CmoCh11G008230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G008230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr11 : 4098842 .. 4099180 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCATATACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTTGTCGTTCACTGGCTGTCCCTCGGAGGCGGCGGTGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTGTTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA

mRNA sequence

ATGGCTGCATATACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTTGTCGTTCACTGGCTGTCCCTCGGAGGCGGCGGTGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTGTTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA

Coding sequence (CDS)

ATGGCTGCATATACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATAGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCCGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTTGTCGTTCACTGGCTGTCCCTCGGAGGCGGCGGTGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTGTTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACCAACTGA

Homology

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BLAST of CmoCh11G008230 vs. TrEMBL
Match: A0A0A0M2K2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-36
Identity = 87/106 (82.08%), Postives = 95/106 (89.62%), Query Frame = 1


Query: 7   STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGG 66
           S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLV+VSPLLLVV VHWLSLG  
Sbjct: 9   SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRD 68

Query: 67  GGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 113
           GG   Y++N +AVGFPWGVGFLLLLLLFPWS AILLL+LYFFFLTN
Sbjct: 69  GG---YNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

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BLAST of CmoCh11G008230 vs. TrEMBL
Match: A0A061GSJ7_THECC (Peripheral-type benzodiazepine receptor-associated protein 1 OS=Theobroma cacao GN=TCM_040268 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.5e-14
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 2   AAYTRSTTF--SDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVH 61
           A  +RS+TF  S+QWLL T  +++ GFL Y +YDA +A+ASE+LQRL+++SPLLLVVVVH
Sbjct: 4   APRSRSSTFTPSEQWLLMTATILVCGFLGYVVYDAIMATASELLQRLLVISPLLLVVVVH 63

Query: 62  WLSLGG------GGGNSYYSHNQTAVGFPWGVGFLLLLLLF 95
           WLS G        G      H   A G PWGV  +LLLL F
Sbjct: 64  WLSTGSTLNFPMPGSEPGAIHR--AGGSPWGVASVLLLLFF 102

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BLAST of CmoCh11G008230 vs. TrEMBL
Match: A0A059D937_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03629 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-13
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 1


Query: 1   MAAYTRST----TFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVV 60
           MA  TRS+      SDQW L    +++ G L Y +YDA +A+ASE+LQRL+++SPLLLV+
Sbjct: 1   MAWATRSSIVGFNLSDQWFLTAATIVVGGILGYVVYDAVMATASELLQRLLVISPLLLVI 60

Query: 61  VVHWLSLGG------GGGNSYYSHNQTAVGFPWGVGFLLLLLLF 95
            VHWLS G        G      H   A G PWGV F+L+LLLF
Sbjct: 61  TVHWLSAGSHLSLPLPGSEPGAIHR--AGGSPWGVAFVLVLLLF 102

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BLAST of CmoCh11G008230 vs. TrEMBL
Match: V7CKX4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G181000g PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-12
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1


Query: 9   TFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGGGG 68
           +FS+ WLL     ++ GFL Y +YDA +A+ASE+LQRL+++SPL L+++VHWLS G    
Sbjct: 14  SFSEHWLLMAGTALVCGFLGYIVYDAIMATASELLQRLLVISPLFLIIIVHWLSTGTQIS 73

Query: 69  ----NSYYSHNQTAVGFPWGVGFLLLLLLF 95
                S  S    A G PWGV F+LLLL F
Sbjct: 74  FPMPGSEPSAIHRAGGSPWGVAFVLLLLFF 103

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BLAST of CmoCh11G008230 vs. TrEMBL
Match: I1K3F8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G141600 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-12
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 2   AAYTRSTT---FSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVV 61
           ++ TRST+   FS+ WLL     +I GFL Y +YDA +A+ASE+LQRL+++SPL L+++V
Sbjct: 3   SSVTRSTSGFSFSEIWLLVAATALICGFLGYIVYDAIMATASELLQRLLVISPLFLIIIV 62

