Carg17202 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17202
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	BRCA1-A complex subunit BRE
Location	Cucurbita_argyrosperma_scaffold_110 : 398886 .. 402325 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTTGGTTAGATTTTTACCGGACAGATGATACTCTCTGGGTTGATTAACTTGGTCTTTAGTTTTGGAAGTTGCCTAAAGTTGAAATTTTGTACTTTTATCATTCTGATGAAGGTACTGGAGGCAGTTTCGTTGATCAATGTTAGGAGAGGTTTTATAGAGGCGTTGGACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGGGATTCTTACAAATTTATTTACATCCGTCGTCTTCATTTGTTGAAAATCATCATCCAATTCTTAATTTAAGTGGTGGGGGCTCGTCAAATTTTACTGATATATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTAGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTATTGGCTTCACTATCCTTAGTATGTAGTATCCCATCACTATGTGGATTTTTTTTTCGGTTATTTACTATGAAAAAGAATATTGTTCACGTAATGGTTAGTTAATTCTTGCGATTGATAGGTTTCTTTAACTCACGATCATGTTGTCAAAATCTGCGGATGTTAGGATGAGTACCCTGGTCTGTAGATCTTCAGATAGCATAATATTGACTAGATGATCACCACCCAAAATATTTGGTACAATATTCTGGGGTCCAGCGCTGACAAAGATAGCCTTCAAATTTTCATTTTTCAGAGAGAAGCCCGAAATAAAGGATCCCTAACAACAAAAACAAAACAGTGGATAATTTTTTAAAAGGGGAAAAGAAAGAGAATAAAATTTGTAGAGAACATCCAAACATAGGCATTAAAGAAAGCGACATTCACTCTAAACTTCCTTACAACACCTTTCTATATTCTTGAAGGAATGACCGTCTGCTTGAGAAACTGACAAACTCTGACATACCCCAACAACCTGTACTTGGATTATTAGCTCTCACCACTGAGAAATGTCCTCAAATCTTCACAACAAAGTGGCATCTCCATAAAACATAATCTAATTCTTCCAATGCCCTTCCGCATAAAATACACCACTGAGACCCACAACCGAAGATGAATGTTTGACAAGTTCATGATGTCAAATTTGATTATTTTAACTATGCGTTGGTCAAATATTGACCTTGCTAACTGATTTTTACTTTTTATTTTTTTGCTGAAGAAATGTGTTATCTCATTGAATTGGATGATAGCCAAGACATTTTGCAACTATTTATCCTTTCAAATGGTTTCTCTATTCCGTCCAGTTTCTATGGGACATTTTCGTGACACAGATTCACACAAATCTTTCTTTTGCTATCAAATGTATAATAATTTGGAACAGAACGTATGCTAGACTTGCAAATCTCTTGATGGTTATGATTTACTGCTCGCACTAAGGATACTGGATCAGTGGTAAATGCTTTAAAAATTCTTCTGGTTTTAAATTAAACTACGATAGTGTGTATTGATCTGGTAAGATGGGGCATGGAATGCAGTTAATGTTTATTGATTGACAAAATAGTTGAGTGTTTTTATTTTTATTTATATATATATATATATATATATAAGAGACAACATAGGAATTTATTTTCCTTTCCCTTGTTTTTCTGGGCATTTTTTGTTAATGCTAGGTCCATTTCCTCATGTCAACCCAATTCCCAAAGAAACAACCCTCTCTGGTGCTGCAAAGTTCTCAGGTAATGTAAATTTGTCTTGAATCTTGAAATTCATGTGCATTCCAACTTTGCTTACTAGTACATGTGACGAAGGCCATGAATATATGCTTCTATGTTTTTCATCAACATGCTCCTGTGGTCGTCCAAACTCTCCTTTATTTAGACTCCGTTATCATTTGTATTTTTCTAAAAAATCTGTACATTGTGACTAATGATCGTAAATATGTTAATAGGGAATATTTGGTTAATCAGTTTTTATGAGGACGCATGTCTTGAAGTGATTAAATGACATGATAGGTGCAATCTGTATAACTCTAGTTTCCAAGGATTTTTCTGTTCATTATGAATCGGACTGGCATCATTGAGATGGTTTCTTATTTTTATCAATATTTGATGGGCCTACTAGGTTTTATAAAGACCCCTTCTTGGATTATTGGTTTAGTACCCTCTTTTTCTAATTATGCCCATATATTGTTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTGTAAGTTGTTTCTCTATCTCTCATTTTCTCGTTTGCATATACATTCACTTATCAATCATGTTAATGCCGATTTGGTTTGATTTTAACAGCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGATTGGATTATGAAAACTCTGGTCAATCTGCCCTAACATGTAACAGTCCAATACCAGTTATGTATAGTTGGTTTGTTGAGTACTTTTAAATCTTGGCATTGTCTCCCTCGATGAGGATGATTCGAACGTACATTTTATCGAGTACCGGATGTGAGCTTTCAAATTTCGAGAATCCGTATCTGTTATAAAAGTCGAATCCAGAAACAAAAGATGACCCTCAACGGGGCTGACCATGAATGCTGTATTACATTTTTTTTTTTTCTGTTGAACAGAGCAAAATCAACTTACCAATTATGCGTGTTGCTTAAAATGCTCTCTTTGTAGGATCGGACTTAATTGAGAGTGGTTTCAAAATAAGGTCTTCATGAATTTTGTCCCTTCATTTTTAAAACGTTTCAATATCAATGATTCAGCATGCATCAATGGAGTTAGACAAGCTTGACTATGGTAGGGACTAATTTGAAAATTGTTAAAATGATTTTTGATCTCTCACTGTCTTTGAGGCTTGAAAATTTAAGTCAAAAGAACTGAAATAGCACGAACAGGAGCACATAGCACACAAGGGAGAAACGACCAAAGGAGTATCAATCTCATTATAACATTGATGCAATGTTTTGGAACAACTAATCAGAGATTTAAATCAGTTTCTGAATAGAAGGGTTTGTCCATTTACACCTGAATTAGGCTGCTCTTGGTTTCTTTTTCATGCTTCGACTGATTATGAAGTCATCGTCTGATTCATCATCGGAACTTTCGTCTTTCAAATTACGCTTGGTCGACTGTTTTGCCACAACTTTGGAGCCCACTGTCATCGTCTTCTTATTTGAAGAAACTGGAGGGGATTGGACAGTTTTCTTGACAATGGTGGTCTTCGTGACGCTCTTTACAGCGGTCACAGTCTTCCCTGGGGAGCTCAACTTTTGCAGTGGTGCCTTCTTCTGCTTCTTTTCAAAAACTTTCTTTGCTTCTTCTTTGGATAGTAAACCAGACTCCATCATCCTGCA

