Carg17749 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17749
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glycerol-3-phosphate dehydrogenase [NAD(+)]
Location	Cucurbita_argyrosperma_scaffold_082 : 346313 .. 349154 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGAAAGAAGGCAAGAGAGGAACAAAAATGTCATTGGTAGACTACGCTTCGTCGGACGACGACGAGACGGCGGCGGAGGAGGAGGAGGAGGAGCAAAATCGGAAGAAACCGGAAGACCGCACCACTGAGGAGCCTCAATTCCCCAACCGAGAGCCGAGGTCTCAATCTCACCCCGTCAACCAGTAAGTTTTCTTCCATTTCTTCAGATTTTTTCTAGTTCCCAAGCGGGAGGGCTCCAATTTCAATTTCTTTTTTGCTTTTTCTCTATTCCAATCGAAGTTCAATCATTTTCCTGACCTTTTTTTTCACAAAGCGTATAGGTTTTGTCTTCGAAGTGAATGATGTGTTGGTTGTATACCAGTTCTTATTTTTTGTGTTCCATCTTTTAGGGTTATTGTTGTTGTTAGATTAACTGGGAGTAATGGAGTTTGTTGTGCTTCCAGATGTTCTTGACTGGCTTTTTAAAGATCGTTATTGTGGTCATACTGTTTATTTTTTTTGGTTTACTATGGAATTTTGCGAGTTCGAAATGGCTGCTACGTAGGTTTAGGGAATTCTTTAGCTGTTGATTTCATTACCTTGGAACTAAAGATTTGGTTTATTTTGGTTGGTATTCTGGTGTGTGTGATTTATTTCCTTGTGATTTGCACTGTAGGCCCATTCTTAAGCCAAAACAGCCATCTGAAACTAACGAGGATTCTTCTGTGCCTTCGGTTGAGCTTCCTGATGCTTCTCTGCTATTGAATTCTCCTACTTCTTCCAGTCTTCTTAGTGGTAGCGATCACTCTTCTCGAGTGGCAGCAGCCATGGCTGCCAATGCATCACGTAAGAGAGAAACAAATGTTTTGGGATCTTCTCTTCCCCGGAGTAAAGTTCCACGATCGAATTTGCCTCACTCAAAGAATGTTCCAGAGACTGTAGGGCGTTTGTTGGTTCCACCTCAGCTTACTGGAAGGTTCGTTCTATTATATTCTCTCCTTCTTTTCCACTTGTTTATGCTAATATTTGGATTCACTTAAGGTCAATGACATTATTCCCTGAATAAGTGATACTGCAAGACATTGATAATTGGATTTGATGCATTTATATATAGTTTATGAAGTCTGCACTAGGCGATGAGAATCGAATCATTTCGAAATCATGTACATACAGATGATTGCATTGGCATAGATATGATTCTAAGTTTATTTCTTTCCCGTGAAAGAGCTCTCTCAGTCTACCAATTAAAACCTATGATTCTAAGTTTAGCACCCACGACATAATGGTAATGTAGTAAGAAGTTAGGTATAAGATAAACATGGCTTTTTGTTTTTGGCCATGAATTGTTTTGTTAATACACTCGGTTCTATGAAAGTAAATGCATCGATCGGTGTTTGTCATCATCATTTCCTGCCTTGCAAGAACTTTAAAGTCAAATGTGACTCAGATTCCGTCCGATGTTATTGAGCCTGATATCAAGCTGCAGTTTCTTCTATTACAAATGTAGTTAACAGTAGAGTTGAGTTTCATATTAGTTAGTCAGTGGTTTGCTTGGATTAGGATTCGGTTTTCCATTTGGCAGTGAAACTAGTGGGTTTCATATATATTTCATTCCTTCTTTTGCTTATTAGAACAAGATATACAATCTTCTATATGTGGGGTATAATTGATTTGGGGTTTCTAGTTCAGAGGATGGAGCAGTTCCTTGCCAATGCCTTGCTATTGCTCCAAGTAACCGTAACTTCTTTAAGATATTACAATTTCACTGATTTTAATAGGAAAAAAATTTGACAGAAGAATCTTTCAACTGGTACGATGCTCTTTTCTTTGTTGTTCTTATTGCTAGTTTTTGTGTCACTGTTCTTCAATATGCTGGATGTGCTGAAGGCCTCCAGCAAGTGTGATTCTATCGCCTCAAGAACTTAGCATAGAGTTAGTGCATGTCATTACTCTTGCAAATATAACCAGCATGTGAGATCCCACATCAGTTGGAGGGGAACGACACCAAGGGTGTCGAAGCCTCTCCCTAGTAGACACATTTTAAAACTTTGAGGTTGACAGCGATACGTAACGGGCCAAATCGGACAATATCTGCTAGCAGTAGACTTGAACTTTTACAAATGGTATTAGAGCCAGACACCGGGCAGTGTGCCAGCGAGGACGCTGGCCCCCAAGAGGAGTGGACTGTGAAATCCCACATTGGTTGGAGAGGGGAACAATACCAAGGGTGTGGAAACCTCTCCCTAATAGACGTATTTTAAAACCGTGAGGCCGACGGCAATACGTAATGTGCCAAAGTTGACAATATCTACTAGCGGTGGGCTTAGGCTTAGGCTTAGGCTGTTACAATGTATTTTCTATTTTGTTTAGAATTTGTGATGAATTGTGATTGGAATCCTGAACTTGTTTTGCGTTTGGCAGGAGTAACATTGTCACTGAAGATATAAGCAAGTTGTTTGTGAAAAAGTCGGCCAAGCCCTCATAGAGGATTTCTTTCTAGAGTTGTGTTGGTTGTTGCAGCTTTCATTAATTAATAGTTTGTAGAAGTTTGAGGTTTGGTCTAATGCACTTTGTAGAATGTGAAGAATAGTGCACTCATATTTACTACCCAAAACGAAGGGGGTGGGGGGAAATGACCCAAGTTCAGATGCTTCTCTTCTATCTATCGTTTCTCAGGAATTGCAATGGTTTGTGGGTTATCTGTGGTACGTGAATTTTCCCCCCTCGAAAAACTAATGGGGCATAGTTTTGTTCTGAATCTTTTTCCCTTGTTCTTGTTTAATTTAGGTTAAGATATCATTTTTGTCTCGTCTTCGTTCCCTTGTTTGTTCTTGTAATGTTAGTTTAAATCTAATTTTGTTG