Query: 62  HWLSLGGGGG----NSYYSHNQTAVGFPWGVGFLLLLL 93
           HWLS           S  S    A G PWGV F+LLLL
Sbjct: 63  HWLSTASQISFPMPGSEPSAIHRAGGSPWGVAFVLLLL 100

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BLAST of CmoCh11G008230 vs. NCBI nr
Match: gi|778663494|ref|XP_011660097.1| (PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 3.5e-36
Identity = 87/106 (82.08%), Postives = 95/106 (89.62%), Query Frame = 1


Query: 7   STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGG 66
           S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLV+VSPLLLVV VHWLSLG  
Sbjct: 9   SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRD 68

Query: 67  GGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 113
           GG   Y++N +AVGFPWGVGFLLLLLLFPWS AILLL+LYFFFLTN
Sbjct: 69  GG---YNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

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BLAST of CmoCh11G008230 vs. NCBI nr
Match: gi|590582946|ref|XP_007014764.1| (Peripheral-type benzodiazepine receptor-associated protein 1 [Theobroma cacao])

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-14
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 2   AAYTRSTTF--SDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVH 61
           A  +RS+TF  S+QWLL T  +++ GFL Y +YDA +A+ASE+LQRL+++SPLLLVVVVH
Sbjct: 4   APRSRSSTFTPSEQWLLMTATILVCGFLGYVVYDAIMATASELLQRLLVISPLLLVVVVH 63

Query: 62  WLSLGG------GGGNSYYSHNQTAVGFPWGVGFLLLLLLF 95
           WLS G        G      H   A G PWGV  +LLLL F
Sbjct: 64  WLSTGSTLNFPMPGSEPGAIHR--AGGSPWGVASVLLLLFF 102

[Close]

BLAST of CmoCh11G008230 vs. NCBI nr
Match: gi|1012102565|ref|XP_015957774.1| (PREDICTED: uncharacterized protein LOC107481931 [Arachis duranensis])

HSP 1 Score: 82.4 bits (202), Expect = 5.5e-13
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 1


Query: 9   TFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGG--- 68
           +FS+ WL+   + +I GFL Y +YDA +A+ASE+LQRL+++SPLLL++VVHWLS G    
Sbjct: 13  SFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIVVHWLSTGSQLS 72

Query: 69  ---GGGNSYYSHNQTAVGFPWGVGFLLLLLLF 95
               G      H   A G PWGV F+LLLL F
Sbjct: 73  FPMPGSEPGAIHR--AGGSPWGVAFVLLLLFF 102

[Close]

BLAST of CmoCh11G008230 vs. NCBI nr
Match: gi|629122607|gb|KCW87097.1| (hypothetical protein EUGRSUZ_B03629 [Eucalyptus grandis])

HSP 1 Score: 81.6 bits (200), Expect = 9.3e-13
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 1


Query: 1   MAAYTRST----TFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVV 60
           MA  TRS+      SDQW L    +++ G L Y +YDA +A+ASE+LQRL+++SPLLLV+
Sbjct: 1   MAWATRSSIVGFNLSDQWFLTAATIVVGGILGYVVYDAVMATASELLQRLLVISPLLLVI 60

Query: 61  VVHWLSLGG------GGGNSYYSHNQTAVGFPWGVGFLLLLLLF 95
            VHWLS G        G      H   A G PWGV F+L+LLLF
Sbjct: 61  TVHWLSAGSHLSLPLPGSEPGAIHR--AGGSPWGVAFVLVLLLF 102

[Close]

BLAST of CmoCh11G008230 vs. NCBI nr
Match: gi|1009124040|ref|XP_015878859.1| (PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase CMT3-like [Ziziphus jujuba])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 1


Query: 1   MAAYTRSTTFS----DQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVV 60
           MA+ +RS TFS    + WL     ++I GFL Y IYDA +A+ASE+LQRL+++SPLLLV+
Sbjct: 698 MASASRSGTFSFGLSEYWLPVAAMMLICGFLGYVIYDAVMATASELLQRLLVISPLLLVI 757

