Carg18739 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18739
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger protein 1
Location	Cucurbita_argyrosperma_scaffold_139 : 430862 .. 431460 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTTCCAGCAAAATCAGAGCCAGAAACTACCAGCATCAACTCATTGGCAGATGAACTTCCATGGCTGCAACAAGTTTCAATGGATAGCCCTCCAGAAATAAAAGATCCAAGTGACTCAAAAGACATAAGCCTTGAACTTGTTTCTCTCGATCTAAGCCTCTCAAACAAGGATTTGGGTGGGAGTTTGCCAGAAGAATTGAACCTAATTGACTTTTTTTGTGCTGATAATTTACCAAACTACATTTCTTACGAAGGTACAGAAGCAGCAGCTAAGCCTCGAGTTTTCTCCTGCACTTTTTGCCCAAGGGAGTTCTTAAGCCATTTTCCCATGCACCTGTTTTTGGTTCCTTTCATCCTTTTGAGCCTGAGGTCTGGGACAGACAGCCTCTTTACACGCAAGTGGCAACTGGCAAATGGCCCTTGTCGAAGAATTATCGGTCGGGGGCCTCACCGGTACTGCCATCAAGCAGCGGAGCAACAGGTTTTGATGGTGGTTGGAGGCTGTCGTCAAACAGTGACACATTGTTGGATTCAAAGCGTCCTCATAATGAACTGCACAAGCTAGACTGTTTAGACTTGTCTTTGAGGCTGTAA

mRNA sequence

ATGAGTCTTCCAGCAAAATCAGAGCCAGAAACTACCAGCATCAACTCATTGGCAGATGAACTTCCATGGCTGCAACAAGTTTCAATGGATAGCCCTCCAGAAATAAAAGATCCAAGTGACTCAAAAGACATAAGCCTTGAACTTGTTTCTCTCGATCTAAGCCTCTCAAACAAGGATTTGGGTGGGAGTTTGCCAGAAGAATTGAACCTAATTGACTTTTTTTGTGCTGATAATTTACCAAACTACATTTCTTACGAAGGTACAGAAGCAGCAGCTAAGCCTCGACCTGAGGTCTGGGACAGACAGCCTCTTTACACGCAAGTGGCAACTGGCAAATGGCCCTTGTCGAAGAATTATCGGTCGGGGGCCTCACCGGTACTGCCATCAAGCAGCGGAGCAACAGGTTTTGATGGTGGTTGGAGGCTGTCGTCAAACAGTGACACATTGTTGGATTCAAAGCGTCCTCATAATGAACTGCACAAGCTAGACTGTTTAGACTTGTCTTTGAGGCTGTAA

Coding sequence (CDS)

ATGAGTCTTCCAGCAAAATCAGAGCCAGAAACTACCAGCATCAACTCATTGGCAGATGAACTTCCATGGCTGCAACAAGTTTCAATGGATAGCCCTCCAGAAATAAAAGATCCAAGTGACTCAAAAGACATAAGCCTTGAACTTGTTTCTCTCGATCTAAGCCTCTCAAACAAGGATTTGGGTGGGAGTTTGCCAGAAGAATTGAACCTAATTGACTTTTTTTGTGCTGATAATTTACCAAACTACATTTCTTACGAAGGTACAGAAGCAGCAGCTAAGCCTCGACCTGAGGTCTGGGACAGACAGCCTCTTTACACGCAAGTGGCAACTGGCAAATGGCCCTTGTCGAAGAATTATCGGTCGGGGGCCTCACCGGTACTGCCATCAAGCAGCGGAGCAACAGGTTTTGATGGTGGTTGGAGGCTGTCGTCAAACAGTGACACATTGTTGGATTCAAAGCGTCCTCATAATGAACTGCACAAGCTAGACTGTTTAGACTTGTCTTTGAGGCTGTAA

Protein sequence

MSLPAKSEPETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSLPEELNLIDFFCADNLPNYISYEGTEAAAKPRPEVWDRQPLYTQVATGKWPLSKNYRSGASPVLPSSSGATGFDGGWRLSSNSDTLLDSKRPHNELHKLDCLDLSLRL

Homology

[Close]

BLAST of Carg18739 vs. NCBI nr
Match: XP_023548450.1 (zinc finger protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.2 bits (544), Expect = 3.6e-52
Identity = 128/230 (55.65%), Postives = 133/230 (57.83%), Query Frame = 0


Query: 29  MDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSL-PEELNLIDFFCADNLPNYISYEG 88
           MDSPPEIKDPSDSKDIS  LVSLD SLSNKDLGGSL PEELNLIDFF ADNLPN  S+EG
Sbjct: 1   MDSPPEIKDPSDSKDISPGLVSLDPSLSNKDLGGSLMPEELNLIDFFSADNLPNDTSHEG 60

