Carg19097-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19097-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MYB transcription factor
Location	Cucurbita_argyrosperma_scaffold_112 : 170790 .. 171128 (-)
Sequence length	339

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA

mRNA sequence

ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA

Coding sequence (CDS)

ATGGACACATTATCACAACTCTTACAGCCCAACGAGGAATTCAATAATAACACAAACTCTTCAATGATATCCATCACAAACTTCGTTGAGTACTCAAATTCTCAAGAACATATGAATTTCTTAGCTCCAAATTTGAGTGGTGATGATGGCTTGATACCTATGGCTTCAGATTTAGGGTTTGAATCGGTTATAACAACGCCAAAATCAAGCCCCACGCCGTTGAATTCTTCATCTACTTGCATAAACAACAGCAGCAATGAGGATGAGAGAGACAGTTTTTGTAGTAACTTTTTGCAGTTTGAAATTCCTGAAGGCTTGGACTTTAATGATCTCATGTAA

Protein sequence

MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM

Homology

[Close]

BLAST of Carg19097-RA vs. NCBI nr
Match: XP_022930698.1 (transcription factor MYB102-like [Cucurbita moschata])

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMI ITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF
Sbjct: 180 MDTLSQLLQPNEEFNNNTNSSMIPITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 239

Query: 61  ESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           ESVI+TPKSSPTPLNSSSTCINNSS+EDERDSFCSNFLQFEIPEGLDFNDLM
Sbjct: 240 ESVISTPKSSPTPLNSSSTCINNSSHEDERDSFCSNFLQFEIPEGLDFNDLM 291

[Close]

BLAST of Carg19097-RA vs. NCBI nr
Match: XP_023531401.1 (transcription factor MYB41-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 99/119 (83.19%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSG-------DDGLIP 60
           MDTLSQLLQPN+E NNNTNSSMI ITNFVE SNSQE+MNFLA NLSG       DDGL P
Sbjct: 200 MDTLSQLLQPNDEINNNTNSSMIPITNFVECSNSQENMNFLASNLSGDDVNHVYDDGLKP 259

Query: 61  MASDLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
            ASD GFESVITTPKSSPTPLNSSSTCINNS NEDERDSFCSNFLQFEIP+GLDF D M
Sbjct: 260 KASDFGFESVITTPKSSPTPLNSSSTCINNSCNEDERDSFCSNFLQFEIPQGLDFADFM 318

[Close]

BLAST of Carg19097-RA vs. NCBI nr
Match: XP_022989033.1 (transcription factor MYB41-like [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 8.3e-34
Identity = 85/118 (72.03%), Postives = 95/118 (80.51%), Query Frame = 0


Query: 1   MDTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIPMASDLGF 60
           MDTLSQLLQPNEEFNNNTNSSMI ITNFVE SNSQE+MNFLA NLSGDD L+   +D+  
Sbjct: 201 MDTLSQLLQPNEEFNNNTNSSMIPITNFVECSNSQENMNFLASNLSGDDVLMNQVNDVYD 260

Query: 61  ESVITTPKSSPTP------LNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           +   + PK+S  P       NSSSTC+NNSSNEDERDSFCSNFLQFEIP+GLDF+D M
Sbjct: 261 DG--SQPKASDLPEITNDLQNSSSTCMNNSSNEDERDSFCSNFLQFEIPQGLDFDDFM 316

[Close]

BLAST of Carg19097-RA vs. NCBI nr
Match: XP_022969164.1 (transcription factor MYB41-like [Cucurbita maxima])

HSP 1 Score: 137.1 bits (344), Expect = 3.6e-29
Identity = 82/136 (60.29%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 2   DTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLI--------- 61
           DTLSQLLQPN+   NN N+S + I+ FVE  NSQE++NFL  NLSG+D L+         
Sbjct: 202 DTLSQLLQPNDNV-NNANASSMPISRFVECPNSQENLNFLPSNLSGEDVLVNQPNYVYGE 261

Query: 62  ----PMAS-----------DLGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCSN 113
               P AS           +LGF+ VI+TPKSSPTPLNSSSTC+NN SSNEDERDS+CSN
Sbjct: 262 NGSNPTASNLPETWNDDVQNLGFDCVISTPKSSPTPLNSSSTCVNNSSSNEDERDSYCSN 321

