Carg19097 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19097
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MYB transcription factor
Location	Cucurbita_argyrosperma_scaffold_112 : 170790 .. 171128 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA

mRNA sequence

ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA

Coding sequence (CDS)

ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA

Protein sequence

MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM

Homology

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BLAST of Carg19097 vs. NCBI nr
Match: XP_022930698.1 (transcription factor MYB102-like [Cucurbita moschata])

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMI ITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF
Sbjct: 180 MDTLSQLLQPNEEFNNNTNSSMIPITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 239

Query: 61  ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           ESVI+TPKSSPTPLNSSSTCINNSS+EDERDSFCSNFLQFEIPEGLDFNDLM
Sbjct: 240 ESVISTPKSSPTPLNSSSTCINNSSHEDERDSFCSNFLQFEIPEGLDFNDLM 291

[Close]

BLAST of Carg19097 vs. NCBI nr
Match: XP_023531401.1 (transcription factor MYB41-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 99/119 (83.19%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSG-------DDGLIP 60
           MDTLSQLLQPN+E NNNTNSSMI ITNFVE SNSQE+MNFLA NLSG       DDGL P
Sbjct: 200 MDTLSQLLQPNDEINNNTNSSMIPITNFVECSNSQENMNFLASNLSGDDVNHVYDDGLKP 259

Query: 61  MASDLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
            ASD GFESVITTPKSSPTPLNSSSTCINNS NEDERDSFCSNFLQFEIP+GLDF D M
Sbjct: 260 KASDFGFESVITTPKSSPTPLNSSSTCINNSCNEDERDSFCSNFLQFEIPQGLDFADFM 318

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BLAST of Carg19097 vs. NCBI nr
Match: XP_022989033.1 (transcription factor MYB41-like [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 8.3e-34
Identity = 85/118 (72.03%), Postives = 95/118 (80.51%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMI ITNFVE SNSQE+MNFLA NLSGDD L+   +D+  
Sbjct: 201 MDTLSQLLQPNEEFNNNTNSSMIPITNFVECSNSQENMNFLASNLSGDDVLMNQVNDVYD 260

Query: 61  ESVITTPKSSPTP------LNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           +   + PK+S  P       NSSSTC+NNSSNEDERDSFCSNFLQFEIP+GLDF+D M
Sbjct: 261 DG--SQPKASDLPEITNDLQNSSSTCMNNSSNEDERDSFCSNFLQFEIPQGLDFDDFM 316

[Close]

BLAST of Carg19097 vs. NCBI nr
Match: XP_022969164.1 (transcription factor MYB41-like [Cucurbita maxima])

HSP 1 Score: 137.1 bits (344), Expect = 3.6e-29
Identity = 82/136 (60.29%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 2   DTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLI--------- 61
           DTLSQLLQPN+   NN N+S + I+ FVE  NSQE++NFL  NLSG+D L+         
Sbjct: 202 DTLSQLLQPNDNV-NNANASSMPISRFVECPNSQENLNFLPSNLSGEDVLVNQPNYVYGE 261

Query: 62  ----PMAS-----------DLGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCSN 113
               P AS           +LGF+ VI+TPKSSPTPLNSSSTC+NN SSNEDERDS+CSN
Sbjct: 262 NGSNPTASNLPETWNDDVQNLGFDCVISTPKSSPTPLNSSSTCVNNSSSNEDERDSYCSN 321

[Close]

BLAST of Carg19097 vs. NCBI nr
Match: XP_022952800.1 (transcription factor MYB41 [Cucurbita moschata])

HSP 1 Score: 133.7 bits (335), Expect = 4.0e-28
Identity = 81/136 (59.56%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 2   DTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLI--------- 61
           DTLSQLLQPN+   N+ N+S + I+ F E+  SQE++NFL  NLSG D L+         
Sbjct: 202 DTLSQLLQPNDNV-NDANASSMPISTFDEFPYSQENLNFLPSNLSGGDVLVNQPNYVYGE 261

Query: 62  ----PMASD-----------LGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCSN 113
               P ASD           LGF+ VI+TPKSSPTPLNSSSTC+NN SSNEDERDS+CSN
Sbjct: 262 NGSNPTASDLPEIWNNDVQNLGFDCVISTPKSSPTPLNSSSTCVNNSSSNEDERDSYCSN 321

[Close]

BLAST of Carg19097 vs. TAIR10
Match: AT4G21440.1 (MYB-like 102)

