Carg18004 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18004
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_171 : 330047 .. 330397 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTATTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA

mRNA sequence

ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTATTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA

Coding sequence (CDS)

ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGCGGCGGCGGCGGCGGCGGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTATTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA

Protein sequence

MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN

Homology

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BLAST of Carg18004 vs. NCBI nr
Match: XP_011660097.1 (PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus] >KGN66421.1 hypothetical protein Csa_1G604070 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 3.9e-10
Identity = 45/87 (51.72%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 7  STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRXXXXXXXXXXXXXXXXXXXXX 66
          S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QR                     
Sbjct: 9  SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQR-------LVVVSPLLLVVAVH 68

Query: 67 XXXXXXXXXXXXXQTAVGFPWGVGFLL 94
                        +AVGFPWGVGFLL
Sbjct: 69 WLSLGRDGGYNNNHSAVGFPWGVGFLL 88

[Close]

BLAST of Carg18004 vs. NCBI nr
Match: XP_022157357.1 (uncharacterized protein LOC111024080 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 44/93 (47.31%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 1  MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRXXXXXXXXXXXXXXX 60
          MAA TRS   S+QWLLAT+ALI  GFLAYAIYDAA+AS +E+ QR               
Sbjct: 1  MAAPTRSGG-SEQWLLATVALITFGFLAYAIYDAAVASVAELFQR-------IVVVSPLL 60

Query: 61 XXXXXXXXXXXXXXXXXXXQTAVGFPWGVGFLL 94
                             Q AVGFPWGVG LL
Sbjct: 61 LVVAVHWLSIGGGSSGCGTQAAVGFPWGVGLLL 85

[Close]

BLAST of Carg18004 vs. TrEMBL
Match: tr|A0A0A0M2K2|A0A0A0M2K2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-10
Identity = 45/87 (51.72%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 7  STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRXXXXXXXXXXXXXXXXXXXXX 66
          S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QR                     
Sbjct: 9  SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQR-------LVVVSPLLLVVAVH 68

Query: 67 XXXXXXXXXXXXXQTAVGFPWGVGFLL 94
                        +AVGFPWGVGFLL
Sbjct: 69 WLSLGRDGGYNNNHSAVGFPWGVGFLL 88

The following BLAST results are available for this feature:

BLAST of Carg18004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660097.1	3.9e-10	51.72	PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus] >KGN66421.1 hy...	[more]
XP_022157357.1	1.8e-07	47.31	uncharacterized protein LOC111024080 [Momordica charantia]	[more]

BLAST of Carg18004 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg18004 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18004 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M2K2\|A0A0A0M2K2_CUCSA	2.6e-10	51.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18004-RA	Carg18004-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 7..98
None	No IPR available	PANTHER	PTHR33306:SF6	SUBFAMILY NOT NAMED	coord: 7..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18004	Cla004758	Watermelon (97103) v1	carwmB0163
Carg18004	Csa1G604070	Cucumber (Chinese Long) v2	carcuB0192
Carg18004	ClCG03G013980	Watermelon (Charleston Gray)	carwcgB0165
Carg18004	CSPI01G29780	Wild cucumber (PI 183967)	carcpiB0199
Carg18004	Cucsa.142880	Cucumber (Gy14) v1	carcgyB0212
Carg18004	CmaCh11G008180	Cucurbita maxima (Rimu)	carcmaB0231
Carg18004	CmoCh11G008230	Cucurbita moschata (Rifu)	carcmoB0241
Carg18004	Cp4.1LG04g11750	Cucurbita pepo (Zucchini)	carcpeB0248
Carg18004	CsGy1G029130	Cucumber (Gy14) v2	carcgybB0186
Carg18004	CsaV3_1G042240	Cucumber (Chinese Long) v3	carcucB0199

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18004	Silver-seed gourd	carcarB208
Carg18004	Silver-seed gourd	carcarB209
Carg18004	Cucurbita maxima (Rimu)	carcmaB0230
Carg18004	Cucurbita moschata (Rifu)	carcmoB0240
Carg18004	Cucurbita pepo (Zucchini)	carcpeB0247
Carg18004	Bottle gourd (USVL1VR-Ls)	carlsiB155
Carg18004	Melon (DHL92) v3.5.1	carmeB0178
Carg18004	Melon (DHL92) v3.6.1	carmedB0182
Carg18004	Watermelon (97103) v2	carwmbB0178
Carg18004	Wax gourd	carwgoB0221