[Close]

BLAST of Carg19097-RA vs. NCBI nr
Match: XP_022952800.1 (transcription factor MYB41 [Cucurbita moschata])

HSP 1 Score: 133.7 bits (335), Expect = 4.0e-28
Identity = 81/136 (59.56%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 2   DTLSQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLI--------- 61
           DTLSQLLQPN+   N+ N+S + I+ F E+  SQE++NFL  NLSG D L+         
Sbjct: 202 DTLSQLLQPNDNV-NDANASSMPISTFDEFPYSQENLNFLPSNLSGGDVLVNQPNYVYGE 261

Query: 62  ----PMASD-----------LGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCSN 113
               P ASD           LGF+ VI+TPKSSPTPLNSSSTC+NN SSNEDERDS+CSN
Sbjct: 262 NGSNPTASDLPEIWNNDVQNLGFDCVISTPKSSPTPLNSSSTCVNNSSSNEDERDSYCSN 321

[Close]

BLAST of Carg19097-RA vs. TAIR10
Match: AT4G21440.1 (MYB-like 102)

HSP 1 Score: 52.0 bits (123), Expect = 2.8e-07
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 51  LIPMASDLGF---ESVITTPKSSPTPLNSSSTCINNS--SNEDERDSFCSNFLQFEIPEG 110
           L P  SD  F    SV+ TP SSP+P   +S+ IN+S  S EDE +S+CSN ++F+IP+ 
Sbjct: 283 LDPSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCSTEDEIESYCSNLMKFDIPDF 342

[Close]

BLAST of Carg19097-RA vs. Swiss-Prot
Match: sp|Q9LDR8|MY102_ARATH (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.0e-06
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 51  LIPMASDLGF---ESVITTPKSSPTPLNSSSTCINNS--SNEDERDSFCSNFLQFEIPEG 110
           L P  SD  F    SV+ TP SSP+P   +S+ IN+S  S EDE +S+CSN ++F+IP+ 
Sbjct: 283 LDPSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCSTEDEIESYCSNLMKFDIPDF 342

[Close]

BLAST of Carg19097-RA vs. TrEMBL
Match: tr|A0A1S3C0Q7|A0A1S3C0Q7_CUCME (transcription factor MYB39 OS=Cucumis melo OX=3656 GN=LOC103495548 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.1e-21
Identity = 75/137 (54.74%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 4   LSQLLQPNEEFNNNTNSSMISITN-FVEYSN-SQEHMNFLAPNLS--------------G 63
           LSQLLQPN+  NN  +SS++ I++ FV+ SN SQE++NFL  NL+              G
Sbjct: 205 LSQLLQPNDNVNNTNSSSVMPISSTFVDCSNTSQENLNFLPTNLNCGEDVLMNQHNYMYG 264

Query: 64  DDGLIPMASD-----------LGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCS 113
            DG  P AS+           LGF+SV    KSSPTPLNSSST +NN SSNEDE+DSFCS
Sbjct: 265 GDGSNPTASEILDISNNNAQTLGFDSV----KSSPTPLNSSSTYLNNSSSNEDEKDSFCS 324

[Close]

BLAST of Carg19097-RA vs. TrEMBL
Match: tr|A0A0A0K293|A0A0A0K293_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046120 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.0e-19
Identity = 73/137 (53.28%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 4   LSQLLQPNEEFNNNTNSSMISITN-FVEYSN-SQEHMNFL-------------APN-LSG 63
           LSQLLQPN+  NN  +SS++ I++ FV+  N SQE++NFL              PN + G
Sbjct: 205 LSQLLQPNDNVNNTNSSSIMPISSTFVDCPNTSQENLNFLPTLLNCGEDVLMNQPNYIYG 264

Query: 64  DDGLIPMASD-----------LGFESVITTPKSSPTPLNSSSTCINN-SSNEDERDSFCS 113
            +G  P AS+           LGF+SV    KSSPTPLNSSST +NN SSNEDE+DSFCS
Sbjct: 265 GNGSNPTASEILDISNNNAQNLGFDSV----KSSPTPLNSSSTYLNNSSSNEDEKDSFCS 324

