Carg18738 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18738
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S12
Location	Cucurbita_argyrosperma_scaffold_139 : 427525 .. 429676 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAATCTTCTCTACGAACATCCTCTCTCAGTCCTGCCGCCGCCGCAATTTCTCAATTCTCTGGTAAGCTTTTCTCTCTCTCTCTCTCTTCAATCTCCGGTTAGCAGTTTCTCGTTCTCCTCCTGGTTAGCCATTGTTATCCCTTCCTTGGTGTCACGAAAACAAAGATCGTCTCTATTAATCCCTCTCGTCCTCGGATTTCGAACTCGCAGCTGTTTATTGATCTCCCACTATCTTGATTATCAAAACTGTAAAACCAAACCCAGTAGAGTGAACGGATTAGTAGTTTACTCTATATGCCTTCGTTCTTGATTCAAACTGTCTGTTCTGGAGTTCCTCATTTGTTTTGTCTAATTATTATTATTATTATTTTGCAGTGTTTTTCTGCAAAAGAAGGAGAAACAACTTCTAATCAAGAAGAAAGATGTCAGCGTGAGTGGAAACTTGTTTATAACTTCTGCTAACTTTCTCGTTAATTGCCAATTTTTGTGTTGTAGCTGATGGTTTCCTTTTCAATATCTTGGATATACACGATGCCTTGGGTTTTTTTAGAAGTAGAATCTTCTGCTTGGAATCGATTATTTTGGGATTAAGAGTTGCTGAGGATTGAAGGGATCCCTTTATTACATGTTAAATAGTACTATGGAATTTGAGGCATTTTTTTTGGCAATATCATAATATTTGCGTAAATATCTACTCAATTGCCGTCTATTGTTGACAGTAGCATGCTATAGTGGGGTTTTTTAATCCCTTTTAACATGATTTCTTTTGCAGTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGATTGCAACCAGCCAGACTATGTTAAACTAGTCAAAGCCCTTTGTGCGGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCGAAAACCCTTGGCGAGTGGGCCGGTGTAAGTGTTTAAATCTTATTTAGGCATATTTTCTAACATTCTATCTATGGATAAAAGGGTTTATCTTGCTCGTTTTTTGTTCATCTTTGGCATCATTATGCACTATGCTATAAATACTCATTCTACCAAGATTAAGCCTTTACCTCATAATGTTTAGCTACATGTTTTACATGTTCTGAATCATACAATGTATACACATAGGTCTATGTTTTAAGCAAAGATTTCCCGTATAAGTTCAGGATTACAAACAAGTAATTTGTTTTCCATACTTGGTCTAATTCTTCAGCTATGCAAGATTGACTCAGAAGGAAAGGCAAGGAAGGTTGTCGGTTGCTCTTGTGTCGTAGTTAAGGTACATCCGTGTGTCCATTCACATCCATAGCAACTATTCCGTCTTAGAATACATTTTTGTTTACTTGAAATTTGAATGTGATATCCGTAGGACTTTGGGGAGGATCACGAGGCGCTTCACATCGTGCAGAAGCACGTGAGTTCAAATTGATCATCAAAATGGTGTCTGCTGAGACTACATTTGCTTGGCTCACTTAGAAAGTTTTTGATCATTAGCTATGTTTAGATTGGTGTACTGTTGCAGCTTTAACACCTTCACCCTACAATGTGTTCTTCCTTGTTGATTGATTGGAAAAACCAGTTTTTTATGTTCCGAGTCCATTGATGTGGAGCTCATTATTATCATTCCGGCCAACATAACAATATTCATCAAGAGTCTCCTTGCCATGGGAAGTGTTCAATTGATATTTATCTATCTTTTTCTTGCTGTATTCACTATTAGATTTATCTACCCCGCTCTTTCTTACCAAGTATTGTTATTGTGGTGATTTTTAATTTGTATCAAAATGGCAATATATCAAATGATGAAGCAATTTAGTTGAAGTCTTTTTAGGTAGTTATGATTTTTATCGACTTATACTCGTTAAGGGTACAACCTTTTGAGCTATGGATTTAGACTCGTAAAGGTACAATCTTTTGAGCTTAAGGGTTTAGATGCGCAAAGGTACAACCTTTTGAGCGACTTGATGAAGGTACGACTTTTTGAGCTCATGGGATTATCTCAGGTACAACCTTTTG