Query: 61  VVHWLSLGG------GGGNSYYSHNQTAVGFPWGVGFLLLLLLF 95
            VHWLS G        G      H   A G PWGV F+LLLL F
Sbjct: 758 AVHWLSTGSQLSIPIPGSEPGAIHR--AGGSPWGVAFVLLLLFF 799

The following BLAST results are available for this feature:

BLAST of CmoCh11G008230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G008230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M2K2_CUCSA	2.4e-36	82.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G604070 PE=4 SV=1	[more]
A0A061GSJ7_THECC	4.5e-14	52.48	Peripheral-type benzodiazepine receptor-associated protein 1 OS=Theobroma cacao ...	[more]
A0A059D937_EUCGR	6.5e-13	48.08	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03629 PE=4 SV=1	[more]
V7CKX4_PHAVU	4.2e-12	48.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G181000g PE=4 SV=1	[more]
I1K3F8_SOYBN	4.2e-12	47.96	Uncharacterized protein OS=Glycine max GN=GLYMA_05G141600 PE=4 SV=1	[more]

BLAST of CmoCh11G008230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G008230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663494\|ref\|XP_011660097.1\|	3.5e-36	82.08	PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus]	[more]
gi\|590582946\|ref\|XP_007014764.1\|	6.4e-14	52.48	Peripheral-type benzodiazepine receptor-associated protein 1 [Theobroma cacao]	[more]
gi\|1012102565\|ref\|XP_015957774.1\|	5.5e-13	50.00	PREDICTED: uncharacterized protein LOC107481931 [Arachis duranensis]	[more]
gi\|629122607\|gb\|KCW87097.1\|	9.3e-13	48.08	hypothetical protein EUGRSUZ_B03629 [Eucalyptus grandis]	[more]
gi\|1009124040\|ref\|XP_015878859.1\|	1.2e-12	50.00	PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase CMT3-like [Zi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G008230.1	CmoCh11G008230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 1..94 score: 2.2
None	No IPR available	PANTHER	PTHR33306:SF6	SUBFAMILY NOT NAMED	coord: 1..94 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G008230	Cp4.1LG04g11750	Cucurbita pepo (Zucchini)	cmocpeB129
CmoCh11G008230	CsaV3_1G042240	Cucumber (Chinese Long) v3	cmocucB0090
CmoCh11G008230	Carg18004	Silver-seed gourd	carcmoB0241

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G008230	Watermelon (Charleston Gray)	cmowcgB101
CmoCh11G008230	Watermelon (97103) v1	cmowmB088
CmoCh11G008230	Cucurbita pepo (Zucchini)	cmocpeB104
CmoCh11G008230	Bottle gourd (USVL1VR-Ls)	cmolsiB118
CmoCh11G008230	Cucumber (Gy14) v2	cgybcmoB027
CmoCh11G008230	Melon (DHL92) v3.6.1	cmomedB104
CmoCh11G008230	Silver-seed gourd	carcmoB0633
CmoCh11G008230	Silver-seed gourd	carcmoB0704
CmoCh11G008230	Watermelon (97103) v2	cmowmbB100
CmoCh11G008230	Wax gourd	cmowgoB0159
CmoCh11G008230	Cucurbita moschata (Rifu)	cmocmoB044
CmoCh11G008230	Melon (DHL92) v3.5.1	cmomeB097
CmoCh11G008230	Cucumber (Gy14) v1	cgycmoB0396
CmoCh11G008230	Cucurbita maxima (Rimu)	cmacmoB074
CmoCh11G008230	Cucurbita maxima (Rimu)	cmacmoB112
CmoCh11G008230	Wild cucumber (PI 183967)	cmocpiB078
CmoCh11G008230	Cucumber (Chinese Long) v2	cmocuB075