Gy14) v1carcgyB0328
Carg19647Cucsa.252810Cucumber (Gy14) v1carcgyB0329
Carg19647CmaCh14G016060Cucurbita maxima (Rimu)carcmaB0391
Carg19647CmaCh06G015430Cucurbita maxima (Rimu)carcmaB0393
Carg19647CmoCh14G016420Cucurbita moschata (Rifu)carcmoB0388
Carg19647Lsi09G014540Bottle gourd (USVL1VR-Ls)carlsiB252
Carg19647Lsi05G015640Bottle gourd (USVL1VR-Ls)carlsiB254
Carg19647CsGy3G014830Cucumber (Gy14) v2carcgybB0294
Carg19647CsGy6G016860Cucumber (Gy14) v2carcgybB0295
Carg19647MELO3C006688.2Melon (DHL92) v3.6.1carmedB0292
Carg19647MELO3C021306.2Melon (DHL92) v3.6.1carmedB0291
Carg19647CsaV3_6G023790Cucumber (Chinese Long) v3carcucB0310
Carg19647CsaV3_3G014920Cucumber (Chinese Long) v3carcucB0309
Carg19647Cla97C05G087870Watermelon (97103) v2carwmbB0287
Carg19647Cla97C06G114420Watermelon (97103) v2carwmbB0288
Carg19647Bhi01G000749Wax gourdcarwgoB0365
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19647Carg18858Silver-seed gourdcarcarB316
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19647Silver-seed gourdcarcarB079
Carg19647Silver-seed gourdcarcarB318
Carg19647Cucurbita maxima (Rimu)carcmaB0392
Carg19647Cucurbita maxima (Rimu)carcmaB0394
Carg19647Cucurbita moschata (Rifu)carcmoB0389
Carg19647Cucurbita moschata (Rifu)carcmoB0390
Carg19647Cucurbita moschata (Rifu)carcmoB0391
Carg19647Cucurbita pepo (Zucchini)carcpeB0393
Carg19647Cucurbita pepo (Zucchini)carcpeB0394
Carg19647Cucurbita pepo (Zucchini)carcpeB0395
Carg19647Cucurbita pepo (Zucchini)carcpeB0396