mRNA sequence

GTCGAAAGAAGGCAAGAGAGGAACAAAAATGTCATTGGTAGACTACGCTTCGTCGGACGACGACGAGACGGCGGCGGAGGAGGAGGAGGAGGAGCAAAATCGGAAGAAACCGGAAGACCGCACCACTGAGGAGCCTCAATTCCCCAACCGAGAGCCGAGGTCTCAATCTCACCCCGTCAACCAGCCCATTCTTAAGCCAAAACAGCCATCTGAAACTAACGAGGATTCTTCTGTGCCTTCGGTTGAGCTTCCTGATGCTTCTCTGCTATTGAATTCTCCTACTTCTTCCAGTCTTCTTAGTGGTAGCGATCACTCTTCTCGAGTGGCAGCAGCCATGGCTGCCAATGCATCACGTAAGAGAGAAACAAATGTTTTGGGATCTTCTCTTCCCCGGAGTAAAGTTCCACGATCGAATTTGCCTCACTCAAAGAATGTTCCAGAGACTGTAGGGCGTTTGTTGGTTCCACCTCAGCTTACTGGAAGGAGTAACATTGTCACTGAAGATATAAGCAAGTTGTTTGTGAAAAAGTCGGCCAAGCCCTCATAGAGGATTTCTTTCTAGAGTTGTGTTGGTTGTTGCAGCTTTCATTAATTAATAGTTTGTAGAAGTTTGAGGTTTGGTCTAATGCACTTTGTAGAATGTGAAGAATAGTGCACTCATATTTACTACCCAAAACGAAGGGGGTGGGGGGAAATGACCCAAGTTCAGATGCTTCTCTTCTATCTATCGTTTCTCAGGAATTGCAATGGTTTGTGGGTTATCTGTGGTACGTGAATTTTCCCCCCTCGAAAAACTAATGGGGCATAGTTTTGTTCTGAATCTTTTTCCCTTGTTCTTGTTTAATTTAGGTTAAGATATCATTTTTGTCTCGTCTTCGTTCCCTTGTTTGTTCTTGTAATGTTAGTTTAAATCTAATTTTGTTG

