Cp4.1LG04g11750 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g11750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 8637874 .. 8638215 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCTGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGAGGCGGCAGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTGTTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACTAACTGA

mRNA sequence

ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCTGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGAGGCGGCAGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTGTTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACTAACTGA

Coding sequence (CDS)

ATGGCTGCATACACCAGATCAACAACCTTCTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTCCGGATTCTTAGCCTATGCCATTTACGACGCTGCCATCGCCTCGGCCTCCGAGGTGTTACAGAGGCTCGTCATCGTCTCGCCCCTGCTTTTGGTCGTCGTCGTTCACTGGCTGTCCCTCGGAGGCGGCAGCGGCGGAAACAGTTACTACAGCCATAACCAGACGGCTGTGGGATTTCCATGGGGTGTTGGGTTTCTTTTGCTTTTGCTTCTGTTTCCATGGAGTGCTGCCATTCTTCTTCTTATGCTTTATTTCTTCTTTCTTACTAACTGA

Protein sequence

MAAYTRSTTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGGSGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN
Homology
[Close]
BLAST of Cp4.1LG04g11750 vs. TrEMBL
Match: A0A0A0M2K2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-35
Identity = 86/107 (80.37%), Postives = 94/107 (87.85%), Query Frame = 1 

Query: 7   STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGG 66
           S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLV+VSPLLLVV VHWLSLG  
Sbjct: 9   SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRD 68

Query: 67  SGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 114
            G    Y++N +AVGFPWGVGFLLLLLLFPWS AILLL+LYFFFLTN
Sbjct: 69  GG----YNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]
BLAST of Cp4.1LG04g11750 vs. TrEMBL
Match: A0A061GSJ7_THECC (Peripheral-type benzodiazepine receptor-associated protein 1 OS=Theobroma cacao GN=TCM_040268 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-14
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 1 

Query: 2   AAYTRSTTF--SDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVH 61
           A  +RS+TF  S+QWLL T  +++ GFL Y +YDA +A+ASE+LQRL+++SPLLLVVVVH
Sbjct: 4   APRSRSSTFTPSEQWLLMTATILVCGFLGYVVYDAIMATASELLQRLLVISPLLLVVVVH 63

Query: 62  WLSLGG-------GSGGNSYYSHNQTAVGFPWGVGFLLLLLLF 96
           WLS G        GS   + +     A G PWGV  +LLLL F
Sbjct: 64  WLSTGSTLNFPMPGSEPGAIH----RAGGSPWGVASVLLLLFF 102

[Close]
BLAST of Cp4.1LG04g11750 vs. TrEMBL
Match: A0A059D937_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03629 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-13
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1 

Query: 1   MAAYTRST----TFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVV 60
           MA  TRS+      SDQW L    +++ G L Y +YDA +A+ASE+LQRL+++SPLLLV+
Sbjct: 1   MAWATRSSIVGFNLSDQWFLTAATIVVGGILGYVVYDAVMATASELLQRLLVISPLLLVI 60

Query: 61  VVHWLSLGG-------GSGGNSYYSHNQTAVGFPWGVGFLLLLLLF 96
            VHWLS G        GS   + +     A G PWGV F+L+LLLF
Sbjct: 61  TVHWLSAGSHLSLPLPGSEPGAIH----RAGGSPWGVAFVLVLLLF 102

[Close]
BLAST of Cp4.1LG04g11750 vs. TrEMBL
Match: V7CKX4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G181000g PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-12
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1 

Query: 9   TFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGGSG 68
           +FS+ WLL     ++ GFL Y +YDA +A+ASE+LQRL+++SPL L+++VHWLS G    
Sbjct: 14  SFSEHWLLMAGTALVCGFLGYIVYDAIMATASELLQRLLVISPLFLIIIVHWLSTGTQIS 73

Query: 69  ---GNSYYSHNQTAVGFPWGVGFLLLLLLF 96
                S  S    A G PWGV F+LLLL F
Sbjct: 74  FPMPGSEPSAIHRAGGSPWGVAFVLLLLFF 103

[Close]
BLAST of Cp4.1LG04g11750 vs. TrEMBL
Match: I1K3F8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G141600 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-12
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 1 

