CsaV3_7G031930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G031930
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description40S ribosomal protein S12
Locationchr7 : 20273349 .. 20275592 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATAAGCAAGCCCATTCATATGATACCAAAAGCTTTCATAAACCCCTAATCTTTTCTACAAACTCCCTCCTCTCAGTTCTGCCGCCGCCGCCATCTCTCAATCTCTGGTAAGCTTCTCTATCTCTCTCTAAATCTCCGGCCAAAATTTCTTTTTCTCCTCCAGCATGTCCATTTGTATCCCCTTCTATTTCTCCAAAAATACGCAGATAGTCTCCCTTCATCTTGCTCTTCCTTAGATTTCCATCTCGCAGCTGTTTATTGTGATCTCTTACTTGTTTGATTATCATATTAAAAAATCCAAACTGATTAGTGGTTTACTCCTTATGTCTTTGTTCTTGATTCAAACTGATTGTTATAGGTTTCATTATATTTCTTTTATCTAATTATTTAGTTTTTTTTTTTTTTTTGTGTCTTACAGATTTTCTTGCAATTGGAAGGAGGTAGAACTTCTAAATCAAGAAGAAAAATGTCAGCGTGAGTGGATACTTGTTTATTATAATTGCTAGCTTCCACGTTAATTCCCACTTTTGTGTTGCATCTGAGCGCGATTTTTCCCCAATATCTTATAAATAGACGATGACTTGTTTTGTTTAGAAGTAGAATCTGCTGCTTGCAATCGACTATTAAGAGTGTTCGACATTCTTCTGTATGAATAAGAATAGAGTTGGGAATATGATTTCTGAAGGCGACGAGGCAATCAATCTTGATGCTTCGAGATATAAATTATATGTTTTGGTCATTTGTCAAATAAAATGTAGATTTTTGAAGTTCAGTTTGTTTTATACGTTGATCTGTAATAGATTTTTGTATGGGACTAAGGGTTGCTGGGGAGATTGCTATATTACACGTTCATGCGAACTGTTATTGAAGTTGAGGCATTTCTTTTTGGTAATGTCAGATATTTGAGACGATGACTAGGCAATTGTCTTCGATTGTTGAAAGAACCACGCCTTTGAGAAGTACTGTATTTGTTTTTCAACTTGGTTTTTTTTGCAGTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGATTGTTCTTAGAAAATCTTTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAGAGTGCTAAGGCTATTGAGAAACATGCTGCTCAGCTATGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAACTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGGCTGGTGTAAGTGTTCAATCTTATTTAGAGTCAGTTTTTAACATTCATTCTGCCGTAAGATGGTATCCCCACATTGCTCTCTTTTCATTGATATCTGGCACCACTATGCTATATTATAATCATTCTACCAAGATTTAAGCTGTATCTTTCATTGTTTAGCTACATGTAAAACTTTGTTCTGGATTATATAAGAATATAAACAAAATCTATATATGCAAATCCAGTGGATTTGTTTGATCCTCATATAAATTGACCTGCTAACACTAGCGTGACGTTTTAGTGTCTGAATTCTACACCATCAGCATCTGCCTATTTTAGTAGCAAAAGCTTATAATGGGTTCAGGAGAATTCATTTTTTTCTTCCATATTTGGTCAATTGCAGCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGCGTCGTAGTTAAGGTACATATATATGTCCATTCACTTCCGTAGCAAACATCCTGTTCTTTCTCTTTTCATACAACCGGTTTACTTGAGTTTTGAATGTGTTTGTCCACAGGATTTTGGGGAAGACCACGAGGCGCTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGATTACCAAAATGGTGTCTGTTGAGATTACAGTTGTTGGTCTCATTTAGAAAGTTTTTGATCGTTAGTTATGTTTAGATTTGGTGCACTGTTGTTGCTTTAACACCTACCTACCTTCACTCTATAATGTGTTTTTCTTTGTTGATTGATTGGAAAGACTAGTTTTTATCATCATCGGACTCCATTGACGTGGAGCTCATTATCATTCTGGCCAACAGAACAATTTATTTGTCAAGAGTCTTCTTGTGCCCATGGGAAAAGTAGAATTGATATTTATCATCTTTTTTTTCTCTTCCTGATTTCATATCTTGATTTTATTTACCCCGTTTTATTTCTAATTTGGTTCAAAATGACAATTATAC

mRNA sequence

ATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGATTGTTCTTAGAAAATCTTTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAGAGTGCTAAGGCTATTGAGAAACATGCTGCTCAGCTATGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAACTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGCGTCGTAGTTAAGGATTTTGGGGAAGACCACGAGGCGCTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCTGCCCCGGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGATTGTTCTTAGAAAATCTTTGGCTCATGGTGGGCTTGTTCGAGGTCTTCATGAGAGTGCTAAGGCTATTGAGAAACATGCTGCTCAGCTATGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGCGCAGAGCACAACTGTAACTTGATGACAGTCCCAAGTGCAAAAACTCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGGTTGCTCTTGCGTCGTAGTTAAGGATTTTGGGGAAGACCACGAGGCGCTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