mRNA sequence

CCTAATCTTCTCTACGAACATCCTCTCTCAGTCCTGCCGCCGCCGCAATTTCTCAATTCTCTGTGTTTTTCTGCAAAAGAAGGAGAAACAACTTCTAATCAAGAAGAAAGATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGATTGCAACCAGCCAGACTATGTTAAACTAGTCAAAGCCCTTTGTGCGGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCGAAAACCCTTGGCGAGTGGGCCGGTCTATGCAAGATTGACTCAGAAGGAAAGGCAAGGAAGGTTGTCGGTTGCTCTTGTGTCGTAGTTAAGGACTTTGGGGAGGATCACGAGGCGCTTCACATCGTGCAGAAGCACGTGAGTTCAAATTGATCATCAAAATGGTGTCTGCTGAGACTACATTTGCTTGGCTCACTTAGAAAGTTTTTGATCATTAGCTATGTTTAGATTGGTGTACTGTTGCAGCTTTAACACCTTCACCCTACAATGTGTTCTTCCTTGTTGATTGATTGGAAAAACCAGTTTTTTATGTTCCGAGTCCATTGATGTGGAGCTCATTATTATCATTCCGGCCAACATAACAATATTCATCAAGAGTCTCCTTGCCATGGGAAGTGTTCAATTGATATTTATCTATCTTTTTCTTGCTGTATTCACTATTAGATTTATCTACCCCGCTCTTTCTTACCAAGTATTGTTATTGTGGTAGTTATGATTTTTATCGACTTATACTCGTTAAGGGTACAACCTTTTGAGCTATGGATTTAGACTCGTAAAGGTACAATCTTTTGAGCTTAAGGGTTTAGATGCGCAAAGGTACAACCTTTTGAGCGACTTGATGAAGGTACGACTTTTTGAGCTCATGGGATTATCTCAGGTACAACCTTTTG

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGATTGCAACCAGCCAGACTATGTTAAACTAGTCAAAGCCCTTTGTGCGGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCGAAAACCCTTGGCGAGTGGGCCGGTCTATGCAAGATTGACTCAGAAGGAAAGGCAAGGAAGGTTGTCGGTTGCTCTTGTGTCGTAGTTAAGGACTTTGGGGAGGATCACGAGGCGCTTCACATCGTGCAGAAGCACGTGAGTTCAAATTGA

Protein sequence

MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN

Homology

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BLAST of Carg18738 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata])

HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of Carg18738 vs. NCBI nr
Match: XP_022991483.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 279.6 bits (714), Expect = 5.7e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of Carg18738 vs. NCBI nr
Match: XP_023548009.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548011.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548012.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023548013.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 279.6 bits (714), Expect = 5.7e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAE PAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of Carg18738 vs. NCBI nr
Match: XP_004135873.1 (PREDICTED: 40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical protein Csa_7G432030 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 1.3e-71
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of Carg18738 vs. NCBI nr
Match: XP_004147008.1 (PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >KGN61872.1 hypothetical protein Csa_2G258680 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 1.3e-71
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

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BLAST of Carg18738 vs. TAIR10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 203.4 bits (516), Expect = 9.4e-53
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

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BLAST of Carg18738 vs. TAIR10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-51
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

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BLAST of Carg18738 vs. Swiss-Prot
Match: sp|Q9XHS0|RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.6e-56
Identity = 104/134 (77.61%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 6   VAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDC 65
           V    EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC
Sbjct: 9   VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDC 68

Query: 66  NQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGE 125
           +QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE
Sbjct: 69  DQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGE 128

Query: 126 DHEALHIVQKHVSS 140
           + E L+IVQ++V S
Sbjct: 129 ESEGLNIVQQYVKS 142

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BLAST of Carg18738 vs. Swiss-Prot
Match: sp|Q9SKZ3|RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]

BLAST of Carg18738 vs. Swiss-Prot
Match: sp|Q9S9P1|RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 9.3e-50
Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

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BLAST of Carg18738 vs. Swiss-Prot
Match: sp|Q76I81|RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.3e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

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BLAST of Carg18738 vs. Swiss-Prot
Match: sp|P25398|RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 155.2 bits (391), Expect = 5.3e-37
Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

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BLAST of Carg18738 vs. TrEMBL
Match: tr|A0A1S3C6L3|A0A1S3C6L3_CUCME (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.3e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Carg18738 vs. TrEMBL
Match: tr|A0A0A0KA08|A0A0A0KA08_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.3e-72
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Carg18738 vs. TrEMBL
Match: tr|A0A0A0LM61|A0A0A0LM61_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.3e-72
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]

BLAST of Carg18738 vs. TrEMBL
Match: tr|A0A1S3CDM3|A0A1S3CDM3_CUCME (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.1e-71
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]