Query: 2   AAYTRSTT---FSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVV 61
           ++ TRST+   FS+ WLL     +I GFL Y +YDA +A+ASE+LQRL+++SPL L+++V
Sbjct: 3   SSVTRSTSGFSFSEIWLLVAATALICGFLGYIVYDAIMATASELLQRLLVISPLFLIIIV 62

Query: 62  HWLSLGGGSG---GNSYYSHNQTAVGFPWGVGFLLLLL 94
           HWLS           S  S    A G PWGV F+LLLL
Sbjct: 63  HWLSTASQISFPMPGSEPSAIHRAGGSPWGVAFVLLLL 100

[Close]
BLAST of Cp4.1LG04g11750 vs. NCBI nr
Match: gi|778663494|ref|XP_011660097.1| (PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-35
Identity = 86/107 (80.37%), Postives = 94/107 (87.85%), Query Frame = 1 

Query: 7   STTFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGGG 66
           S +FSDQWLLATIALII GFLAYA+YDAA+ASASEV QRLV+VSPLLLVV VHWLSLG  
Sbjct: 9   SLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRD 68

Query: 67  SGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLTN 114
            G    Y++N +AVGFPWGVGFLLLLLLFPWS AILLL+LYFFFLTN
Sbjct: 69  GG----YNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]
BLAST of Cp4.1LG04g11750 vs. NCBI nr
Match: gi|590582946|ref|XP_007014764.1| (Peripheral-type benzodiazepine receptor-associated protein 1 [Theobroma cacao])

HSP 1 Score: 85.1 bits (209), Expect = 8.5e-14
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 1 

Query: 2   AAYTRSTTF--SDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVH 61
           A  +RS+TF  S+QWLL T  +++ GFL Y +YDA +A+ASE+LQRL+++SPLLLVVVVH
Sbjct: 4   APRSRSSTFTPSEQWLLMTATILVCGFLGYVVYDAIMATASELLQRLLVISPLLLVVVVH 63

Query: 62  WLSLGG-------GSGGNSYYSHNQTAVGFPWGVGFLLLLLLF 96
           WLS G        GS   + +     A G PWGV  +LLLL F
Sbjct: 64  WLSTGSTLNFPMPGSEPGAIH----RAGGSPWGVASVLLLLFF 102

[Close]
BLAST of Cp4.1LG04g11750 vs. NCBI nr
Match: gi|1012102565|ref|XP_015957774.1| (PREDICTED: uncharacterized protein LOC107481931 [Arachis duranensis])

HSP 1 Score: 82.4 bits (202), Expect = 5.5e-13
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1 

Query: 9   TFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVVVVHWLSLGG--- 68
           +FS+ WL+   + +I GFL Y +YDA +A+ASE+LQRL+++SPLLL++VVHWLS G    
Sbjct: 13  SFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIVVHWLSTGSQLS 72

Query: 69  ----GSGGNSYYSHNQTAVGFPWGVGFLLLLLLF 96
               GS   + +     A G PWGV F+LLLL F
Sbjct: 73  FPMPGSEPGAIH----RAGGSPWGVAFVLLLLFF 102

[Close]
BLAST of Cp4.1LG04g11750 vs. NCBI nr
Match: gi|629122607|gb|KCW87097.1| (hypothetical protein EUGRSUZ_B03629 [Eucalyptus grandis])

HSP 1 Score: 81.6 bits (200), Expect = 9.4e-13
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1 

Query: 1   MAAYTRST----TFSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVV 60
           MA  TRS+      SDQW L    +++ G L Y +YDA +A+ASE+LQRL+++SPLLLV+
Sbjct: 1   MAWATRSSIVGFNLSDQWFLTAATIVVGGILGYVVYDAVMATASELLQRLLVISPLLLVI 60

Query: 61  VVHWLSLGG-------GSGGNSYYSHNQTAVGFPWGVGFLLLLLLF 96
            VHWLS G        GS   + +     A G PWGV F+L+LLLF
Sbjct: 61  TVHWLSAGSHLSLPLPGSEPGAIH----RAGGSPWGVAFVLVLLLF 102

