Cucsa.142880 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.142880
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPeripheral-type benzodiazepine receptor-associated protein 1
Locationscaffold01079 : 1114808 .. 1115129 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACTCTTCAAGCTTGAGCTTTTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTTTGGATTCTTGGCTTATGCCGTGTACGATGCCGCCGTTGCCTCGGCATCAGAGGTATTTCAGAGGCTCGTCGTTGTTTCGCCGTTGCTTTTGGTTGTTGCCGTTCACTGGCTATCTCTCGGCCGCGACGGAGGATATAACAACAACCATTCAGCTGTGGGATTCCCATGGGGAGTTGGGTTTCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGTTGCCATTTTGTTGCTTCTACTTTATTTCTTCTTTCTTACTAATTGA

mRNA sequence

AAACTCTTCAAGCTTGAGCTTTTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTTTGGATTCTTGGCTTATGCCGTGTACGATGCCGCCGTTGCCTCGGCATCAGAGGTATTTCAGAGGCTCGTCGTTGTTTCGCCGTTGCTTTTGGTTGTTGCCGTTCACTGGCTATCTCTCGGCCGCGACGGAGGATATAACAACAACCATTCAGCTGTGGGATTCCCATGGGGAGTTGGGTTTCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGTTGCCATTTTGTTGCTTCTACTTTATTTCTTCTTTCTTACTAATTGA

Coding sequence (CDS)

AAACTCTTCAAGCTTGAGCTTTTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTTTGGATTCTTGGCTTATGCCGTGTACGATGCCGCCGTTGCCTCGGCATCAGAGGTATTTCAGAGGCTCGTCGTTGTTTCGCCGTTGCTTTTGGTTGTTGCCGTTCACTGGCTATCTCTCGGCCGCGACGGAGGATATAACAACAACCATTCAGCTGTGGGATTCCCATGGGGAGTTGGGTTTCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGTTGCCATTTTGTTGCTTCTACTTTATTTCTTCTTTCTTACTAATTGA

Protein sequence

NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRDGGYNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN*
Homology
[Close]
BLAST of Cucsa.142880 vs. TrEMBL
Match: A0A0A0M2K2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.0e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL 60
           NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL
Sbjct: 6   NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL 65

Query: 61  GRDGGYNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 107
           GRDGGYNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN
Sbjct: 66  GRDGGYNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]
BLAST of Cucsa.142880 vs. TrEMBL
Match: A0A061GSJ7_THECC (Peripheral-type benzodiazepine receptor-associated protein 1 OS=Theobroma cacao GN=TCM_040268 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 1 

Query: 2   SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLG 61
           SS+ + S+QWLL T  +++ GFL Y VYDA +A+ASE+ QRL+V+SPLLLVV VHWLS G
Sbjct: 9   SSTFTPSEQWLLMTATILVCGFLGYVVYDAIMATASELLQRLLVISPLLLVVVVHWLSTG 68

Query: 62  RDGGY-------NNNHSAVGFPWGVGFLLLLLLF 89
               +          H A G PWGV  +LLLL F
Sbjct: 69  STLNFPMPGSEPGAIHRAGGSPWGVASVLLLLFF 102

[Close]
BLAST of Cucsa.142880 vs. TrEMBL
Match: B9GYI7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21490g PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.0e-16
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1 

Query: 3   SSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGR 62
           ++ + S+QW+L    + + GFL Y VYDA +A+ASE+ QRL+V+SPL+L+++VHWLS G 
Sbjct: 10  TNFTLSEQWVLMAATIFVCGFLGYVVYDAVMATASEMLQRLLVISPLILIISVHWLSAGS 69

Query: 63  DGGY-------NNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYF 102
                         H A G PWGV F+LLLL F  S    LL L F
Sbjct: 70  QFSIPIPGSEPGAIHRAGGSPWGVAFVLLLLFFLISYQPSLLGLIF 115

[Close]
BLAST of Cucsa.142880 vs. TrEMBL
Match: V7CKX4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G181000g PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.0e-16
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 1 

Query: 1   NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL 60
           + S  SFS+ WLL     ++ GFL Y VYDA +A+ASE+ QRL+V+SPL L++ VHWLS 
Sbjct: 9   SGSGFSFSEHWLLMAGTALVCGFLGYIVYDAIMATASELLQRLLVISPLFLIIIVHWLST 68