[Close]

BLAST of Carg19097-RA vs. TrEMBL
Match: tr|A0A2R6QCA8|A0A2R6QCA8_ACTCH (Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19035 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.0e-11
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 5   SQLLQPNEEFNNNTNSSMISITNFVEYSNSQEHMNFLAPNLSGDDGLIP----------- 64
           +QL Q  +  +   NS+ ++  NF E        N    +L+G+ G +P           
Sbjct: 225 TQLAQGMDMGHFPINSTDLNCQNFQE--------NVAPSSLNGNFGTLPNFGQNMFDQMK 284

Query: 65  MASDLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEG-LDFNDLM 113
            + +  F+SVI+TP SSPTPL SSST IN+SS EDER+S+CSN L+FEIPE  LDF+D M
Sbjct: 285 TSENFAFDSVISTPMSSPTPLTSSSTFINSSSTEDERESYCSNMLKFEIPESFLDFDDFM 336

[Close]

BLAST of Carg19097-RA vs. TrEMBL
Match: tr|A0A2I4HLG9|A0A2I4HLG9_9ROSI (transcription factor MYB39-like OS=Juglans regia OX=51240 GN=LOC109019196 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 57  DLGFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           +  FESV++TP SSPTP+NSSST I NSS EDE++S+CSN  +FEIPEGLDF++ M
Sbjct: 294 NFSFESVLSTPISSPTPMNSSSTFI-NSSTEDEKESYCSNLFKFEIPEGLDFDEFM 348

[Close]

BLAST of Carg19097-RA vs. TrEMBL
Match: tr|Q8H220|Q8H220_POPCN (Putative MYB transcription factor OS=Populus canescens OX=80863 GN=MYB PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-10
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 59  GFESVITTPKSSPTPLNSSSTCINNSSNEDERDSFCSNFLQFEIPEGLDFNDLM 113
           GF SV++TP SSP PLNS+ST IN SS EDERDS+CSNFL+FEIP+ LD ++ M
Sbjct: 322 GFASVLSTPSSSPAPLNSNSTYINCSSTEDERDSYCSNFLKFEIPDILDVSNFM 375

The following BLAST results are available for this feature:

BLAST of Carg19097-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930698.1	1.0e-52	97.32	transcription factor MYB102-like [Cucurbita moschata]	[more]
XP_023531401.1	1.5e-43	83.19	transcription factor MYB41-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989033.1	8.3e-34	72.03	transcription factor MYB41-like [Cucurbita maxima]	[more]
XP_022969164.1	3.6e-29	60.29	transcription factor MYB41-like [Cucurbita maxima]	[more]
XP_022952800.1	4.0e-28	59.56	transcription factor MYB41 [Cucurbita moschata]	[more]

BLAST of Carg19097-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21440.1	2.8e-07	48.44	MYB-like 102	[more]

BLAST of Carg19097-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LDR8\|MY102_ARATH	5.0e-06	48.44	Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1	[more]

BLAST of Carg19097-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0Q7\|A0A1S3C0Q7_CUCME	4.1e-21	54.74	transcription factor MYB39 OS=Cucumis melo OX=3656 GN=LOC103495548 PE=4 SV=1	[more]
tr\|A0A0A0K293\|A0A0A0K293_CUCSA	5.0e-19	53.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046120 PE=4 SV=1	[more]
tr\|A0A2R6QCA8\|A0A2R6QCA8_ACTCH	5.0e-11	43.33	Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE...	[more]
tr\|A0A2I4HLG9\|A0A2I4HLG9_9ROSI	1.9e-10	66.07	transcription factor MYB39-like OS=Juglans regia OX=51240 GN=LOC109019196 PE=4 S...	[more]
tr\|Q8H220\|Q8H220_POPCN	1.9e-10	68.52	Putative MYB transcription factor OS=Populus canescens OX=80863 GN=MYB PE=2 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg19097	Carg19097	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19097-RA.CDS.1	Carg19097-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg19097-RA.exon.1	Carg19097-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg19097-RA	Carg19097-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87