Carg18738-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTAATCTTCTCTACGAACATCCTCTCTCAGTCCTGCCGCCGCCGCAATTTCTCAATTCTCTGGTAAGCTTTTCTCTCTCTCTCTCTCTTCAATCTCCGGTTAGCAGTTTCTCGTTCTCCTCCTGGTTAGCCATTGTTATCCCTTCCTTGGTGTCACGAAAACAAAGATCGTCTCTATTAATCCCTCTCGTCCTCGGATTTCGAACTCGCAGCTGTTTATTGATCTCCCACTATCTTGATTATCAAAACTGTAAAACCAAACCCAGTAGAGTGAACGGATTAGTAGTTTACTCTATATGCCTTCGTTCTTGATTCAAACTGTCTGTTCTGGAGTTCCTCATTTGTTTTGTCTAATTATTATTATTATTATTTTGCAGTGTTTTTCTGCAAAAGAAGGAGAAACAACTTCTAATCAAGAAGAAAGATGTCAGCGTGAGTGGAAACTTGTTTATAACTTCTGCTAACTTTCTCGTTAATTGCCAATTTTTGTGTTGTAGCTGATGGTTTCCTTTTCAATATCTTGGATATACACGATGCCTTGGGTTTTTTTAGAAGTAGAATCTTCTGCTTGGAATCGATTATTTTGGGATTAAGAGTTGCTGAGGATTGAAGGGATCCCTTTATTACATGTTAAATAGTACTATGGAATTTGAGGCATTTTTTTTGGCAATATCATAATATTTGCGTAAATATCTACTCAATTGCCGTCTATTGTTGACAGTAGCATGCTATAGTGGGGTTTTTTAATCCCTTTTAACATGATTTCTTTTGCAGTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGATTGCAACCAGCCAGACTATGTTAAACTAGTCAAAGCCCTTTGTGCGGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCGAAAACCCTTGGCGAGTGGGCCGGTGTAAGTGTTTAAATCTTATTTAGGCATATTTTCTAACATTCTATCTATGGATAAAAGGGTTTATCTTGCTCGTTTTTTGTTCATCTTTGGCATCATTATGCACTATGCTATAAATACTCATTCTACCAAGATTAAGCCTTTACCTCATAATGTTTAGCTACATGTTTTACATGTTCTGAATCATACAATGTATACACATAGGTCTATGTTTTAAGCAAAGATTTCCCGTATAAGTTCAGGATTACAAACAAGTAATTTGTTTTCCATACTTGGTCTAATTCTTCAGCTATGCAAGATTGACTCAGAAGGAAAGGCAAGGAAGGTTGTCGGTTGCTCTTGTGTCGTAGTTAAGGTACATCCGTGTGTCCATTCACATCCATAGCAACTATTCCGTCTTAGAATACATTTTTGTTTACTTGAAATTTGAATGTGATATCCGTAGGACTTTGGGGAGGATCACGAGGCGCTTCACATCGTGCAGAAGCACGTGAGTTCAAATTGATCATCAAAATGGTGTCTGCTGAGACTACATTTGCTTGGCTCACTTAGAAAGTTTTTGATCATTAGCTATGTTTAGATTGGTGTACTGTTGCAGCTTTAACACCTTCACCCTACAATGTGTTCTTCCTTGTTGATTGATTGGAAAAACCAGTTTTTTATGTTCCGAGTCCATTGATGTGGAGCTCATTATTATCATTCCGGCCAACATAACAATATTCATCAAGAGTCTCCTTGCCATGGGAAGTGTTCAATTGATATTTATCTATCTTTTTCTTGCTGTATTCACTATTAGATTTATCTACCCCGCTCTTTCTTACCAAGTATTGTTATTGTGGTGATTTTTAATTTGTATCAAAATGGCAATATATCAAATGATGAAGCAATTTAGTTGAAGTCTTTTTAGGTAGTTATGATTTTTATCGACTTATACTCGTTAAGGGTACAACCTTTTGAGCTATGGATTTAGACTCGTAAAGGTACAATCTTTTGAGCTTAAGGGTTTAGATGCGCAAAGGTACAACCTTTTGAGCGACTTGATGAAGGTACGACTTTTTGAGCTCATGGGATTATCTCAGGTACAACCTTTTG CCTAATCTTCTCTACGAACATCCTCTCTCAGTCCTGCCGCCGCCGCAATTTCTCAATTCTCTGTGTTTTTCTGCAAAAGAAGGAGAAACAACTTCTAATCAAGAAGAAAGATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGATTGCAACCAGCCAGACTATGTTAAACTAGTCAAAGCCCTTTGTGCGGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCGAAAACCCTTGGCGAGTGGGCCGGTCTATGCAAGATTGACTCAGAAGGAAAGGCAAGGAAGGTTGTCGGTTGCTCTTGTGTCGTAGTTAAGGACTTTGGGGAGGATCACGAGGCGCTTCACATCGTGCAGAAGCACGTGAGTTCAAATTGATCATCAAAATGGTGTCTGCTGAGACTACATTTGCTTGGCTCACTTAGAAAGTTTTTGATCATTAGCTATGTTTAGATTGGTGTACTGTTGCAGCTTTAACACCTTCACCCTACAATGTGTTCTTCCTTGTTGATTGATTGGAAAAACCAGTTTTTTATGTTCCGAGTCCATTGATGTGGAGCTCATTATTATCATTCCGGCCAACATAACAATATTCATCAAGAGTCTCCTTGCCATGGGAAGTGTTCAATTGATATTTATCTATCTTTTTCTTGCTGTATTCACTATTAGATTTATCTACCCCGCTCTTTCTTACCAAGTATTGTTATTGTGGTAGTTATGATTTTTATCGACTTATACTCGTTAAGGGTACAACCTTTTGAGCTATGGATTTAGACTCGTAAAGGTACAATCTTTTGAGCTTAAGGGTTTAGATGCGCAAAGGTACAACCTTTTGAGCGACTTGATGAAGGTACGACTTTTTGAGCTCATGGGATTATCTCAGGTACAACCTTTTG ATGTCAGCTGATGAAGTTGCAGTTGTGGCTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTTCTTAGAAAATCATTGGCTCACGGTGGGCTTGTTCGAGGCCTCCATGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTCTGTGTCTTGGGAGAAGATTGCAACCAGCCAGACTATGTTAAACTAGTCAAAGCCCTTTGTGCGGAGCACAACGTTAACTTGATGACAGTTCCAAGTGCGAAAACCCTTGGCGAGTGGGCCGGTCTATGCAAGATTGACTCAGAAGGAAAGGCAAGGAAGGTTGTCGGTTGCTCTTGTGTCGTAGTTAAGGACTTTGGGGAGGATCACGAGGCGCTTCACATCGTGCAGAAGCACGTGAGTTCAAATTGA MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN
BLAST of Carg18738-RA vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata]) HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