mRNA sequence

ATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGAGGCAGTTTCGTTGATCAATGTTAGGAGAGGTTTTATAGAGGCGTTGGACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTCCATTTCCTCATGTCAACCCAATTCCCAAAGAAACAACCCTCTCTGGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGATTGGATTATGAAAACTCTGGTCAATCTGCCCTAACATGTAACAGTCCAATACCAGTTATGTATAGTTGGTTTGTTGAGTACTTTTAAATCTTGGCATTGTCTCCCTCGATGAGGATGATTCGAACGTACATTTTATCGAGTACCGGATGTGAGCTTTCAAATTTCGAGAATCCGTATCTGTTATAAAAGTCGAATCCAGAAACAAAAGATGACCCTCAACGGGGCTGACCATGAATGCTGTATTACATTTTTTTTTTTTCTGTTGAACAGAGCAAAATCAACTTACCAATTATGCGTGTTGCTTAAAATGCTCTCTTTGTAGGATCGGACTTAATTGAGAGTGGTTTCAAAATAAGGTCTTCATGAATTTTGTCCCTTCATTTTTAAAACGTTTCAATATCAATGATTCAGCATGCATCAATGGAGTTAGACAAGCTTGACTATGGTAGGGACTAATTTGAAAATTGTTAAAATGATTTTTGATCTCTCACTGTCTTTGAGGCTTGAAAATTTAAGTCAAAAGAACTGAAATAGCACGAACAGGAGCACATAGCACACAAGGGAGAAACGACCAAAGGAGTATCAATCTCATTATAACATTGATGCAATGTTTTGGAACAACTAATCAGAGATTTAAATCAGTTTCTGAATAGAAGGGTTTGTCCATTTACACCTGAATTAGGCTGCTCTTGGTTTCTTTTTCATGCTTCGACTGATTATGAAGTCATCGTCTGATTCATCATCGGAACTTTCGTCTTTCAAATTACGCTTGGTCGACTGTTTTGCCACAACTTTGGAGCCCACTGTCATCGTCTTCTTATTTGAAGAAACTGGAGGGGATTGGACAGTTTTCTTGACAATGGTGGTCTTCGTGACGCTCTTTACAGCGGTCACAGTCTTCCCTGGGGAGCTCAACTTTTGCAGTGGTGCCTTCTTCTGCTTCTTTTCAAAAACTTTCTTTGCTTCTTCTTTGGATAGTAAACCAGACTCCATCATCCTGCA

Coding sequence (CDS)

ATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGAGGCAGTTTCGTTGATCAATGTTAGGAGAGGTTTTATAGAGGCGTTGGACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTCCATTTCCTCATGTCAACCCAATTCCCAAAGAAACAACCCTCTCTGGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGATTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGA

Protein sequence

MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ

Homology

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BLAST of Carg17202 vs. NCBI nr
Match: XP_023525358.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.9 bits (712), Expect = 9.5e-72
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF
Sbjct: 242 MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 301

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF
Sbjct: 302 TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 361

Query: 121 LADEALSFKRYCNEAQLQ 139
           LADEALSFKRYCNEAQLQ
Sbjct: 362 LADEALSFKRYCNEAQLQ 379

[Close]

BLAST of Carg17202 vs. NCBI nr
Match: XP_023525359.1 (BRISC and BRCA1-A complex member 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.9 bits (712), Expect = 9.5e-72
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF
Sbjct: 183 MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 242

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF
Sbjct: 243 TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 302

Query: 121 LADEALSFKRYCNEAQLQ 139
           LADEALSFKRYCNEAQLQ
Sbjct: 303 LADEALSFKRYCNEAQLQ 320

[Close]

BLAST of Carg17202 vs. NCBI nr
Match: XP_022940534.1 (BRISC and BRCA1-A complex member 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 276.2 bits (705), Expect = 6.2e-71
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQVLEAVSLINVRRGFIEAL SFFGRPLEADPVFCRTATVIAASGVF
Sbjct: 183 MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALGSFFGRPLEADPVFCRTATVIAASGVF 242

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF
Sbjct: 243 TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 302

Query: 121 LADEALSFKRYCNEAQLQ 139
           LADEALSFKRYCNEAQLQ
Sbjct: 303 LADEALSFKRYCNEAQLQ 320

[Close]

BLAST of Carg17202 vs. NCBI nr
Match: XP_022940533.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 276.2 bits (705), Expect = 6.2e-71
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQVLEAVSLINVRRGFIEAL SFFGRPLEADPVFCRTATVIAASGVF
Sbjct: 242 MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALGSFFGRPLEADPVFCRTATVIAASGVF 301

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF
Sbjct: 302 TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 361

Query: 121 LADEALSFKRYCNEAQLQ 139
           LADEALSFKRYCNEAQLQ
Sbjct: 362 LADEALSFKRYCNEAQLQ 379

[Close]

BLAST of Carg17202 vs. NCBI nr
Match: XP_022981790.1 (BRISC and BRCA1-A complex member 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 272.3 bits (695), Expect = 8.9e-70
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQVL+AVSLINVRR FIEAL+SFFGRPLEADPVFCRTATVIAASGVF
Sbjct: 183 MAEYLPHLEESLEKQVLDAVSLINVRRRFIEALNSFFGRPLEADPVFCRTATVIAASGVF 242