Coding sequence (CDS)

ATGTCATTGGTAGACTACGCTTCGTCGGACGACGACGAGACGGCGGCGGAGGAGGAGGAGGAGGAGCAAAATCGGAAGAAACCGGAAGACCGCACCACTGAGGAGCCTCAATTCCCCAACCGAGAGCCGAGGTCTCAATCTCACCCCGTCAACCAGCCCATTCTTAAGCCAAAACAGCCATCTGAAACTAACGAGGATTCTTCTGTGCCTTCGGTTGAGCTTCCTGATGCTTCTCTGCTATTGAATTCTCCTACTTCTTCCAGTCTTCTTAGTGGTAGCGATCACTCTTCTCGAGTGGCAGCAGCCATGGCTGCCAATGCATCACGTAAGAGAGAAACAAATGTTTTGGGATCTTCTCTTCCCCGGAGTAAAGTTCCACGATCGAATTTGCCTCACTCAAAGAATGTTCCAGAGACTGTAGGGCGTTTGTTGGTTCCACCTCAGCTTACTGGAAGGAGTAACATTGTCACTGAAGATATAAGCAAGTTGTTTGTGAAAAAGTCGGCCAAGCCCTCATAG

Protein sequence

MSLVDYASSDDDETAAEEEEEEQNRKKPEDRTTEEPQFPNREPRSQSHPVNQPILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSLPRSKVPRSNLPHSKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS

Homology

[Close]

BLAST of Carg17749 vs. NCBI nr
Match: XP_023517928.1 (uncharacterized protein LOC111781514 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSLVDYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPNREPRSQSHPVNQPILKPKQP 60
           MSLVDYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPN+EPRSQSHPVNQPILKPKQP
Sbjct: 1   MSLVDYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPNQEPRSQSHPVNQPILKPKQP 60

Query: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120
           SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL
Sbjct: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120

Query: 121 PRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           PRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 PRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 172

[Close]

BLAST of Carg17749 vs. NCBI nr
Match: XP_022990875.1 (uncharacterized protein LOC111487632 isoform X1 [Cucurbita maxima])

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 36  PQFPNREPRSQSHPVNQPILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDH 95
           PQFPN+EPRSQSHPVNQPILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDH
Sbjct: 39  PQFPNQEPRSQSHPVNQPILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDH 98

Query: 96  SSRVAAAMAANASRKRETNVLGSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNI 155
           SSRVAAAMAANASRKRETNVLGSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNI
Sbjct: 99  SSRVAAAMAANASRKRETNVLGSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNI 158

Query: 156 VTEDISKLFVKKSAKPS 173
           VTEDISKLFVKKSAKPS
Sbjct: 159 VTEDISKLFVKKSAKPS 175

[Close]

BLAST of Carg17749 vs. NCBI nr
Match: XP_022964179.1 (uncharacterized protein LOC111464275 isoform X1 [Cucurbita moschata])

HSP 1 Score: 226.1 bits (575), Expect = 9.1e-56
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 36  PQFPNREPRSQSHPVNQPILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDH 95
           PQFPN+EPRSQSHPVNQ ILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDH
Sbjct: 38  PQFPNQEPRSQSHPVNQSILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDH 97

Query: 96  SSRVAAAMAANASRKRETNVLGSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNI 155
           SSRVAAAMAANASRKRETNVLGSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNI
Sbjct: 98  SSRVAAAMAANASRKRETNVLGSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNI 157

