Cucsa.105880 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.105880
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description40S ribosomal protein S12
Locationscaffold00929 : 332815 .. 333656 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCGTGAGTGGATACTTGTTTATTATAATTGCTAGCTTCCACGTTAATTCCCACTTTTGTGTTGCATCTGAGCGCGATTTTTCCCCAATATCTTATAAATAGACGATGACTTGTTTTGTTTAGAAGTAGAATCTGCTGCTTGCAATCGATtATTAAGAGTGTTtGACATTCTTCTGTATGAATAAGAATAGAGTTGGGAATATGATTTCTGAAGGCGACGAGGCAATCAATCTTGATGCTTCGAGATATAAATTATATGTTTTGGTCATTtTtCAAATAAAATGTAGATTTTTGAAGTTCAGTaTGTTTTATACGTTGATCTGTAATAGAtgTTTGTATGGGACTAAGGGTTGCTGGGGAGATTGCTATATTACACGTTCATGCGAACTGTTATTGAAGTTGAGGCATTTCTTTTTGGTAATGTCAGATATTTGAGACGATGACTAGGCAATTGTCTTCGATTGTTGAAAGAACCACGCCTTTGAGAAGTACTGTATTTGTTTTTCAACTTGGTTTTTTTtGCAGTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGATTGTTCTTAGAAAATCTTTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAGAGTGCTAAGGCTATTGAGAAACATGCTGCTCAGCTATGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAACTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGGCTGGTGTAAGTGTTCAATCTTATTTaGA

mRNA sequence

ATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGATTGTTCTTAGAAAATCTTTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAGAGTGCTAAGGCTATTGAGAAACATGCTGCTCAGCTATGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAACTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGGCTGGTGTAAGTGTTCAATCTTATTTAGA

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGATTGTTCTTAGAAAATCTTTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAGAGTGCTAAGGCTATTGAGAAACATGCTGCTCAGCTATGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAACTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGGCTGGTGTAAGTGTTCAATCTTATTTaGA

Protein sequence

MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGVSVQSYLX
Homology
[Close]
BLAST of Cucsa.105880 vs. Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-36
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = 1 

Query: 6   VAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDC 65
           V    EAP P LGEPMD+ TALQ+V++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC
Sbjct: 9   VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDC 68

Query: 66  NQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           +QPDYVKLVKALCAEHN +L+TVPSAKTLGEWAG+
Sbjct: 69  DQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGL 103

[Close]
BLAST of Cucsa.105880 vs. Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.5e-32
Identity = 68/104 (65.38%), Postives = 79/104 (75.96%), Query Frame = 1 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEWAG+
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGL 104

[Close]
BLAST of Cucsa.105880 vs. Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-30
Identity = 68/104 (65.38%), Postives = 78/104 (75.00%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPA----PALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEWAG+
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGL 104

[Close]
BLAST of Cucsa.105880 vs. Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.2e-21
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 1 

Query: 16  ALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNCNLMTVPSAKTLGEWAGV 101
           ALCAEH  NL+ V   K LGEW G+
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGL 91

[Close]
BLAST of Cucsa.105880 vs. Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 5.2e-21
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 1 

Query: 16  ALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNCNLMTVPSAKTLGEWAGV 101
           ALCAEH  NL+ V   K LGEW G+
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGL 91

[Close]
BLAST of Cucsa.105880 vs. TrEMBL
Match: A0A0A0KA08_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.1e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAG+
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGL 100

[Close]
BLAST of Cucsa.105880 vs. TrEMBL
Match: A0A0A0LM61_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.6e-47
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAG+
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGL 100

[Close]
BLAST of Cucsa.105880 vs. TrEMBL
Match: A0A068TPS8_COFCA (40S ribosomal protein S12 OS=Coffea canephora GN=GSCOC_T00022242001 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-40
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS +E  V  E PAPALGEPMDI TALQ+VLRKSLAHGGL RGLHE AK IEKHAAQLCV
Sbjct: 1   MSGEEQPVAVETPAPALGEPMDIMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           L EDCNQPDYVKLVKALCA+HN NL++VPSAKTLGEWAG+
Sbjct: 61  LAEDCNQPDYVKLVKALCADHNVNLISVPSAKTLGEWAGL 100

[Close]
BLAST of Cucsa.105880 vs. TrEMBL
Match: A0A022Q117_ERYGU (40S ribosomal protein S12 OS=Erythranthe guttata GN=MIMGU_mgv1a015907mg PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 7.8e-40
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 1 