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAER+FEF
Sbjct: 243 TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERVFEF 302

Query: 121 LADEALSFKRYCNEAQLQ 139
           LADEALSFKRYCNEAQLQ
Sbjct: 303 LADEALSFKRYCNEAQLQ 320

[Close]

BLAST of Carg17202 vs. TAIR10
Match: AT5G42470.1 (Brain/reproductive organ-expressed protein (InterPro:IPR010358))

HSP 1 Score: 197.2 bits (500), Expect = 6.6e-51
Identity = 91/138 (65.94%), Postives = 112/138 (81.16%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           +AEYLPHLEE+LE+Q+ EAV+ I++RR FIEAL    GRPLEADP FCR AT + ASG F
Sbjct: 244 LAEYLPHLEETLERQIHEAVAAIDLRRSFIEALSLNLGRPLEADPTFCRKATFLNASGQF 303

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TF+VHF  STQFPK+QP+L+LQS QH N    P+KS L+T+YPWSPRWE  +MAER+ +F
Sbjct: 304 TFMVHFFFSTQFPKQQPTLMLQSCQHLNQSSVPVKSNLLTEYPWSPRWEVGRMAERLCDF 363

Query: 121 LADEALSFKRYCNEAQLQ 139
           L DEA++FK+YCNEA LQ
Sbjct: 364 LTDEAVNFKKYCNEALLQ 381

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BLAST of Carg17202 vs. Swiss-Prot
Match: sp|Q568D5|BABA2_DANRE (BRISC and BRCA1-A complex member 2 OS=Danio rerio OX=7955 GN=babam2 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGV 60
           + +Y+P + + L  +V   +   + RR +I A  S FG   +E D V     T++     
Sbjct: 249 LIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLSHFGMGVVEYDAVGFTKLTLLLMWKD 308

Query: 61  FTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAER 117
           F FLVH  +   FP+ QP+L  QS  HF S G  + SQ+   YP+SPRW+  +MA+R
Sbjct: 309 FCFLVHVDLPLYFPRDQPTLTFQSIYHFTSSG-QLYSQVQKSYPYSPRWDGNEMAKR 364

[Close]

BLAST of Carg17202 vs. Swiss-Prot
Match: sp|Q6DJ78|BABA2_XENTR (BRISC and BRCA1-A complex member 2 OS=Xenopus tropicalis OX=8364 GN=babam2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 40/117 (34.19%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGV 60
           + +Y+P + + L  +V   +   + RR +I A  S FG   +E D       T++ +   
Sbjct: 246 LIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLSWKD 305

Query: 61  FTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAER 117
           F FLVH  +   FP+ QP+L  QS  HF + G  + SQ   +YP+SPRW+  +MA+R
Sbjct: 306 FCFLVHIDLPLYFPRDQPTLTFQSVYHFTNSG-QLYSQAQKNYPYSPRWDGNEMAKR 361

[Close]

BLAST of Carg17202 vs. Swiss-Prot
Match: sp|Q5ZML0|BABA2_CHICK (BRISC and BRCA1-A complex member 2 OS=Gallus gallus OX=9031 GN=BABAM2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-09
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGV 60
           + +Y+P + + L  +V   +   + RR +I A  S FG   +E D       T++     
Sbjct: 246 LIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKD 305

Query: 61  FTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAER 117
           F FLVH  +   FP+ QP+L  QS  HF + G  + SQ   +YP+SPRW+  +MA+R
Sbjct: 306 FCFLVHIDLPLYFPRDQPTLTFQSVYHFTNSG-QLYSQAQKNYPYSPRWDGNEMAKR 361

[Close]

BLAST of Carg17202 vs. Swiss-Prot
Match: sp|Q6P7Q1|BABA2_RAT (BRISC and BRCA1-A complex member 2 OS=Rattus norvegicus OX=10116 GN=Babam2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 40/117 (34.19%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGV 60
           + +Y+P +   L  +V   +   + RR +I A  S FG   +E D       T++     
Sbjct: 246 LIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKE 305