Query: 89  TEAAAKPR---------------------------------------------------- 148
            EAAAKPR                                                    
Sbjct: 61  KEAAAKPRVFSCNFCPREFSSSQALGGHQNAHNRKRKMAQTGHKLVTNSTDCKQSSVSSL 120

Query: 149 ----------------------------------PEVWDRQPLYTQVATGKWPLSKNYRS 172
                                              +VWDRQPLYTQVA+G WPLS+NY+S
Sbjct: 121 PFQGFNRSLGIQMHSMIHKPFSHAPVFGSFRSFESKVWDRQPLYTQVASGIWPLSENYQS 180

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BLAST of Carg18739 vs. NCBI nr
Match: XP_008461428.1 (PREDICTED: zinc finger protein 1 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 7.0e-32
Identity = 105/241 (43.57%), Postives = 116/241 (48.13%), Query Frame = 0


Query: 9   PETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSL---P 68
           PETT INSLA+EL WLQ           DP+DSKD S ELVSLD  LSN +LGG L    
Sbjct: 3   PETTRINSLAEELTWLQ-----------DPNDSKDTSPELVSLDFRLSNTNLGGGLTQEE 62

Query: 69  EELNLIDFFCADNLPNYISYEGTEAAAKPRP----------------------------- 128
           EE NLIDFF ADNLPN  SYEG EAAA+PR                              
Sbjct: 63  EEPNLIDFFDADNLPNGSSYEGVEAAARPRVFSCNYCPRKFVSSQSLGGHQNAHSRERKM 122

Query: 129 ----------------------------------------------EVWDRQPLYTQVAT 172
                                                         E  +RQ LY Q+A 
Sbjct: 123 AKTSSKMVTNSTGCKYSKSLGIQARSMIHKPFSYSPVFGSFHPFQLEAKNRQSLYEQLAA 182

[Close]

BLAST of Carg18739 vs. NCBI nr
Match: XP_011659788.1 (PREDICTED: zinc finger protein 3-like [Cucumis sativus] >KGN45224.1 hypothetical protein Csa_7G432050 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.2e-30
Identity = 105/242 (43.39%), Postives = 115/242 (47.52%), Query Frame = 0


Query: 9   PETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSLPE-- 68
           PETTSINSLA ELPWLQ           DP+DSKD S ELVSL+  LSN +LGG L +  
Sbjct: 3   PETTSINSLA-ELPWLQ-----------DPNDSKDTSPELVSLEFRLSNTNLGGGLMQXX 62

Query: 69  --ELNLIDFFCADNLPNYISYEGTEAAAKPRP---------------------------- 128
             E NLIDFF ADNLPN   YEG EAAA+PR                             
Sbjct: 63  XXEPNLIDFFYADNLPNGSFYEGVEAAARPRVFSCNYCPRKFVSSQSLGGHQNAHSRERK 122

Query: 129 -----------------------------------------------EVWDRQPLYTQVA 172
                                                          E   RQ LY QVA
Sbjct: 123 IAKTGNKMVTNSTACKYSKSLGIQARSMIHKPFSHSSVFGSFHPFQLEAKSRQFLYEQVA 182

[Close]

BLAST of Carg18739 vs. NCBI nr
Match: XP_022154830.1 (zinc finger protein 1-like [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 9.2e-24
Identity = 102/261 (39.08%), Postives = 118/261 (45.21%), Query Frame = 0


Query: 1   MSLPAKSE--PETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNK 60
           MS+PAKSE  PETTSI+   DELPWL+QV             SKDIS E VSLDL LSN+
Sbjct: 1   MSVPAKSEPCPETTSISLSTDELPWLRQV-------------SKDISTE-VSLDLRLSNE 60

Query: 61  DLGGSL-PEELNLIDFFCADNLPNYISYEGTEAAAKPRP--------------------- 120
           DL GSL PEELNLID F A  LP   S +G E  AKPR                      
Sbjct: 61  DLVGSLMPEELNLIDSFDAICLPG-TSSQGKE-VAKPRVLSCNYCQRKFFSSQALGGHQN 120

Query: 121 ------------------------------------------------------------ 172
                                                                       
Sbjct: 121 AHSRQRKLAKIGRKLDHVSSEYKFSSVSSISLHGFNRSLGIQAHTMIQKPCASHAPIFGS 180

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BLAST of Carg18739 vs. TrEMBL
Match: tr|A0A1S3CEM5|A0A1S3CEM5_CUCME (zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103500023 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.6e-32
Identity = 105/241 (43.57%), Postives = 116/241 (48.13%), Query Frame = 0