HSP 1 Score: 52.0 bits (123), Expect = 2.8e-07
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 51  LIPMASDLGF---ESVITTPKSSPTPLNSSSTCINNS--SNEDERDSFCSNFLQFEIPEG 110
           L P  SD  F    SV+ TP SSP+P   +S+ IN+S  S EDE +S+CSN ++F+IP+ 
Sbjct: 283 LDPSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCSTEDEIESYCSNLMKFDIPDF 342

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BLAST of Carg19097 vs. Swiss-Prot
Match: sp|Q9LDR8|MY102_ARATH (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-06
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 51  LIPMASDLGF---ESVITTPKSSPTPLNSSSTCINNS--SNEDERDSFCSNFLQFEIPEG 110
           L P  SD  F    SV+ TP SSP+P   +S+ IN+S  S EDE +S+CSN ++F+IP+ 
Sbjct: 283 LDPSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCSTEDEIESYCSNLMKFDIPDF 342

[Close]

BLAST of Carg19097 vs. TrEMBL
Match: tr|A0A1S3C0Q7|A0A1S3C0Q7_CUCME (transcription factor MYB39 OS=Cucumis melo OX=3656 GN=LOC103495548 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.1e-21
Identity = 75/137 (54.74%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 4   LSQLLQPNEEFNNNTNSSMISITN-FVEYSN-SQEHMNFLAPNLS--------------G 63
           LSQLLQPN+  NN  +SS++ I++ FV+ SN SQE++NFL  NL+              G
Sbjct: 205 LSQLLQPNDNVNNTNSSSVMPISSTFVDCSNTSQENLNFLPTNLNCGEDVLMNQHNYMYG 264

Query: 64  DDGLIPMASD-----------LGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCS 113
            DG  P AS+           LGF+SV    KSSPTPLNSSST +NN SSNEDE+DSFCS
Sbjct: 265 GDGSNPTASEILDISNNNAQTLGFDSV----KSSPTPLNSSSTYLNNSSSNEDEKDSFCS 324

[Close]

BLAST of Carg19097 vs. TrEMBL
Match: tr|A0A0A0K293|A0A0A0K293_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046120 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.0e-19
Identity = 73/137 (53.28%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 4   LSQLLQPNEEFNNNTNSSMISITN-FVEYSN-SQEHMNFL-------------APN-LSG 63
           LSQLLQPN+  NN  +SS++ I++ FV+  N SQE++NFL              PN + G
Sbjct: 205 LSQLLQPNDNVNNTNSSSIMPISSTFVDCPNTSQENLNFLPTLLNCGEDVLMNQPNYIYG 264

Query: 64  DDGLIPMASD-----------LGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCS 113
            +G  P AS+           LGF+SV    KSSPTPLNSSST +NN SSNEDE+DSFCS
Sbjct: 265 GNGSNPTASEILDISNNNAQNLGFDSV----KSSPTPLNSSSTYLNNSSSNEDEKDSFCS 324

[Close]

BLAST of Carg19097 vs. TrEMBL
Match: tr|A0A2R6QCA8|A0A2R6QCA8_ACTCH (Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19035 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.0e-11
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 5   SQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIP----------- 64
           +QL Q  +  +   NS+ ++  NF E        N    +L+G+ G +P           
Sbjct: 225 TQLAQGMDMGHFPINSTDLNCQNFQE--------NVAPSSLNGNFGTLPNFGQNMFDQMK 284

Query: 65  MASDLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEG-LDFNDLM 113
            + +  F+SVI+TP SSPTPL SSST IN+SS EDER+S+CSN L+FEIPE  LDF+D M
Sbjct: 285 TSENFAFDSVISTPMSSPTPLTSSSTFINSSSTEDERESYCSNMLKFEIPESFLDFDDFM 336

[Close]

BLAST of Carg19097 vs. TrEMBL
Match: tr|A0A2I4HLG9|A0A2I4HLG9_9ROSI (transcription factor MYB39-like OS=Juglans regia OX=51240 GN=LOC109019196 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 57  DLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           +  FESV++TP SSPTP+NSSST I NSS EDE++S+CSN  +FEIPEGLDF++ M
Sbjct: 294 NFSFESVLSTPISSPTPMNSSSTFI-NSSTEDEKESYCSNLFKFEIPEGLDFDEFM 348

[Close]