Query: 61  FTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAER 117
           F FLVH  +   FP+ QP+L  QS  HF + G  + SQ   +YP+SPRW+  +MA+R
Sbjct: 306 FCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSG-QLYSQAQKNYPYSPRWDGNEMAKR 361

[Close]

BLAST of Carg17202 vs. Swiss-Prot
Match: sp|A6QQW8|BABA2_BOVIN (BRISC and BRCA1-A complex member 2 OS=Bos taurus OX=9913 GN=BABAM2 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-09
Identity = 40/117 (34.19%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGR-PLEADPVFCRTATVIAASGV 60
           + +Y+P +   L  +V   +   + RR +I A  S FG   +E D       T++     
Sbjct: 246 LIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKD 305

Query: 61  FTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAER 117
           F FLVH  +   FP+ QP+L  QS  HF + G  + SQ   +YP+SPRW+  +MA+R
Sbjct: 306 FCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSG-QLYSQAQKNYPYSPRWDGNEMAKR 361

[Close]

BLAST of Carg17202 vs. TrEMBL
Match: tr|A0A1S3CSN0|A0A1S3CSN0_CUCME (BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.2e-69
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQVLEAVSLI+VRRGFIEALD+FFGRPLEADPVFCRTATVI ASGVF
Sbjct: 242 MAEYLPHLEESLEKQVLEAVSLIDVRRGFIEALDNFFGRPLEADPVFCRTATVITASGVF 301

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TFLVH L+STQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF
Sbjct: 302 TFLVHILISTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 361

Query: 121 LADEALSFKRYCNEAQLQ 139
           LADEALSFKRYCNEAQLQ
Sbjct: 362 LADEALSFKRYCNEAQLQ 379

[Close]

BLAST of Carg17202 vs. TrEMBL
Match: tr|A0A0A0LDL1|A0A0A0LDL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872710 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.8e-69
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQVLEAVSLI+VRRGFIEAL+SFFGRPLEADPVFCRTATVI ASGVF
Sbjct: 242 MAEYLPHLEESLEKQVLEAVSLIDVRRGFIEALNSFFGRPLEADPVFCRTATVITASGVF 301

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TFLVH L+STQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF
Sbjct: 302 TFLVHILISTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 361

Query: 121 LADEALSFKRYCNEAQLQ 139
           LADEALSFKRYCNEAQLQ
Sbjct: 362 LADEALSFKRYCNEAQLQ 379

[Close]

BLAST of Carg17202 vs. TrEMBL
Match: tr|W9RNI6|W9RNI6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016058 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.6e-57
Identity = 111/138 (80.43%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQVLEA+SL++VRR FIEAL   FGRPLEADPVFCR ATV+AA+GVF
Sbjct: 241 MAEYLPHLEESLEKQVLEAISLVDVRRRFIEALAPLFGRPLEADPVFCRRATVLAATGVF 300

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TF+VHF +  QFP++QP+L+LQSSQHFNSQGA IKS  +T+YPWSPRWE  QMAERIFEF
Sbjct: 301 TFMVHFFIPIQFPRQQPALMLQSSQHFNSQGALIKSNHLTEYPWSPRWELSQMAERIFEF 360

Query: 121 LADEALSFKRYCNEAQLQ 139
           LADEAL+FKRYCNEAQLQ
Sbjct: 361 LADEALNFKRYCNEAQLQ 378

[Close]

BLAST of Carg17202 vs. TrEMBL
Match: tr|A0A2N9FFD0|A0A2N9FFD0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17448 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 6.3e-56
Identity = 109/138 (78.99%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQVLEAVSLI+VRR FIE L S FGRPLEADPVFCR AT +A+SG F
Sbjct: 242 MAEYLPHLEESLEKQVLEAVSLIDVRRRFIEDLASLFGRPLEADPVFCRKATFLASSGAF 301

