Carg18984 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18984
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Copper transport protein like
Location	Cucurbita_argyrosperma_scaffold_115 : 45636 .. 47383 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAGATTGGCGAGGGCGAATTTCCCGAGTGTCTGTAATCTTTAACCATGTCTCAGGTACCGCTACGAATTTCTCGGAAATTTGTTCTTGAATGTAATTGTTGGAGATTCGCTTCACGTTTTTCGGCCTCGTTTTTTTTTTTTTCTTTTTCTCTTTCTGTCTCCCGTATGTTTTGGAGATCGAAGATACGTTGGTTTGTTCTTTTTAAACTATAAATCTGCTGTTTGGAGCATGAATCGTTGATTAAAATTGGCGTAGAAGGACTTGTGGATTTGTTTTGAAACATATTCAATCTATGGCGTATCAGATCTTTATATGCTATAAGAAATTATGTAAGCTACAGAGATGCAAGAGCTACTCACGCGATTGTTGATATCTTGTATAGTTCCTACTTATTTTGCGATTCAGACCTGCACATAGTTCAATTCTTTTAGCATTTTGTCCTTTTTCCTTGCTTCTTCTTCCTAAGGTCTTATGCCGTGGTTTTTCATTTGATGTGAATCTGACACCAGTGGTGGAAACGTCAGTAACCGAGCCAAATGAGGTCGAAGTCTAAGAGAGCTCCATAGAAGTATTTCTTTAGTATCGCTAATTGATCAACTTATTGGTTAATAATTGGTCAATCGATCACAAAGGAAGCTTTATCTTGATCGTATATTAGATTCTGGTCACAAAGGAATTTTTTCCCGCTCTTCCAAATTAGAATGTTCTGCTCTTTTTTGTGTTTTGAATTATTAATCTATGTTATTTTGGGAGCCAGAGTTGTTGAAAAATCACTGAGAATATTTATTGATATCACTGATAAAATTGGATTAGTAAGTTTCTGCGAAGAATTTGATAAAGGACCGTTGATATTAAGCACTCTTGAACAAGTTAAATTCTTGTGTGAGATGAACTAACTCTTATTTCTTGGTATCAGGCAGTCTGTATTGCACCTTCCTCTTCTAGCTGAGTTCTATGATTCTATCTTTAATAAATACAGTTTGGAATTTGTTTCTGTGCAGACTACTGTCCTCAAGGTTGCTATGTCATGTCAAGGCTGTGTTGGAGCCGTCAGACGTGTCTTGGGAAAACTGGAAGGTTTGTCATTCCTTGGCTAAATTTTGGTTGTCTCATGATGTGCTCTTCTTTGATGTGTAATCTTTGTATCGGTTCGTGGGGTCGAGTTTTGGTTTAGACATATATCTTGGACAAAGAGGTCAGAAGTTTGAACTTCACAAAGTTCTAGACTAATACACGAACTCTTGAAAGTGTAAACCATATGCATGCTTGGTTAATTTCATTGCAAGCTTAGTTCTCTTTTATGTTTTAAGATTTTTAGAATGAATTCTTGAGTGATGGTTAATAAATCAATCATTATTGCAAAATCGAGTATCCTTCAATCTAAACCCTTAGATTCTTGCTATTCCCAACTGAATATGAACGTTTTGAACTTTACTTAAGTGCTTGGCTACCATGTTCAGGAGTCGAGACATTTGACATCGACATTGATGCGCAAAAGGTGACTGTGAAAGGCAACGTGGAGCGCGATGTAGTTTTCCAAACTGTTTCCAAAACCGGGAAGAAGACTGCCTACTGGGAAGACGAAGCCACCAAAAAGAACAAGAAGCGACGAAAACCAAGCAACTGGCGGCCAACAAAGCCGCAACAGACAGCCCAATCGCCCCCCCCCAACAAGGCGAAGGCAAGGACCCCGCACAGCAAGCTGCACCAAACCGCAGTCCGGAAGCCACCACAAAAAAAATGA