BLAST of Carg19097 vs. TrEMBL
Match: tr|Q8H220|Q8H220_POPCN (Putative MYB transcription factor OS=Populus canescens OX=80863 GN=MYB PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 59  GFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           GF SV++TP SSP PLNS+ST IN SS EDERDS+CSNFL+FEIP+ LD ++ M
Sbjct: 322 GFASVLSTPSSSPAPLNSNSTYINCSSTEDERDSYCSNFLKFEIPDILDVSNFM 375

The following BLAST results are available for this feature:

BLAST of Carg19097 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930698.1	1.0e-52	97.32	transcription factor MYB102-like [Cucurbita moschata]	[more]
XP_023531401.1	1.5e-43	83.19	transcription factor MYB41-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989033.1	8.3e-34	72.03	transcription factor MYB41-like [Cucurbita maxima]	[more]
XP_022969164.1	3.6e-29	60.29	transcription factor MYB41-like [Cucurbita maxima]	[more]
XP_022952800.1	4.0e-28	59.56	transcription factor MYB41 [Cucurbita moschata]	[more]

BLAST of Carg19097 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21440.1	2.8e-07	48.44	MYB-like 102	[more]

BLAST of Carg19097 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LDR8\|MY102_ARATH	5.0e-06	48.44	Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1	[more]

BLAST of Carg19097 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0Q7\|A0A1S3C0Q7_CUCME	4.1e-21	54.74	transcription factor MYB39 OS=Cucumis melo OX=3656 GN=LOC103495548 PE=4 SV=1	[more]
tr\|A0A0A0K293\|A0A0A0K293_CUCSA	5.0e-19	53.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046120 PE=4 SV=1	[more]
tr\|A0A2R6QCA8\|A0A2R6QCA8_ACTCH	5.0e-11	43.33	Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE...	[more]
tr\|A0A2I4HLG9\|A0A2I4HLG9_9ROSI	1.9e-10	66.07	transcription factor MYB39-like OS=Juglans regia OX=51240 GN=LOC109019196 PE=4 S...	[more]
tr\|Q8H220\|Q8H220_POPCN	1.9e-10	68.52	Putative MYB transcription factor OS=Populus canescens OX=80863 GN=MYB PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19097-RA	Carg19097-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19097	Cp4.1LG15g07840	Cucurbita pepo (Zucchini)	carcpeB1013
Carg19097	Cp4.1LG04g03280	Cucurbita pepo (Zucchini)	carcpeB1015
Carg19097	CsGy7G003850	Cucumber (Gy14) v2	carcgybB0717
Carg19097	Cla97C02G027830	Watermelon (97103) v2	carwmbB0752

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19097	Carg19209	Silver-seed gourd	carcarB590

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19097	Silver-seed gourd	carcarB035
Carg19097	Silver-seed gourd	carcarB176
Carg19097	Cucumber (Gy14) v1	carcgyB0809
Carg19097	Cucumber (Gy14) v1	carcgyB0810
Carg19097	Cucurbita maxima (Rimu)	carcmaB1006
Carg19097	Cucurbita maxima (Rimu)	carcmaB1008
Carg19097	Cucurbita maxima (Rimu)	carcmaB1010
Carg19097	Cucurbita moschata (Rifu)	carcmoB0979
Carg19097	Cucurbita moschata (Rifu)	carcmoB0980
Carg19097	Cucurbita moschata (Rifu)	carcmoB0981
Carg19097	Cucurbita moschata (Rifu)	carcmoB0983
Carg19097	Cucurbita pepo (Zucchini)	carcpeB1012
Carg19097	Cucurbita pepo (Zucchini)	carcpeB1016
Carg19097	Wild cucumber (PI 183967)	carcpiB0755
Carg19097	Cucumber (Chinese Long) v2	carcuB0739
Carg19097	Cucumber (Chinese Long) v3	carcucB0758
Carg19097	Bottle gourd (USVL1VR-Ls)	carlsiB657
Carg19097	Bottle gourd (USVL1VR-Ls)	carlsiB659
Carg19097	Melon (DHL92) v3.5.1	carmeB0715
Carg19097	Melon (DHL92) v3.6.1	carmedB0728
Carg19097	Watermelon (Charleston Gray)	carwcgB0696
Carg19097	Watermelon (97103) v1	carwmB0718
Carg19097	Wax gourd	carwgoB0849
Carg19097	Wax gourd	carwgoB0847