Query: 61  GRDGGY-------NNNHSAVGFPWGVGFLLLLLLF 89
           G    +       +  H A G PWGV F+LLLL F
Sbjct: 69  GTQISFPMPGSEPSAIHRAGGSPWGVAFVLLLLFF 103

[Close]
BLAST of Cucsa.142880 vs. TrEMBL
Match: A0A059D937_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03629 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-15
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = 1 

Query: 6   SFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGR--- 65
           + SDQW L    +++ G L Y VYDA +A+ASE+ QRL+V+SPLLLV+ VHWLS G    
Sbjct: 13  NLSDQWFLTAATIVVGGILGYVVYDAVMATASELLQRLLVISPLLLVITVHWLSAGSHLS 72

Query: 66  ----DGGYNNNHSAVGFPWGVGFLLLLLLF 89
                      H A G PWGV F+L+LLLF
Sbjct: 73  LPLPGSEPGAIHRAGGSPWGVAFVLVLLLF 102

[Close]
BLAST of Cucsa.142880 vs. NCBI nr
Match: gi|778663494|ref|XP_011660097.1| (PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 5.7e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

Query: 1   NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL 60
           NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL
Sbjct: 6   NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL 65

Query: 61  GRDGGYNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 107
           GRDGGYNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN
Sbjct: 66  GRDGGYNNNHSAVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]
BLAST of Cucsa.142880 vs. NCBI nr
Match: gi|1012102565|ref|XP_015957774.1| (PREDICTED: uncharacterized protein LOC107481931 [Arachis duranensis])

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 1 

Query: 1   NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL 60
           +SS  SFS+ WL+   + +I GFL Y VYDA +A+ASE+ QRL+V+SPLLL++ VHWLS 
Sbjct: 8   SSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIVVHWLST 67

Query: 61  GRDGGY-------NNNHSAVGFPWGVGFLLLLLLF 89
           G    +          H A G PWGV F+LLLL F
Sbjct: 68  GSQLSFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 102

[Close]
BLAST of Cucsa.142880 vs. NCBI nr
Match: gi|951006072|ref|XP_014508347.1| (PREDICTED: uncharacterized protein LOC106767898 [Vigna radiata var. radiata])

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1 

Query: 1   NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL 60
           + S LSFS++WLL     +I GF+ Y VYDA +A+ASE+ QRL+V+SPLLL++ VHWLS 
Sbjct: 8   SGSGLSFSEKWLLMAGTGLICGFVGYIVYDAIMATASELVQRLLVISPLLLIIIVHWLST 67

Query: 61  GRDGGY-------NNNHSAVGFPWGVGFLLLLLLF 89
           G    +       +  H A G PWGV FLLLLL F
Sbjct: 68  GTQISFPMPGSEPSAIHRAGGSPWGVAFLLLLLFF 102

[Close]
BLAST of Cucsa.142880 vs. NCBI nr
Match: gi|590582946|ref|XP_007014764.1| (Peripheral-type benzodiazepine receptor-associated protein 1 [Theobroma cacao])

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-16
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 1 

Query: 2   SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLG 61
           SS+ + S+QWLL T  +++ GFL Y VYDA +A+ASE+ QRL+V+SPLLLVV VHWLS G
Sbjct: 9   SSTFTPSEQWLLMTATILVCGFLGYVVYDAIMATASELLQRLLVISPLLLVVVVHWLSTG 68

Query: 62  RDGGY-------NNNHSAVGFPWGVGFLLLLLLF 89
               +          H A G PWGV  +LLLL F
Sbjct: 69  STLNFPMPGSEPGAIHRAGGSPWGVASVLLLLFF 102

[Close]
BLAST of Cucsa.142880 vs. NCBI nr
Match: gi|502141601|ref|XP_004504560.1| (PREDICTED: uncharacterized protein LOC101506213 [Cicer arietinum])

HSP 1 Score: 92.0 bits (227), Expect = 6.6e-16
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1 

Query: 1   NSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSL 60
           ++SS SFS+ WLL     +I G + Y +YDA +A+ASE+ QRL+V+SPLLL++ VHWLS 
Sbjct: 9   SASSFSFSEHWLLMVATALICGIVGYIIYDAIMATASELLQRLLVISPLLLIILVHWLST 68