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TFLVHF++ TQFPK+QP L+LQSSQH NSQG P+KS  ITD+PWSPRWE   MAERIFEF
Sbjct: 302 TFLVHFIIPTQFPKQQPVLMLQSSQHLNSQGVPVKSPPITDFPWSPRWEASLMAERIFEF 361

Query: 121 LADEALSFKRYCNEAQLQ 139
           L DEAL+FKRYCNE+Q+Q
Sbjct: 362 LVDEALNFKRYCNESQIQ 379

[Close]

BLAST of Carg17202 vs. TrEMBL
Match: tr|A0A2P4K674|A0A2P4K674_QUESU (Brca1-a complex subunit bre OS=Quercus suber OX=58331 GN=CFP56_66681 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-55
Identity = 108/138 (78.26%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 1   MAEYLPHLEESLEKQVLEAVSLINVRRGFIEALDSFFGRPLEADPVFCRTATVIAASGVF 60
           MAEYLPHLEESLEKQ+LEAVSLI+VRR FIE+L   FGRPLEADP+FCR AT +A SG F
Sbjct: 221 MAEYLPHLEESLEKQILEAVSLIDVRRRFIESLAPLFGRPLEADPIFCRKATFLAGSGAF 280

Query: 61  TFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERIFEF 120
           TFLVHF +STQFPK+QP L+LQSSQH NS G P KS LIT+YPWSPRWE   MAE+IFEF
Sbjct: 281 TFLVHFSISTQFPKQQPGLMLQSSQHMNSHGVPAKSPLITEYPWSPRWETSVMAEKIFEF 340

Query: 121 LADEALSFKRYCNEAQLQ 139
           L DEAL+FKRYCNEAQLQ
Sbjct: 341 LVDEALNFKRYCNEAQLQ 358

The following BLAST results are available for this feature:

BLAST of Carg17202 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525358.1	9.5e-72	100.00	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023525359.1	9.5e-72	100.00	BRISC and BRCA1-A complex member 2-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022940534.1	6.2e-71	99.28	BRISC and BRCA1-A complex member 2-like isoform X2 [Cucurbita moschata]	[more]
XP_022940533.1	6.2e-71	99.28	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata]	[more]
XP_022981790.1	8.9e-70	97.10	BRISC and BRCA1-A complex member 2-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg17202 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42470.1	6.6e-51	65.94	Brain/reproductive organ-expressed protein (InterPro:IPR010358)	[more]

BLAST of Carg17202 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q568D5\|BABA2_DANRE	1.1e-10	35.90	BRISC and BRCA1-A complex member 2 OS=Danio rerio OX=7955 GN=babam2 PE=2 SV=1	[more]
sp\|Q6DJ78\|BABA2_XENTR	7.1e-10	34.19	BRISC and BRCA1-A complex member 2 OS=Xenopus tropicalis OX=8364 GN=babam2 PE=2 ...	[more]
sp\|Q5ZML0\|BABA2_CHICK	1.2e-09	34.19	BRISC and BRCA1-A complex member 2 OS=Gallus gallus OX=9031 GN=BABAM2 PE=2 SV=1	[more]
sp\|Q6P7Q1\|BABA2_RAT	2.7e-09	34.19	BRISC and BRCA1-A complex member 2 OS=Rattus norvegicus OX=10116 GN=Babam2 PE=1 ...	[more]
sp\|A6QQW8\|BABA2_BOVIN	3.5e-09	34.19	BRISC and BRCA1-A complex member 2 OS=Bos taurus OX=9913 GN=BABAM2 PE=2 SV=1	[more]

BLAST of Carg17202 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSN0\|A0A1S3CSN0_CUCME	2.2e-69	96.38	BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1	[more]
tr\|A0A0A0LDL1\|A0A0A0LDL1_CUCSA	3.8e-69	96.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872710 PE=4 SV=1	[more]
tr\|W9RNI6\|W9RNI6_9ROSA	2.6e-57	80.43	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016058 PE=4 SV=1	[more]
tr\|A0A2N9FFD0\|A0A2N9FFD0_FAGSY	6.3e-56	78.99	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17448 PE=4 SV=1	[more]
tr\|A0A2P4K674\|A0A2P4K674_QUESU	1.1e-55	78.26	Brca1-a complex subunit bre OS=Quercus suber OX=58331 GN=CFP56_66681 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0070552	BRISC complex
GO:0070531	BRCA1-A complex