mRNA sequence

GCAGAGATTGGCGAGGGCGAATTTCCCGAGTGTCTGTAATCTTTAACCATGTCTCAGACTACTGTCCTCAAGGTTGCTATGTCATGTCAAGGCTGTGTTGGAGCCGTCAGACGTGTCTTGGGAAAACTGGAAGGAGTCGAGACATTTGACATCGACATTGATGCGCAAAAGGTGACTGTGAAAGGCAACGTGGAGCGCGATGTAGTTTTCCAAACTGTTTCCAAAACCGGGAAGAAGACTGCCTACTGGGAAGACGAAGCCACCAAAAAGAACAAGAAGCGACGAAAACCAAGCAACTGGCGGCCAACAAAGCCGCAACAGACAGCCCAATCGCCCCCCCCCAACAAGGCGAAGGCAAGGACCCCGCACAGCAAGCTGCACCAAACCGCAGTCCGGAAGCCACCACAAAAAAAATGA

Coding sequence (CDS)

ATGTCTCAGACTACTGTCCTCAAGGTTGCTATGTCATGTCAAGGCTGTGTTGGAGCCGTCAGACGTGTCTTGGGAAAACTGGAAGGAGTCGAGACATTTGACATCGACATTGATGCGCAAAAGGTGACTGTGAAAGGCAACGTGGAGCGCGATGTAGTTTTCCAAACTGTTTCCAAAACCGGGAAGAAGACTGCCTACTGGGAAGACGAAGCCACCAAAAAGAACAAGAAGCGACGAAAACCAAGCAACTGGCGGCCAACAAAGCCGCAACAGACAGCCCAATCGCCCCCCCCCAACAAGGCGAAGGCAAGGACCCCGCACAGCAAGCTGCACCAAACCGCAGTCCGGAAGCCACCACAAAAAAAATGA

Protein sequence

MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAYWEDEATKKNKKRRKPSNWRPTKPQQTAQSPPPNKAKARTPHSKLHQTAVRKPPQKK

Homology

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: XP_022945074.1 (copper transport protein ATX1-like [Cucurbita moschata])

HSP 1 Score: 140.6 bits (353), Expect = 3.6e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKTAYWEDEA
Sbjct: 61 GKKTAYWEDEA 71

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: XP_023541206.1 (copper transport protein ATX1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.6 bits (353), Expect = 3.6e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKTAYWEDEA
Sbjct: 61 GKKTAYWEDEA 71

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: XP_022968569.1 (copper transport protein ATX1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 137.5 bits (345), Expect = 3.0e-29
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAVRRVLGKLEGV+ FDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVDAFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKTAYWEDEA
Sbjct: 61 GKKTAYWEDEA 71

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: XP_022968570.1 (copper transport protein ATX1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 137.5 bits (345), Expect = 3.0e-29
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAVRRVLGKLEGV+ FDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVDAFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKTAYWEDEA
Sbjct: 61 GKKTAYWEDEA 71

[Close]

BLAST of Carg18984 vs. NCBI nr
Match: XP_008446769.1 (PREDICTED: copper transport protein ATX1-like [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 4.0e-29
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAV+RVLGKLEGV+TFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVDTFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEAT 73
          GKKTAYWED+A+
Sbjct: 61 GKKTAYWEDDAS 72

[Close]

BLAST of Carg18984 vs. TAIR10
Match: AT3G56240.1 (copper chaperone)

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-26
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          M+QT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNVE + VFQTVSKT
Sbjct: 1  MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKT+YW  EA
Sbjct: 61 GKKTSYWPVEA 71

[Close]

BLAST of Carg18984 vs. TAIR10
Match: AT1G66240.1 (homolog of anti-oxidant 1)

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-25
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
           MSQT VL+VAM+C+GCVGAV+RVLGK+EGVE+FD+DI  QKVTVKGNV+ D V QTV+KT
Sbjct: 31  MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKT 90

Query: 61  GKKTAYWEDE 71
           GKKTA+WE E
Sbjct: 91  GKKTAFWEAE 100

[Close]