Protein sequence

MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
Homology
[Close]
BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_004135873.1 (PREDICTED: 40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical protein Csa_7G432030 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 2.3e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_008461174.1 (PREDICTED: 40S ribosomal protein S12 [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 2.0e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]
BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata])

HSP 1 Score: 279.6 bits (714), Expect = 5.7e-72
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_022991483.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 278.1 bits (710), Expect = 1.7e-71
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of CsaV3_7G031930 vs. NCBI nr
Match: XP_023548009.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548011.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548012.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023548013.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.1 bits (710), Expect = 1.7e-71
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAE PAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of CsaV3_7G031930 vs. TAIR10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-52
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]
BLAST of CsaV3_7G031930 vs. TAIR10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 195.7 bits (496), Expect = 2.0e-50
Identity = 99/143 (69.23%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]
BLAST of CsaV3_7G031930 vs. Swiss-Prot
Match: sp|Q9XHS0|RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.5e-55
Identity = 102/134 (76.12%), Postives = 119/134 (88.81%), Query Frame = 0 

Query: 6   VAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDC 65
           V    EAP P LGEPMD+ TALQ+V++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC
Sbjct: 9   VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDC 68

Query: 66  NQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGE 125
           +QPDYVKLVKALCAEHN +L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE
Sbjct: 69  DQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGE 128

Query: 126 DHEALHIVQKHVSS 140
           + E L+IVQ++V S
Sbjct: 129 ESEGLNIVQQYVKS 142

[Close]
BLAST of CsaV3_7G031930 vs. Swiss-Prot
Match: sp|Q9SKZ3|RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.8e-51
Identity = 99/144 (68.75%), Postives = 115/144 (79.86%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL++ +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QLCVL EDCNQPDYVKLVKALCA+H+  L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSSN 141
           C+V+KDFGE+  AL+IV+KH+ SN
Sbjct: 121 CLVIKDFGEETTALNIVKKHLDSN 144

[Close]
BLAST of CsaV3_7G031930 vs. Swiss-Prot
Match: sp|Q9S9P1|RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.5e-49
Identity = 99/143 (69.23%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL++ LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCS 120
           QL VL EDCNQPDYVKLVKALCA+H   L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCS
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCS 120

Query: 121 CVVVKDFGEDHEALHIVQKHVSS 140
           C+VVKDFGE+  AL IV KH++S
Sbjct: 121 CLVVKDFGEETTALSIVNKHIAS 143

[Close]
BLAST of CsaV3_7G031930 vs. Swiss-Prot
Match: sp|Q76I81|RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.0e-37
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 0 

Query: 16  ALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH  NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]
BLAST of CsaV3_7G031930 vs. Swiss-Prot
Match: sp|P25398|RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 154.5 bits (389), Expect = 9.0e-37
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 0 

Query: 16  ALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALCAEH  NL+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]
BLAST of CsaV3_7G031930 vs. TrEMBL
Match: tr|A0A0A0KA08|A0A0A0KA08_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.5e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of CsaV3_7G031930 vs. TrEMBL
Match: tr|A0A1S3CDM3|A0A1S3CDM3_CUCME (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.3e-72
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEW+GLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWSGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSS+
Sbjct: 121 KDFGEDHEALHIVQKHVSSS 140

[Close]
BLAST of CsaV3_7G031930 vs. TrEMBL
Match: tr|A0A1S3C6L3|A0A1S3C6L3_CUCME (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.4e-71
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of CsaV3_7G031930 vs. TrEMBL
Match: tr|A0A0A0LM61|A0A0A0LM61_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.4e-71
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIVQKHVSSN
Sbjct: 121 KDFGEDHEALHIVQKHVSSN 140

[Close]
BLAST of CsaV3_7G031930 vs. TrEMBL
Match: tr|A0A2I4DLT0|A0A2I4DLT0_9ROSI (40S ribosomal protein S12 OS=Juglans regia OX=51240 GN=LOC108981396 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.7e-62
Identity = 119/140 (85.00%), Postives = 127/140 (90.71%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MS +E AVV E PAP LGE MDI TALQ+VLRKSLAHGGL RGLHE AK IEKHAAQLCV
Sbjct: 1   MSGEEAAVVVETPAPLLGEAMDIMTALQLVLRKSLAHGGLARGLHEGAKVIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV 120
           L EDC+QPDYVKLVKALCA+HN NLMTVP+AK+LGEWAGLCKIDSEGKARKVVGCSCVVV
Sbjct: 61  LAEDCDQPDYVKLVKALCADHNVNLMTVPNAKSLGEWAGLCKIDSEGKARKVVGCSCVVV 120