[Close]
BLAST of Cp4.1LG04g11750 vs. NCBI nr
Match: gi|1009124040|ref|XP_015878859.1| (PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase CMT3-like [Ziziphus jujuba])

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 1   MAAYTRSTTFS----DQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLVV 60
           MA+ +RS TFS    + WL     ++I GFL Y IYDA +A+ASE+LQRL+++SPLLLV+
Sbjct: 698 MASASRSGTFSFGLSEYWLPVAAMMLICGFLGYVIYDAVMATASELLQRLLVISPLLLVI 757

Query: 61  VVHWLSLGG-------GSGGNSYYSHNQTAVGFPWGVGFLLLLLLF 96
            VHWLS G        GS   + +     A G PWGV F+LLLL F
Sbjct: 758 AVHWLSTGSQLSIPIPGSEPGAIH----RAGGSPWGVAFVLLLLFF 799

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g11750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g11750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M2K2_CUCSA1.2e-3580.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G604070 PE=4 SV=1[more]
A0A061GSJ7_THECC5.9e-1451.46Peripheral-type benzodiazepine receptor-associated protein 1 OS=Theobroma cacao ... [more]
A0A059D937_EUCGR6.5e-1347.17Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03629 PE=4 SV=1[more]
V7CKX4_PHAVU3.2e-1248.89Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G181000g PE=4 SV=1[more]
I1K3F8_SOYBN3.2e-1247.96Uncharacterized protein OS=Glycine max GN=GLYMA_05G141600 PE=4 SV=1[more]
BLAST of Cp4.1LG04g11750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g11750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778663494|ref|XP_011660097.1|1.8e-3580.37PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus][more]
gi|590582946|ref|XP_007014764.1|8.5e-1451.46Peripheral-type benzodiazepine receptor-associated protein 1 [Theobroma cacao][more]
gi|1012102565|ref|XP_015957774.1|5.5e-1348.94PREDICTED: uncharacterized protein LOC107481931 [Arachis duranensis][more]
gi|629122607|gb|KCW87097.1|9.4e-1347.17hypothetical protein EUGRSUZ_B03629 [Eucalyptus grandis][more]
gi|1009124040|ref|XP_015878859.1|1.2e-1249.06PREDICTED: LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase CMT3-like [Zi... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g11750.1Cp4.1LG04g11750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306FAMILY NOT NAMEDcoord: 1..95
score: 6.4
NoneNo IPR availablePANTHERPTHR33306:SF6SUBFAMILY NOT NAMEDcoord: 1..95
score: 6.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g11750CmoCh11G008230Cucurbita moschata (Rifu)cmocpeB129
Cp4.1LG04g11750CsaV3_1G042240Cucumber (Chinese Long) v3cpecucB0813
Cp4.1LG04g11750Carg18004Silver-seed gourdcarcpeB0248
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g11750Cucurbita pepo (Zucchini)cpecpeB363
Cp4.1LG04g11750Cucumber (Gy14) v1cgycpeB0385
Cp4.1LG04g11750Cucurbita maxima (Rimu)cmacpeB086
Cp4.1LG04g11750Cucurbita maxima (Rimu)cmacpeB153
Cp4.1LG04g11750Cucurbita moschata (Rifu)cmocpeB062
Cp4.1LG04g11750Wild cucumber (PI 183967)cpecpiB655
Cp4.1LG04g11750Cucumber (Chinese Long) v2cpecuB652
Cp4.1LG04g11750Bottle gourd (USVL1VR-Ls)cpelsiB563
Cp4.1LG04g11750Watermelon (Charleston Gray)cpewcgB599
Cp4.1LG04g11750Watermelon (97103) v1cpewmB642
Cp4.1LG04g11750Melon (DHL92) v3.5.1cpemeB620
Cp4.1LG04g11750Cucumber (Gy14) v2cgybcpeB125
Cp4.1LG04g11750Melon (DHL92) v3.6.1cpemedB733
Cp4.1LG04g11750Silver-seed gourdcarcpeB0656
Cp4.1LG04g11750Wax gourdcpewgoB0882