Query: 156 VTEDISKLFVKKSAKPS 173
           VTEDISKLFVKKSAKPS
Sbjct: 158 VTEDISKLFVKKSAKPS 174

[Close]

BLAST of Carg17749 vs. NCBI nr
Match: XP_023517937.1 (uncharacterized protein LOC111781514 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.1 bits (531), Expect = 1.2e-50
Identity = 163/172 (94.77%), Postives = 164/172 (95.35%), Query Frame = 0


Query: 1   MSLVDYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPNREPRSQSHPVNQPILKPKQP 60
           MSLVDYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPN+EPR        PILKPKQP
Sbjct: 1   MSLVDYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPNQEPR--------PILKPKQP 60

Query: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120
           SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL
Sbjct: 61  SETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSSL 120

Query: 121 PRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
           PRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS
Sbjct: 121 PRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 164

[Close]

BLAST of Carg17749 vs. NCBI nr
Match: XP_022990876.1 (uncharacterized protein LOC111487632 isoform X2 [Cucurbita maxima])

HSP 1 Score: 206.1 bits (523), Expect = 9.8e-50
Identity = 128/137 (93.43%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 36  PQFPNREPRSQSHPVNQPILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDH 95
           PQFPN+EPR        PILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDH
Sbjct: 39  PQFPNQEPR--------PILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDH 98

Query: 96  SSRVAAAMAANASRKRETNVLGSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNI 155
           SSRVAAAMAANASRKRETNVLGSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNI
Sbjct: 99  SSRVAAAMAANASRKRETNVLGSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNI 158

Query: 156 VTEDISKLFVKKSAKPS 173
           VTEDISKLFVKKSAKPS
Sbjct: 159 VTEDISKLFVKKSAKPS 167

[Close]

BLAST of Carg17749 vs. TAIR10
Match: AT5G13470.1 (unknown protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-18
Identity = 61/126 (48.41%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 43  PRSQSHPVNQPILKPKQPSETNEDSSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAA 102
           P++Q   V+     P +     +D SV   +LPDA LLL SPT +  ++G DH+S VAAA
Sbjct: 24  PQTQKRLVSPAQSFPPKRQRFEQDESVE--KLPDALLLLESPTLAQ-VTGGDHASVVAAA 83

Query: 103 MAANASRKRETNVLGSSLP-RXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDIS 162
           MA +A RKR+ +   SSLP R           KN PET+G +LVPPQL GRSN+ TED+S
Sbjct: 84  MAESALRKRDLSGNASSLPRRPKLPRGNLPHSKNYPETLGNVLVPPQLKGRSNVATEDMS 143

Query: 163 KLFVKK 168
           +LFVKK
Sbjct: 144 RLFVKK 146

[Close]

BLAST of Carg17749 vs. TrEMBL
Match: tr|A0A1S3CP27|A0A1S3CP27_CUCME (uncharacterized protein LOC103503186 OS=Cucumis melo OX=3656 GN=LOC103503186 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.6e-45
Identity = 127/172 (73.84%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 1   MSLVDYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPNREPRSQSHPVNQPILKPKQP 60
           MSLVDYA                            PQ P  EPR QS PVNQPI+KP Q 
Sbjct: 1   MSLVDYASSDEDVPAAVEEEKEDNRNQSENHTVTEPQLPKYEPRPQSPPVNQPIVKPNQQ 60

Query: 61  SETNED-SSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSS 120
            ETNE+ SSVP VELPDASLLLNS TSSSL SGSDHSSRVAAAMAANASRKRETNVLGSS
Sbjct: 61  FETNEESSSVPWVELPDASLLLNSQTSSSLFSGSDHSSRVAAAMAANASRKRETNVLGSS 120

Query: 121 LPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKP 172
           LPRXXXXXXXXXXXKNVP+T G LLVPPQLTGRSNIVTEDISKLFVKKSAKP
Sbjct: 121 LPRXXXXXXXXXXXKNVPDTSGTLLVPPQLTGRSNIVTEDISKLFVKKSAKP 172