Query: 9   PETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSL---P 68
           PETT INSLA+EL WLQ           DP+DSKD S ELVSLD  LSN +LGG L    
Sbjct: 3   PETTRINSLAEELTWLQ-----------DPNDSKDTSPELVSLDFRLSNTNLGGGLTQEE 62

Query: 69  EELNLIDFFCADNLPNYISYEGTEAAAKPRP----------------------------- 128
           EE NLIDFF ADNLPN  SYEG EAAA+PR                              
Sbjct: 63  EEPNLIDFFDADNLPNGSSYEGVEAAARPRVFSCNYCPRKFVSSQSLGGHQNAHSRERKM 122

Query: 129 ----------------------------------------------EVWDRQPLYTQVAT 172
                                                         E  +RQ LY Q+A 
Sbjct: 123 AKTSSKMVTNSTGCKYSKSLGIQARSMIHKPFSYSPVFGSFHPFQLEAKNRQSLYEQLAA 182

[Close]

BLAST of Carg18739 vs. TrEMBL
Match: tr|A0A0A0K8M2|A0A0A0K8M2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432050 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-30
Identity = 105/242 (43.39%), Postives = 115/242 (47.52%), Query Frame = 0


Query: 9   PETTSINSLADELPWLQQVSMDSPPEIKDPSDSKDISLELVSLDLSLSNKDLGGSLPE-- 68
           PETTSINSLA ELPWLQ           DP+DSKD S ELVSL+  LSN +LGG L +  
Sbjct: 3   PETTSINSLA-ELPWLQ-----------DPNDSKDTSPELVSLEFRLSNTNLGGGLMQXX 62

Query: 69  --ELNLIDFFCADNLPNYISYEGTEAAAKPRP---------------------------- 128
             E NLIDFF ADNLPN   YEG EAAA+PR                             
Sbjct: 63  XXEPNLIDFFYADNLPNGSFYEGVEAAARPRVFSCNYCPRKFVSSQSLGGHQNAHSRERK 122

Query: 129 -----------------------------------------------EVWDRQPLYTQVA 172
                                                          E   RQ LY QVA
Sbjct: 123 IAKTGNKMVTNSTACKYSKSLGIQARSMIHKPFSHSSVFGSFHPFQLEAKSRQFLYEQVA 182

The following BLAST results are available for this feature:

BLAST of Carg18739 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548450.1	3.6e-52	55.65	zinc finger protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_008461428.1	7.0e-32	43.57	PREDICTED: zinc finger protein 1 [Cucumis melo]	[more]
XP_011659788.1	2.2e-30	43.39	PREDICTED: zinc finger protein 3-like [Cucumis sativus] >KGN45224.1 hypothetical...	[more]
XP_022154830.1	9.2e-24	39.08	zinc finger protein 1-like [Momordica charantia]	[more]

BLAST of Carg18739 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg18739 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18739 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CEM5\|A0A1S3CEM5_CUCME	4.6e-32	43.57	zinc finger protein 1 OS=Cucumis melo OX=3656 GN=LOC103500023 PE=4 SV=1	[more]
tr\|A0A0A0K8M2\|A0A0A0K8M2_CUCSA	1.5e-30	43.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432050 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18739-RA	Carg18739-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18739	Cla015329	Watermelon (97103) v1	carwmB0345
Carg18739	Csa7G432050	Cucumber (Chinese Long) v2	carcuB0387
Carg18739	MELO3C023462	Melon (DHL92) v3.5.1	carmeB0359
Carg18739	ClCG09G003270	Watermelon (Charleston Gray)	carwcgB0346
Carg18739	CSPI07G20170	Wild cucumber (PI 183967)	carcpiB0391
Carg18739	Cucsa.105870	Cucumber (Gy14) v1	carcgyB0414
Carg18739	CmaCh17G008920	Cucurbita maxima (Rimu)	carcmaB0497
Carg18739	Lsi02G026710	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18739	Cp4.1LG12g07330	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18739	CsGy7G018450	Cucumber (Gy14) v2	carcgybB0366
Carg18739	MELO3C023462.2	Melon (DHL92) v3.6.1	carmedB0364
Carg18739	CsaV3_7G031960	Cucumber (Chinese Long) v3	carcucB0390
Carg18739	Cla97C09G165510	Watermelon (97103) v2	carwmbB0371
Carg18739	Bhi09G000427	Wax gourd	carwgoB0439

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18739	Carg13506	Silver-seed gourd	carcarB379

The following block(s) are covering this gene:

None