Query: 1   MSADEVAVV-AEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 60
           MS +E  VV   APAP LGEPMDI TALQ+VL+KSLAHGGLV+GLH  AKAIEKH+AQLC
Sbjct: 1   MSGEEPVVVETPAPAPILGEPMDIMTALQLVLKKSLAHGGLVKGLHACAKAIEKHSAQLC 60

Query: 61  VLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGVS 102
           VL EDCNQPDYVKLVKALCA+HNCNL+TVPSAKTLGEWAGVS
Sbjct: 61  VLAEDCNQPDYVKLVKALCADHNCNLITVPSAKTLGEWAGVS 102

[Close]
BLAST of Cucsa.105880 vs. TrEMBL
Match: W9R0I8_9ROSA (40S ribosomal protein S12 OS=Morus notabilis GN=L484_013506 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-39
Identity = 83/101 (82.18%), Postives = 91/101 (90.10%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPA-PALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 60
           MS +E AV  EA A PALGEPMDI TALQ+VLRKSLAHGGL+RGLHESAK IEKHAAQLC
Sbjct: 1   MSGEEGAVAVEAAAAPALGEPMDITTALQLVLRKSLAHGGLIRGLHESAKVIEKHAAQLC 60

Query: 61  VLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           VL EDC+QPDYVKLVKALCA+HN N++TVPSAKTLGEWAG+
Sbjct: 61  VLAEDCDQPDYVKLVKALCADHNVNMLTVPSAKTLGEWAGL 101

[Close]
BLAST of Cucsa.105880 vs. TAIR10
Match: AT2G32060.1 (AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 137.9 bits (346), Expect = 3.7e-33
Identity = 68/104 (65.38%), Postives = 79/104 (75.96%), Query Frame = 1 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEWAG+
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGL 104

[Close]
BLAST of Cucsa.105880 vs. TAIR10
Match: AT1G15930.2 (AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 133.3 bits (334), Expect = 9.1e-32
Identity = 68/104 (65.38%), Postives = 78/104 (75.00%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPA----PALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEWAG+
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGL 104

[Close]
BLAST of Cucsa.105880 vs. NCBI nr
Match: gi|449436183|ref|XP_004135873.1| (PREDICTED: 40S ribosomal protein S12 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 5.9e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAG+
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGL 100

[Close]
BLAST of Cucsa.105880 vs. NCBI nr
Match: gi|659122493|ref|XP_008461174.1| (PREDICTED: 40S ribosomal protein S12 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-48
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEW+G+
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGL 100

[Close]
BLAST of Cucsa.105880 vs. NCBI nr
Match: gi|449458546|ref|XP_004147008.1| (PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 9.4e-47
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAG+
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGL 100

[Close]
BLAST of Cucsa.105880 vs. NCBI nr
Match: gi|661898254|emb|CDO98221.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 171.4 bits (433), Expect = 8.5e-40
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = 1 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS +E  V  E PAPALGEPMDI TALQ+VLRKSLAHGGL RGLHE AK IEKHAAQLCV
Sbjct: 1   MSGEEQPVAVETPAPALGEPMDIMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGV 101
           L EDCNQPDYVKLVKALCA+HN NL++VPSAKTLGEWAG+
Sbjct: 61  LAEDCNQPDYVKLVKALCADHNVNLISVPSAKTLGEWAGL 100

[Close]
BLAST of Cucsa.105880 vs. NCBI nr
Match: gi|604302140|gb|EYU21726.1| (hypothetical protein MIMGU_mgv1a015907mg [Erythranthe guttata])

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 1 

Query: 1   MSADEVAVV-AEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 60
           MS +E  VV   APAP LGEPMDI TALQ+VL+KSLAHGGLV+GLH  AKAIEKH+AQLC
Sbjct: 1   MSGEEPVVVETPAPAPILGEPMDIMTALQLVLKKSLAHGGLVKGLHACAKAIEKHSAQLC 60

Query: 61  VLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGVS 102
           VL EDCNQPDYVKLVKALCA+HNCNL+TVPSAKTLGEWAGVS
Sbjct: 61  VLAEDCNQPDYVKLVKALCADHNCNLITVPSAKTLGEWAGVS 102