BLAST of Carg18984 vs. TAIR10
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 9.1e-12
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 7  LKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAY 66
          L V M C+GC   VRR + KL+GV+T +ID+D QKVTV G V+R+ V + V +TG+   Y
Sbjct: 20 LLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTAEY 79

Query: 67 W 68
          W
Sbjct: 80 W 80

[Close]

BLAST of Carg18984 vs. TAIR10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-10
Identity = 26/64 (40.62%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 4  TTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKK 63
          T VL+V++ C+GC   ++++L K++GV T +ID+  QKVTV GNVE +++ + + K G+ 
Sbjct: 31 TWVLRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRH 90

Query: 64 TAYW 68
             W
Sbjct: 91 AELW 94

[Close]

BLAST of Carg18984 vs. TAIR10
Match: AT2G18196.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 7.2e-09
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 3   QTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGK 62
           QT  LKV M C GC   V+  + KL GV++ +++++ ++VTV G VER  V + V + GK
Sbjct: 46  QTIDLKVRMCCSGCERVVKHAIYKLRGVDSVEVNLEMERVTVVGYVERKKVLKAVRRAGK 105

Query: 63  KTAYW 68
           +  +W
Sbjct: 106 RAEFW 110

[Close]

BLAST of Carg18984 vs. Swiss-Prot
Match: sp|O82089|CCH_ARATH (Copper transport protein CCH OS=Arabidopsis thaliana OX=3702 GN=CCH PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.0e-25
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          M+QT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNVE + VFQTVSKT
Sbjct: 1  MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKT+YW  EA
Sbjct: 61 GKKTSYWPVEA 71

[Close]

BLAST of Carg18984 vs. Swiss-Prot
Match: sp|Q94BT9|ATOX1_ARATH (Copper transport protein ATX1 OS=Arabidopsis thaliana OX=3702 GN=ATX1 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 7.6e-24
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQT VL+VAM+C+GCVGAV+RVLGK+EGVE+FD+DI  QKVTVKGNV+ D V QTV+KT
Sbjct: 1  MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKT 60

Query: 61 GKKTAYWEDE 71
          GKKTA+WE E
Sbjct: 61 GKKTAFWEAE 70

[Close]

BLAST of Carg18984 vs. Swiss-Prot
Match: sp|B3H6D0|HIP45_ARATH (Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX=3702 GN=HIPP45 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 7  LKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKKTAY 66
          L V M C+GC   VRR + KL+GV+T +ID+D QKVTV G V+R+ V + V +TG+   Y
Sbjct: 20 LLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTAEY 79

Query: 67 W 68
          W
Sbjct: 80 W 80

[Close]

BLAST of Carg18984 vs. Swiss-Prot
Match: sp|Q84J88|HIP36_ARATH (Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX=3702 GN=HIPP36 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.0e-09
Identity = 26/64 (40.62%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 4  TTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGKK 63
          T VL+V++ C+GC   ++++L K++GV T +ID+  QKVTV GNVE +++ + + K G+ 
Sbjct: 31 TWVLRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRH 90

Query: 64 TAYW 68
             W
Sbjct: 91 AELW 94

[Close]

BLAST of Carg18984 vs. Swiss-Prot
Match: sp|F4IQG4|HIP30_ARATH (Heavy metal-associated isoprenylated plant protein 30 OS=Arabidopsis thaliana OX=3702 GN=HIPP30 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 3   QTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKTGK 62
           QT  LKV M C GC   V+  + KL GV++ +++++ ++VTV G VER  V + V + GK
Sbjct: 46  QTIDLKVRMCCSGCERVVKHAIYKLRGVDSVEVNLEMERVTVVGYVERKKVLKAVRRAGK 105

Query: 63  KTAYW 68
           +  +W
Sbjct: 106 RAEFW 110

[Close]