[Close]

BLAST of Carg17749 vs. TrEMBL
Match: tr|A0A0A0KQH2|A0A0A0KQH2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G457750 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.3e-45
Identity = 120/172 (69.77%), Postives = 124/172 (72.09%), Query Frame = 0


Query: 1   MSLVDYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQFPNREPRSQSHPVNQPILKPKQP 60
           MSLVDYA                            P  P  EPR QS P+NQPI+KP Q 
Sbjct: 1   MSLVDYASSDEDVPAAVEEEEKDNRNQSENHIITEPHLPKHEPRPQSPPLNQPIVKPNQQ 60

Query: 61  SETNED-SSVPSVELPDASLLLNSPTSSSLLSGSDHSSRVAAAMAANASRKRETNVLGSS 120
            ETNE+ SSVP V LPDASLLLNSPTSSSL SGSDHSSRVAAAMAANASRKRETNVLGSS
Sbjct: 61  FETNEESSSVPWVGLPDASLLLNSPTSSSLFSGSDHSSRVAAAMAANASRKRETNVLGSS 120

Query: 121 LPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKP 172
           LPR   XXXXXX  KNVP+T G LLVPPQLTGRSNIVTEDISKLFVKKSAKP
Sbjct: 121 LPRSKFXXXXXXHSKNVPDTSGALLVPPQLTGRSNIVTEDISKLFVKKSAKP 172

[Close]

BLAST of Carg17749 vs. TrEMBL
Match: tr|A0A2P4HFK0|A0A2P4HFK0_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26637 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 75/116 (64.66%), Postives = 88/116 (75.86%), Query Frame = 0


Query: 59  QPSETNEDSSVPSVE-LPDASLLLNSPTS-SSLLSGSDHSSRVAAAMAANASRKRETNVL 118
           Q  E+   SS PS+E LPDAS LLNSP S S+L+S SDHSSRVAAAMA NASRKR++N L
Sbjct: 52  QQPESTAHSSEPSIERLPDASFLLNSPASLSNLMSSSDHSSRVAAAMAENASRKRDSNGL 111

Query: 119 GSSLPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKKSAKPS 173
            SSLPR           +NVP+TVG +LVPPQL+GRSN+VTEDI KLFV+K A+PS
Sbjct: 112 ASSLPRNKVPRGTLPHSRNVPDTVGGVLVPPQLSGRSNVVTEDIGKLFVRKHAEPS 167

[Close]

BLAST of Carg17749 vs. TrEMBL
Match: tr|A5BJ68|A5BJ68_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_007275 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 72/108 (66.67%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 62  ETNEDSSVPSVE-LPDASLLLNSPT-SSSLLSGSDHSSRVAAAMAANASRKRETNVLGSS 121
           E    SSVPS+E LPDAS LLNSP  SS LLSG DHSSRVAAAMA +ASRKRE     SS
Sbjct: 340 EIASSSSVPSIEKLPDASFLLNSPAISSHLLSGYDHSSRVAAAMAESASRKREAKGFSSS 399

Query: 122 LPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKK 168
           LPR           +NVP+TVG LLVPPQL G+SN+VTED+SKLFVKK
Sbjct: 400 LPRSKVPKGTLPHSRNVPDTVGGLLVPPQLKGKSNVVTEDLSKLFVKK 447

[Close]

BLAST of Carg17749 vs. TrEMBL
Match: tr|D7TDP1|D7TDP1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0158g00350 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 72/108 (66.67%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 62  ETNEDSSVPSVE-LPDASLLLNSPT-SSSLLSGSDHSSRVAAAMAANASRKRETNVLGSS 121
           E    SSVPS+E LPDAS LLNSP  SS LLSG DHSSRVAAAMA +ASRKRE     SS
Sbjct: 53  EIASSSSVPSIEKLPDASFLLNSPAISSHLLSGYDHSSRVAAAMAESASRKREAKGFSSS 112