Query: 61  GRDGGY-------NNNHSAVGFPWGVGFLLLLLLF 89
           G    +       +  H A G PWGV F+L+LL F
Sbjct: 69  GSQLNFPIPGSEPSAIHRAGGSPWGVAFVLMLLFF 103

The following BLAST results are available for this feature:
BLAST of Cucsa.142880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M2K2_CUCSA4.0e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G604070 PE=4 SV=1[more]
A0A061GSJ7_THECC1.6e-1652.13Peripheral-type benzodiazepine receptor-associated protein 1 OS=Theobroma cacao ... [more]
B9GYI7_POPTR6.0e-1645.28Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s21490g PE=4 SV=1[more]
V7CKX4_PHAVU6.0e-1648.42Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G181000g PE=4 SV=1[more]
A0A059D937_EUCGR2.3e-1550.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03629 PE=4 SV=1[more]
BLAST of Cucsa.142880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778663494|ref|XP_011660097.1|5.7e-52100.00PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus][more]
gi|1012102565|ref|XP_015957774.1|2.0e-1750.53PREDICTED: uncharacterized protein LOC107481931 [Arachis duranensis][more]
gi|951006072|ref|XP_014508347.1|1.7e-1651.58PREDICTED: uncharacterized protein LOC106767898 [Vigna radiata var. radiata][more]
gi|590582946|ref|XP_007014764.1|2.3e-1652.13Peripheral-type benzodiazepine receptor-associated protein 1 [Theobroma cacao][more]
gi|502141601|ref|XP_004504560.1|6.6e-1647.37PREDICTED: uncharacterized protein LOC101506213 [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.142880.1Cucsa.142880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306FAMILY NOT NAMEDcoord: 2..88
score: 1.7
NoneNo IPR availablePANTHERPTHR33306:SF6SUBFAMILY NOT NAMEDcoord: 2..88
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.142880Cla004758Watermelon (97103) v1cgywmB251
Cucsa.142880Csa1G604070Cucumber (Chinese Long) v2cgycuB205
Cucsa.142880ClCG03G013980Watermelon (Charleston Gray)cgywcgB242
Cucsa.142880CSPI01G29780Wild cucumber (PI 183967)cgycpiB208
Cucsa.142880CsaV3_1G042240Cucumber (Chinese Long) v3cgycucB213
Cucsa.142880Cla97C03G064180Watermelon (97103) v2cgywmbB241
Cucsa.142880Bhi02G001381Wax gourdcgywgoB282
Cucsa.142880Carg18004Silver-seed gourdcarcgyB0212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.142880Wax gourdcgywgoB278
Cucsa.142880Cucumber (Gy14) v1cgycgyB010
Cucsa.142880Cucurbita maxima (Rimu)cgycmaB0395
Cucsa.142880Cucurbita maxima (Rimu)cgycmaB0396
Cucsa.142880Cucurbita maxima (Rimu)cgycmaB0398
Cucsa.142880Cucurbita maxima (Rimu)cgycmaB0399
Cucsa.142880Cucurbita moschata (Rifu)cgycmoB0395
Cucsa.142880Cucurbita moschata (Rifu)cgycmoB0396
Cucsa.142880Cucurbita moschata (Rifu)cgycmoB0398
Cucsa.142880Cucurbita moschata (Rifu)cgycmoB0399
Cucsa.142880Wild cucumber (PI 183967)cgycpiB211
Cucsa.142880Cucumber (Chinese Long) v2cgycuB208
Cucsa.142880Melon (DHL92) v3.5.1cgymeB237
Cucsa.142880Melon (DHL92) v3.5.1cgymeB238
Cucsa.142880Cucurbita pepo (Zucchini)cgycpeB0382
Cucsa.142880Cucurbita pepo (Zucchini)cgycpeB0385
Cucsa.142880Cucurbita pepo (Zucchini)cgycpeB0386
Cucsa.142880Bottle gourd (USVL1VR-Ls)cgylsiB228
Cucsa.142880Bottle gourd (USVL1VR-Ls)cgylsiB230
Cucsa.142880Melon (DHL92) v3.6.1cgymedB234
Cucsa.142880Melon (DHL92) v3.6.1cgymedB235
Cucsa.142880Silver-seed gourdcarcgyB0539
Cucsa.142880Silver-seed gourdcarcgyB0599
Cucsa.142880Silver-seed gourdcarcgyB1039
Cucsa.142880Cucumber (Chinese Long) v3cgycucB216