BLAST of Carg18984 vs. TrEMBL
Match: tr|A0A1S3BFW4|A0A1S3BFW4_CUCME (copper transport protein ATX1-like OS=Cucumis melo OX=3656 GN=LOC103489398 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-29
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAV+RVLGKLEGV+TFDIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVDTFDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEAT 73
          GKKTAYWED+A+
Sbjct: 61 GKKTAYWEDDAS 72

[Close]

BLAST of Carg18984 vs. TrEMBL
Match: tr|A0A0A0KTF7|A0A0A0KTF7_CUCSA (Copper chaperone OS=Cucumis sativus OX=3659 GN=Csa_5G615220 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.6e-29
Identity = 67/72 (93.06%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQTTVLKVAMSCQGCVGAV+RVLGKLEGVET+DIDIDAQKVTVKGNVERDVVFQTVSKT
Sbjct: 1  MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETYDIDIDAQKVTVKGNVERDVVFQTVSKT 60

Query: 61 GKKTAYWEDEAT 73
          GKKTAYWE++A+
Sbjct: 61 GKKTAYWEEDAS 72

[Close]

BLAST of Carg18984 vs. TrEMBL
Match: tr|A0A2R6QAR7|A0A2R6QAR7_ACTCH (Copper transport protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20836 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.8e-23
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQT VLKV MSCQGCVGAV+RVLGK+EGVE+FDI+I+ QKVTVKGNV+ + VFQTVSKT
Sbjct: 1  MSQTVVLKVGMSCQGCVGAVKRVLGKMEGVESFDINIEEQKVTVKGNVQPEAVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKTA+WE EA
Sbjct: 61 GKKTAFWETEA 71

[Close]

BLAST of Carg18984 vs. TrEMBL
Match: tr|A0A1J3I3I5|A0A1J3I3I5_NOCCA (Copper transport protein CCH OS=Noccaea caerulescens OX=107243 GN=GA_TR12736_c0_g1_i1_g.40655 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.7e-23
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNVE + VFQTVSKT
Sbjct: 1  MSQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKTAYW  EA
Sbjct: 61 GKKTAYWPVEA 71

[Close]

BLAST of Carg18984 vs. TrEMBL
Match: tr|M4CSN8|M4CSN8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-23
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MSQTTVLKVAMSCQGCVGAVRRVLGKLEGVETFDIDIDAQKVTVKGNVERDVVFQTVSKT 60
          MSQT VLKV MSCQGCVGAV RVLGK+EGVE+FDIDI  QKVTVKGNVE + VFQTVSKT
Sbjct: 1  MSQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query: 61 GKKTAYWEDEA 72
          GKKT+YW  EA
Sbjct: 61 GKKTSYWPVEA 71

The following BLAST results are available for this feature:

BLAST of Carg18984 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945074.1	3.6e-30	100.00	copper transport protein ATX1-like [Cucurbita moschata]	[more]
XP_023541206.1	3.6e-30	100.00	copper transport protein ATX1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022968569.1	3.0e-29	97.18	copper transport protein ATX1-like isoform X1 [Cucurbita maxima]	[more]
XP_022968570.1	3.0e-29	97.18	copper transport protein ATX1-like isoform X2 [Cucurbita maxima]	[more]
XP_008446769.1	4.0e-29	94.44	PREDICTED: copper transport protein ATX1-like [Cucumis melo]	[more]