Query: 121 KDFGEDHEALHIVQKHVSSN 141
           KDFGEDHEALHIV++HV SN
Sbjct: 121 KDFGEDHEALHIVREHVKSN 140

The following BLAST results are available for this feature:
BLAST of CsaV3_7G031930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135873.12.3e-73100.00PREDICTED: 40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical ... [more]
XP_008461174.12.0e-7298.57PREDICTED: 40S ribosomal protein S12 [Cucumis melo][more]
XP_022954225.15.7e-7298.5740S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma... [more]
XP_022991483.11.7e-7197.8640S ribosomal protein S12-like [Cucurbita maxima][more]
XP_023548009.11.7e-7197.8640S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ... [more]
BLAST of CsaV3_7G031930 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32060.12.1e-5268.75Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
AT1G15930.22.0e-5069.23Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein[more]
BLAST of CsaV3_7G031930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9XHS0|RS12_HORVU2.5e-5576.1240S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1[more]
sp|Q9SKZ3|RS122_ARATH3.8e-5168.7540S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1[more]
sp|Q9S9P1|RS121_ARATH3.5e-4969.2340S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1[more]
sp|Q76I81|RS12_BOVIN9.0e-3758.6840S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1[more]
sp|P25398|RS12_HUMAN9.0e-3758.6840S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3[more]
BLAST of CsaV3_7G031930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KA08|A0A0A0KA08_CUCSA1.5e-73100.0040S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1[more]
tr|A0A1S3CDM3|A0A1S3CDM3_CUCME1.3e-7298.5740S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1[more]
tr|A0A1S3C6L3|A0A1S3C6L3_CUCME2.4e-7197.8640S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1[more]
tr|A0A0A0LM61|A0A0A0LM61_CUCSA2.4e-7197.8640S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1[more]
tr|A0A2I4DLT0|A0A2I4DLT0_9ROSI2.7e-6285.0040S ribosomal protein S12 OS=Juglans regia OX=51240 GN=LOC108981396 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
IPR000530Ribosomal_S12e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G031930.1CsaV3_7G031930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 85..106
score: 57.85
coord: 110..123
score: 81.17
coord: 30..43
score: 54.55
coord: 44..60
score: 48.13
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 3..140
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 26..44
IPR02906450S ribosomal protein L30e-likeGENE3DG3DSA:3.30.1330.30coord: 5..140
e-value: 6.2E-58
score: 195.8
IPR02906450S ribosomal protein L30e-likeSUPERFAMILYSSF55315L30e-likecoord: 19..138
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 26..119
e-value: 1.4E-26
score: 91.9
NoneNo IPR availablePANTHERPTHR11843:SF3SUBFAMILY NOT NAMEDcoord: 3..140

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G031930CSPI07G20150Wild cucumber (PI 183967)cpicucB414
CsaV3_7G031930Cucsa.105880Cucumber (Gy14) v1cgycucB131
CsaV3_7G031930CmaCh08G005920Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G031930CmaCh17G008930Cucurbita maxima (Rimu)cmacucB0462
CsaV3_7G031930CmoCh08G005830Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G031930CmoCh17G008630Cucurbita moschata (Rifu)cmocucB0455
CsaV3_7G031930Cp4.1LG17g08620Cucurbita pepo (Zucchini)cpecucB0422
CsaV3_7G031930Cp4.1LG12g07490Cucurbita pepo (Zucchini)cpecucB0188
CsaV3_7G031930CsGy7G018430Cucumber (Gy14) v2cgybcucB347
CsaV3_7G031930Carg27703Silver-seed gourdcarcucB0215
CsaV3_7G031930Carg18738Silver-seed gourdcarcucB0390
CsaV3_7G031930Carg13505Silver-seed gourdcarcucB0486
CsaV3_7G031930Cla015328Watermelon (97103) v1cucwmB591
CsaV3_7G031930MELO3C023463Melon (DHL92) v3.5.1cucmeB537
CsaV3_7G031930ClCG09G003280Watermelon (Charleston Gray)cucwcgB546
CsaV3_7G031930Lsi02G026700Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G031930MELO3C023463.2Melon (DHL92) v3.6.1cucmedB525
CsaV3_7G031930Cla97C09G165520Watermelon (97103) v2cucwmbB592
CsaV3_7G031930Bhi09G000429Wax gourdcucwgoB730
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G031930Watermelon (97103) v2cucwmbB580
CsaV3_7G031930Cucumber (Chinese Long) v3cuccucB106
CsaV3_7G031930Cucumber (Chinese Long) v3cuccucB186
CsaV3_7G031930Cucumber (Gy14) v1cgycucB417
CsaV3_7G031930Cucurbita maxima (Rimu)cmacucB0595
CsaV3_7G031930Cucurbita moschata (Rifu)cmocucB0582
CsaV3_7G031930Cucurbita pepo (Zucchini)cpecucB0726
CsaV3_7G031930Wild cucumber (PI 183967)cpicucB247
CsaV3_7G031930Melon (DHL92) v3.5.1cucmeB567
CsaV3_7G031930Melon (DHL92) v3.5.1cucmeB586
CsaV3_7G031930Melon (DHL92) v3.6.1cucmedB553
CsaV3_7G031930Melon (DHL92) v3.6.1cucmedB573
CsaV3_7G031930Watermelon (Charleston Gray)cucwcgB583
CsaV3_7G031930Watermelon (97103) v1cucwmB606