BLAST of Carg18738 vs. TrEMBL
Match: tr|A0A2I4DLT0|A0A2I4DLT0_9ROSI (40S ribosomal protein S12 OS=Juglans regia OX=51240 GN=LOC108981396 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 9.2e-63
Identity = 121/140 (86.43%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS +E AVV E PAP LGE MDI TALQLVLRKSLAHGGL RGLHE AK IEKHAAQLCV
Sbjct: 1   MSGEEAAVVVETPAPLLGEAMDIMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           L EDC+QPDYVKLVKALCA+HNVNLMTVP+AK+LGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LAEDCDQPDYVKLVKALCADHNVNLMTVPNAKSLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIV++HV SN
Sbjct: 121 KDFGEDHEALHIVREHVKSN 140

The following BLAST results are available for this feature:

BLAST of Carg18738 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954225.1	1.9e-72	100.00	40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma...	[more]
XP_022991483.1	5.7e-72	99.29	40S ribosomal protein S12-like [Cucurbita maxima]	[more]
XP_023548009.1	5.7e-72	99.29	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ...	[more]
XP_004135873.1	1.3e-71	98.57	PREDICTED: 40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical ...	[more]
XP_004147008.1	1.3e-71	99.29	PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus] >XP_008457630.1 PRED...	[more]

BLAST of Carg18738 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32060.1	9.4e-53	69.44	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	5.1e-51	70.63	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of Carg18738 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XHS0\|RS12_HORVU	6.6e-56	77.61	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
sp\|Q9SKZ3\|RS122_ARATH	1.7e-51	69.44	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
sp\|Q9S9P1\|RS121_ARATH	9.3e-50	70.63	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
sp\|Q76I81\|RS12_BOVIN	5.3e-37	58.68	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
sp\|P25398\|RS12_HUMAN	5.3e-37	58.68	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of Carg18738 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C6L3\|A0A1S3C6L3_CUCME	8.3e-72	99.29	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1	[more]
tr\|A0A0A0KA08\|A0A0A0KA08_CUCSA	8.3e-72	98.57	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1	[more]
tr\|A0A0A0LM61\|A0A0A0LM61_CUCSA	8.3e-72	99.29	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]
tr\|A0A1S3CDM3\|A0A1S3CDM3_CUCME	7.1e-71	97.14	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1	[more]
tr\|A0A2I4DLT0\|A0A2I4DLT0_9ROSI	9.2e-63	86.43	40S ribosomal protein S12 OS=Juglans regia OX=51240 GN=LOC108981396 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR029064	L30e-like
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45
IPR000530	Ribosomal_S12e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18738-RA	Carg18738-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 85..106 score: 57.85 coord: 110..123 score: 81.17 coord: 30..43 score: 54.55 coord: 44..60 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 3..140
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..119 e-value: 7.6E-28 score: 96.0
IPR029064	50S ribosomal protein L30e-like	GENE3D	G3DSA:3.30.1330.30		coord: 5..140 e-value: 7.3E-59 score: 198.8
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	SSF55315	L30e-like	coord: 19..138
None	No IPR available	PANTHER	PTHR11843:SF3	SUBFAMILY NOT NAMED	coord: 3..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18738	Cla015328	Watermelon (97103) v1	carwmB0345
Carg18738	Csa7G432030	Cucumber (Chinese Long) v2	carcuB0387
Carg18738	MELO3C023463	Melon (DHL92) v3.5.1	carmeB0359
Carg18738	ClCG09G003280	Watermelon (Charleston Gray)	carwcgB0346
Carg18738	CSPI07G20150	Wild cucumber (PI 183967)	carcpiB0391
Carg18738	Cucsa.105880	Cucumber (Gy14) v1	carcgyB0414
Carg18738	CmaCh08G005920	Cucurbita maxima (Rimu)	carcmaB0499
Carg18738	CmaCh17G008930	Cucurbita maxima (Rimu)	carcmaB0497
Carg18738	CmoCh08G005830	Cucurbita moschata (Rifu)	carcmoB0482
Carg18738	CmoCh17G008630	Cucurbita moschata (Rifu)	carcmoB0480
Carg18738	Lsi02G026700	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18738	Cp4.1LG12g07490	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18738	Cp4.1LG17g08620	Cucurbita pepo (Zucchini)	carcpeB0494
Carg18738	CsGy7G018430	Cucumber (Gy14) v2	carcgybB0366
Carg18738	MELO3C023463.2	Melon (DHL92) v3.6.1	carmedB0364
Carg18738	CsaV3_7G031930	Cucumber (Chinese Long) v3	carcucB0390
Carg18738	Cla97C09G165520	Watermelon (97103) v2	carwmbB0371
Carg18738	Bhi09G000429	Wax gourd	carwgoB0439

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18738	Carg13505	Silver-seed gourd	carcarB379

The following block(s) are covering this gene:

None