BLAST of Carg18984 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G56240.1	5.0e-26	80.28	copper chaperone	[more]
AT1G66240.1	4.2e-25	75.71	homolog of anti-oxidant 1	[more]
AT3G56891.1	9.1e-12	50.82	Heavy metal transport/detoxification superfamily protein	[more]
AT5G27690.1	5.0e-10	40.63	Heavy metal transport/detoxification superfamily protein	[more]
AT2G18196.1	7.2e-09	40.00	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of Carg18984 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82089\|CCH_ARATH	9.0e-25	80.28	Copper transport protein CCH OS=Arabidopsis thaliana OX=3702 GN=CCH PE=1 SV=1	[more]
sp\|Q94BT9\|ATOX1_ARATH	7.6e-24	75.71	Copper transport protein ATX1 OS=Arabidopsis thaliana OX=3702 GN=ATX1 PE=1 SV=2	[more]
sp\|B3H6D0\|HIP45_ARATH	1.6e-10	50.82	Heavy metal-associated isoprenylated plant protein 45 OS=Arabidopsis thaliana OX...	[more]
sp\|Q84J88\|HIP36_ARATH	9.0e-09	40.63	Heavy metal-associated isoprenylated plant protein 36 OS=Arabidopsis thaliana OX...	[more]
sp\|F4IQG4\|HIP30_ARATH	1.3e-07	40.00	Heavy metal-associated isoprenylated plant protein 30 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg18984 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFW4\|A0A1S3BFW4_CUCME	2.6e-29	94.44	copper transport protein ATX1-like OS=Cucumis melo OX=3656 GN=LOC103489398 PE=4 ...	[more]
tr\|A0A0A0KTF7\|A0A0A0KTF7_CUCSA	7.6e-29	93.06	Copper chaperone OS=Cucumis sativus OX=3659 GN=Csa_5G615220 PE=4 SV=1	[more]
tr\|A0A2R6QAR7\|A0A2R6QAR7_ACTCH	2.8e-23	80.28	Copper transport protein like OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]
tr\|A0A1J3I3I5\|A0A1J3I3I5_NOCCA	3.7e-23	83.10	Copper transport protein CCH OS=Noccaea caerulescens OX=107243 GN=GA_TR12736_c0_...	[more]
tr\|M4CSN8\|M4CSN8_BRARP	8.2e-23	81.69	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036163	HMA_dom_sf
IPR006121	HMA_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18984-RA	Carg18984-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 1..66 e-value: 6.8E-21 score: 76.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..122
None	No IPR available	PANTHER	PTHR22814:SF271	COPPER TRANSPORT PROTEIN CCH	coord: 1..93
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..93
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 7..63 e-value: 3.4E-14 score: 52.9
IPR006121	Heavy metal-associated domain, HMA	PROSITE	PS50846	HMA_2	coord: 3..66 score: 12.955
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 6..63 e-value: 1.11604E-13 score: 60.6973
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	SSF55008	HMA, heavy metal-associated domain	coord: 2..68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18984	Cla020497	Watermelon (97103) v1	carwmB1050
Carg18984	Csa5G615220	Cucumber (Chinese Long) v2	carcuB1066
Carg18984	MELO3C012358	Melon (DHL92) v3.5.1	carmeB1019
Carg18984	ClCG05G021700	Watermelon (Charleston Gray)	carwcgB1023
Carg18984	CSPI05G26420	Wild cucumber (PI 183967)	carcpiB1088
Carg18984	Cucsa.309040	Cucumber (Gy14) v1	carcgyB1167
Carg18984	CmaCh04G014250	Cucurbita maxima (Rimu)	carcmaB1457
Carg18984	CmaCh18G009400	Cucurbita maxima (Rimu)	carcmaB1456
Carg18984	CmoCh04G015000	Cucurbita moschata (Rifu)	carcmoB1412
Carg18984	CmoCh18G009440	Cucurbita moschata (Rifu)	carcmoB1411
Carg18984	Lsi04G001420	Bottle gourd (USVL1VR-Ls)	carlsiB960
Carg18984	Cp4.1LG09g03780	Cucurbita pepo (Zucchini)	carcpeB1464
Carg18984	Cp4.1LG01g14300	Cucurbita pepo (Zucchini)	carcpeB1466
Carg18984	CsGy5G025890	Cucumber (Gy14) v2	carcgybB1035
Carg18984	MELO3C012358.2	Melon (DHL92) v3.6.1	carmedB1031
Carg18984	CsaV3_5G035570	Cucumber (Chinese Long) v3	carcucB1099
Carg18984	Cla97C05G103400	Watermelon (97103) v2	carwmbB1109
Carg18984	Bhi07G000645	Wax gourd	carwgoB1236

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18984	Carg01911	Silver-seed gourd	carcarB629

The following block(s) are covering this gene:

None