BLAST of Carg18738-RA vs. NCBI nr
Match: XP_022991483.1 (40S ribosomal protein S12-like [Cucurbita maxima]) HSP 1 Score: 279.6 bits (714), Expect = 5.7e-72 Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg18738-RA vs. NCBI nr
Match: XP_023548009.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548011.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548012.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023548013.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 279.6 bits (714), Expect = 5.7e-72 Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg18738-RA vs. NCBI nr
Match: XP_004135873.1 (PREDICTED: 40S ribosomal protein S12 [Cucumis sativus] >KGN45222.1 hypothetical protein Csa_7G432030 [Cucumis sativus]) HSP 1 Score: 278.5 bits (711), Expect = 1.3e-71 Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg18738-RA vs. NCBI nr
Match: XP_004147008.1 (PREDICTED: 40S ribosomal protein S12-like [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >KGN61872.1 hypothetical protein Csa_2G258680 [Cucumis sativus]) HSP 1 Score: 278.5 bits (711), Expect = 1.3e-71 Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg18738-RA vs. TAIR10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein) HSP 1 Score: 203.4 bits (516), Expect = 9.4e-53 Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0
BLAST of Carg18738-RA vs. TAIR10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein) HSP 1 Score: 197.6 bits (501), Expect = 5.1e-51 Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0
BLAST of Carg18738-RA vs. Swiss-Prot
Match: sp|Q9XHS0|RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 6.6e-56 Identity = 104/134 (77.61%), Postives = 120/134 (89.55%), Query Frame = 0
BLAST of Carg18738-RA vs. Swiss-Prot
Match: sp|Q9SKZ3|RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 1.7e-51 Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 0
BLAST of Carg18738-RA vs. Swiss-Prot
Match: sp|Q9S9P1|RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 9.3e-50 Identity = 101/143 (70.63%), Postives = 113/143 (79.02%), Query Frame = 0
BLAST of Carg18738-RA vs. Swiss-Prot
Match: sp|Q76I81|RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 5.3e-37 Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0
BLAST of Carg18738-RA vs. Swiss-Prot
Match: sp|P25398|RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3) HSP 1 Score: 155.2 bits (391), Expect = 5.3e-37 Identity = 71/121 (58.68%), Postives = 93/121 (76.86%), Query Frame = 0
BLAST of Carg18738-RA vs. TrEMBL
Match: tr|A0A1S3C6L3|A0A1S3C6L3_CUCME (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 8.3e-72 Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg18738-RA vs. TrEMBL
Match: tr|A0A0A0KA08|A0A0A0KA08_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 8.3e-72 Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg18738-RA vs. TrEMBL
Match: tr|A0A0A0LM61|A0A0A0LM61_CUCSA (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 8.3e-72 Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg18738-RA vs. TrEMBL
Match: tr|A0A1S3CDM3|A0A1S3CDM3_CUCME (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103499835 PE=3 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 7.1e-71 Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0
BLAST of Carg18738-RA vs. TrEMBL
Match: tr|A0A2I4DLT0|A0A2I4DLT0_9ROSI (40S ribosomal protein S12 OS=Juglans regia OX=51240 GN=LOC108981396 PE=3 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 9.2e-63 Identity = 121/140 (86.43%), Postives = 128/140 (91.43%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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