Vocabulary: **INTERPRO**
Term	Definition
IPR010358	BRE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0070531	BRCA1-A complex
cellular_component	GO:0070552	BRISC complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17202-RA	Carg17202-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010358	BRCA1-A complex subunit BRE	PFAM	PF06113	BRE	coord: 3..87 e-value: 2.7E-9 score: 36.2
IPR010358	BRCA1-A complex subunit BRE	PANTHER	PTHR15189	FAMILY NOT NAMED	coord: 1..137

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17202	Cla020844	Watermelon (97103) v1	carwmB0945
Carg17202	Csa3G872710	Cucumber (Chinese Long) v2	carcuB0961
Carg17202	ClCG05G018230	Watermelon (Charleston Gray)	carwcgB0920
Carg17202	CSPI03G43460	Wild cucumber (PI 183967)	carcpiB0984
Carg17202	Cucsa.343070	Cucumber (Gy14) v1	carcgyB1066
Carg17202	CmaCh01G019760	Cucurbita maxima (Rimu)	carcmaB1293
Carg17202	CmaCh09G001030	Cucurbita maxima (Rimu)	carcmaB1291
Carg17202	CmoCh09G000990	Cucurbita moschata (Rifu)	carcmoB1261
Carg17202	CmoCh01G020340	Cucurbita moschata (Rifu)	carcmoB1263
Carg17202	Lsi04G017500	Bottle gourd (USVL1VR-Ls)	carlsiB863
Carg17202	Cp4.1LG06g00640	Cucurbita pepo (Zucchini)	carcpeB1310
Carg17202	Cp4.1LG02g08070	Cucurbita pepo (Zucchini)	carcpeB1309
Carg17202	CsGy3G041000	Cucumber (Gy14) v2	carcgybB0934
Carg17202	MELO3C030484.2	Melon (DHL92) v3.6.1	carmedB0934
Carg17202	CsaV3_3G045910	Cucumber (Chinese Long) v3	carcucB0989
Carg17202	Cla97C05G099560	Watermelon (97103) v2	carwmbB0994
Carg17202	Bhi09G001782	Wax gourd	carwgoB1097

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17202	Carg08676	Silver-seed gourd	carcarB125

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17202	Wax gourd	carwgoB1092
Carg17202	Silver-seed gourd	carcarB167
Carg17202	Silver-seed gourd	carcarB647
Carg17202	Cucumber (Gy14) v2	carcgybB0933
Carg17202	Cucumber (Gy14) v1	carcgyB1064
Carg17202	Cucurbita maxima (Rimu)	carcmaB1292
Carg17202	Cucurbita maxima (Rimu)	carcmaB1294
Carg17202	Cucurbita moschata (Rifu)	carcmoB1265
Carg17202	Cucurbita pepo (Zucchini)	carcpeB1307
Carg17202	Cucurbita pepo (Zucchini)	carcpeB1311
Carg17202	Wild cucumber (PI 183967)	carcpiB0983
Carg17202	Cucumber (Chinese Long) v2	carcuB0960
Carg17202	Cucumber (Chinese Long) v3	carcucB0988
Carg17202	Bottle gourd (USVL1VR-Ls)	carlsiB864
Carg17202	Melon (DHL92) v3.5.1	carmeB0927
Carg17202	Melon (DHL92) v3.5.1	carmeB0928
Carg17202	Melon (DHL92) v3.6.1	carmedB0933
Carg17202	Watermelon (Charleston Gray)	carwcgB0922
Carg17202	Watermelon (97103) v1	carwmB0944
Carg17202	Watermelon (97103) v2	carwmbB0996