The following BLAST results are available for this feature:
BLAST of Cucsa.105880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS12_HORVU2.0e-3675.7940S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1[more]
RS122_ARATH6.5e-3265.3840S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=1 SV=1[more]
RS121_ARATH1.6e-3065.3840S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1[more]
RS12_BOVIN5.2e-2156.4740S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1[more]
RS12_PIG5.2e-2156.4740S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2[more]
BLAST of Cucsa.105880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA08_CUCSA4.1e-4999.0040S ribosomal protein S12 OS=Cucumis sativus GN=Csa_7G432030 PE=3 SV=1[more]
A0A0A0LM61_CUCSA6.6e-4796.0040S ribosomal protein S12 OS=Cucumis sativus GN=Csa_2G258680 PE=3 SV=1[more]
A0A068TPS8_COFCA5.9e-4082.0040S ribosomal protein S12 OS=Coffea canephora GN=GSCOC_T00022242001 PE=3 SV=1[more]
A0A022Q117_ERYGU7.8e-4082.3540S ribosomal protein S12 OS=Erythranthe guttata GN=MIMGU_mgv1a015907mg PE=3 SV=... [more]
W9R0I8_9ROSA3.0e-3982.1840S ribosomal protein S12 OS=Morus notabilis GN=L484_013506 PE=3 SV=1[more]
BLAST of Cucsa.105880 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32060.13.7e-3365.38 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
AT1G15930.29.1e-3265.38 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
BLAST of Cucsa.105880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436183|ref|XP_004135873.1|5.9e-4999.00PREDICTED: 40S ribosomal protein S12 [Cucumis sativus][more]
gi|659122493|ref|XP_008461174.1|1.3e-4898.00PREDICTED: 40S ribosomal protein S12 [Cucumis melo][more]
gi|449458546|ref|XP_004147008.1|9.4e-4796.00PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus][more]
gi|661898254|emb|CDO98221.1|8.5e-4082.00unnamed protein product [Coffea canephora][more]
gi|604302140|gb|EYU21726.1|1.1e-3982.35hypothetical protein MIMGU_mgv1a015907mg [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000530Ribosomal_S12e
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.105880.1Cucsa.105880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 30..43
score: 7.8E-12coord: 44..60
score: 7.8E-12coord: 85..106
score: 7.8
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 7..99
score: 3.1
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 26..44
scor
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 26..103
score: 7.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.105880Cla015328Watermelon (97103) v1cgywmB142
Cucsa.105880Csa7G432030Cucumber (Chinese Long) v2cgycuB126
Cucsa.105880MELO3C023463Melon (DHL92) v3.5.1cgymeB133
Cucsa.105880ClCG09G003280Watermelon (Charleston Gray)cgywcgB141
Cucsa.105880CSPI07G20150Wild cucumber (PI 183967)cgycpiB127
Cucsa.105880CmaCh17G008930Cucurbita maxima (Rimu)cgycmaB0237
Cucsa.105880CmaCh08G005920Cucurbita maxima (Rimu)cgycmaB0241
Cucsa.105880CmoCh08G005830Cucurbita moschata (Rifu)cgycmoB0240
Cucsa.105880CmoCh17G008630Cucurbita moschata (Rifu)cgycmoB0236
Cucsa.105880Lsi02G026700Bottle gourd (USVL1VR-Ls)cgylsiB133
Cucsa.105880Cp4.1LG12g07490Cucurbita pepo (Zucchini)cgycpeB0229
Cucsa.105880Cp4.1LG17g08620Cucurbita pepo (Zucchini)cgycpeB0230
Cucsa.105880MELO3C023463.2Melon (DHL92) v3.6.1cgymedB133
Cucsa.105880CsaV3_7G031930Cucumber (Chinese Long) v3cgycucB131
Cucsa.105880Cla97C09G165520Watermelon (97103) v2cgywmbB141
Cucsa.105880Bhi09G000429Wax gourdcgywgoB161
Cucsa.105880Carg27703Silver-seed gourdcarcgyB0227
Cucsa.105880Carg18738Silver-seed gourdcarcgyB0414
Cucsa.105880Carg13505Silver-seed gourdcarcgyB0520
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.105880Cucumber (Gy14) v1cgycgyB054
Cucsa.105880Cucurbita maxima (Rimu)cgycmaB0238
Cucsa.105880Cucurbita moschata (Rifu)cgycmoB0238
Cucsa.105880Wild cucumber (PI 183967)cgycpiB126
Cucsa.105880Cucumber (Chinese Long) v2cgycuB125
Cucsa.105880Melon (DHL92) v3.5.1cgymeB134
Cucsa.105880Watermelon (Charleston Gray)cgywcgB143
Cucsa.105880Watermelon (97103) v1cgywmB144
Cucsa.105880Melon (DHL92) v3.6.1cgymedB134