Query: 122 LPRXXXXXXXXXXXKNVPETVGRLLVPPQLTGRSNIVTEDISKLFVKK 168
           LPR           +NVP+TVG LLVPPQL G+SN+VTED+SKLFVKK
Sbjct: 113 LPRSKVPKGTLPHSRNVPDTVGGLLVPPQLKGKSNVVTEDLSKLFVKK 160

The following BLAST results are available for this feature:

BLAST of Carg17749 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023517928.1	1.3e-57	99.42	uncharacterized protein LOC111781514 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022990875.1	1.1e-56	99.27	uncharacterized protein LOC111487632 isoform X1 [Cucurbita maxima]	[more]
XP_022964179.1	9.1e-56	98.54	uncharacterized protein LOC111464275 isoform X1 [Cucurbita moschata]	[more]
XP_023517937.1	1.2e-50	94.77	uncharacterized protein LOC111781514 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022990876.1	9.8e-50	93.43	uncharacterized protein LOC111487632 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg17749 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13470.1	3.2e-18	48.41	unknown protein	[more]

BLAST of Carg17749 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg17749 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CP27\|A0A1S3CP27_CUCME	1.6e-45	73.84	uncharacterized protein LOC103503186 OS=Cucumis melo OX=3656 GN=LOC103503186 PE=...	[more]
tr\|A0A0A0KQH2\|A0A0A0KQH2_CUCSA	6.3e-45	69.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G457750 PE=4 SV=1	[more]
tr\|A0A2P4HFK0\|A0A2P4HFK0_QUESU	3.8e-26	64.66	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_26637 PE=4 SV=1	[more]
tr\|A5BJ68\|A5BJ68_VITVI	1.0e-23	66.67	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_007275 PE=4 SV=1	[more]
tr\|D7TDP1\|D7TDP1_VITVI	1.0e-23	66.67	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0158g00350 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17749-RA	Carg17749-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..71
None	No IPR available	PANTHER	PTHR33912	FAMILY NOT NAMED	coord: 1..171
None	No IPR available	PANTHER	PTHR33912:SF3	SUBFAMILY NOT NAMED	coord: 1..171

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17749	Cla005920	Watermelon (97103) v1	carwmB0472
Carg17749	Csa5G457750	Cucumber (Chinese Long) v2	carcuB0510
Carg17749	ClCG01G007790	Watermelon (Charleston Gray)	carwcgB0462
Carg17749	CSPI05G15820	Wild cucumber (PI 183967)	carcpiB0515
Carg17749	Cucsa.317670	Cucumber (Gy14) v1	carcgyB0550
Carg17749	CmaCh04G022160	Cucurbita maxima (Rimu)	carcmaB0665
Carg17749	CmoCh04G023170	Cucurbita moschata (Rifu)	carcmoB0648
Carg17749	Lsi09G008210	Bottle gourd (USVL1VR-Ls)	carlsiB433
Carg17749	Cp4.1LG01g19300	Cucurbita pepo (Zucchini)	carcpeB0670
Carg17749	CsGy5G015560	Cucumber (Gy14) v2	carcgybB0485
Carg17749	MELO3C005114.2	Melon (DHL92) v3.6.1	carmedB0487
Carg17749	CsaV3_5G024860	Cucumber (Chinese Long) v3	carcucB0514
Carg17749	Cla97C01G008110	Watermelon (97103) v2	carwmbB0501
Carg17749	Bhi12G000955	Wax gourd	carwgoB0581

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17749	Silver-seed gourd	carcarB469
Carg17749	Cucurbita maxima (Rimu)	carcmaB0664
Carg17749	Cucurbita moschata (Rifu)	carcmoB0647
Carg17749	Cucurbita pepo (Zucchini)	carcpeB0669
Carg17749	Melon (DHL92) v3.5.1	carmeB0483
Carg17749	Wax gourd	carwgoB0579
Carg17749	Wax gourd	carwgoB0580